Wall clock time and date at job start Mon Mar 30 2020 04:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.58671 * 2 1 4 4 C 1.53187 * 109.58813 * 120.29055 * 2 1 3 5 5 C 1.53049 * 109.31497 * 65.28993 * 4 2 1 6 6 C 1.53039 * 109.53353 * 61.36666 * 5 4 2 7 7 H 1.09002 * 109.49751 * 58.58726 * 6 5 4 8 8 C 1.53003 * 109.49634 * 178.65292 * 6 5 4 9 9 N 1.46904 * 109.46893 * 294.93447 * 8 6 5 10 10 C 1.53189 * 109.31469 * 298.63364 * 6 5 4 11 11 N 1.46925 * 108.77432 * 54.63840 * 10 6 5 12 12 S 1.65603 * 120.63087 * 126.41421 * 11 10 6 13 13 O 1.42091 * 106.40364 * 23.51672 * 12 11 10 14 14 O 1.42106 * 106.39883 * 156.43805 * 12 11 10 15 15 C 1.76198 * 107.21547 * 269.97433 * 12 11 10 16 16 H 1.07999 * 120.00225 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99897 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99825 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00133 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.46810 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47071 * 119.99897 * 19 17 15 22 22 H 1.48503 * 109.46864 * 240.00015 * 19 17 15 23 23 H 1.08994 * 109.46651 * 299.71125 * 1 2 3 24 24 H 1.09000 * 109.47148 * 59.71123 * 1 2 3 25 25 H 1.08994 * 109.47001 * 179.71450 * 1 2 3 26 26 H 1.09006 * 109.49516 * 305.34377 * 4 2 1 27 27 H 1.08993 * 109.52540 * 185.25997 * 4 2 1 28 28 H 1.08998 * 109.45961 * 301.34644 * 5 4 2 29 29 H 1.08995 * 109.44701 * 181.37889 * 5 4 2 30 30 H 1.09000 * 109.46899 * 54.93030 * 8 6 5 31 31 H 1.08996 * 109.47371 * 174.93964 * 8 6 5 32 32 H 1.00902 * 111.00158 * 179.97438 * 9 8 6 33 33 H 1.00903 * 111.00245 * 303.95716 * 9 8 6 34 34 H 1.09005 * 109.59035 * 174.42275 * 10 6 5 35 35 H 1.08998 * 109.58991 * 294.85003 * 10 6 5 36 36 H 0.97002 * 120.00479 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7279 1.2462 5 6 1.6445 -2.2035 1.1710 6 6 2.2858 -2.8449 -0.0617 7 1 3.3695 -2.7437 -0.0022 8 6 1.9137 -4.3279 -0.1177 9 7 2.5045 -5.0248 1.0328 10 6 1.7750 -2.1410 -1.3227 11 7 2.0254 -0.6990 -1.1937 12 16 2.8497 0.1230 -2.3715 13 8 2.7015 -0.6319 -3.5662 14 8 2.4589 1.4846 -2.2589 15 6 4.5598 0.0599 -1.9519 16 1 4.8779 -0.4562 -1.0581 17 6 5.4921 0.6685 -2.7653 18 7 5.1048 1.2965 -3.8540 19 14 7.3052 0.6010 -2.3209 20 1 7.4770 -0.1591 -1.0569 21 1 8.0571 -0.0723 -3.4101 22 1 7.8227 1.9814 -2.1421 23 1 -0.3632 0.5093 0.8925 24 1 -0.3633 0.5183 -0.8874 25 1 -0.3633 -1.0276 -0.0051 26 1 1.6056 -0.2776 2.1370 27 1 3.1295 -0.6467 1.2939 28 1 0.5598 -2.2831 1.0990 29 1 1.9877 -2.7185 2.0683 30 1 0.8290 -4.4317 -0.0874 31 1 2.2949 -4.7636 -1.0412 32 1 2.2726 -6.0067 1.0189 33 1 3.5039 -4.8893 1.0634 34 1 2.3021 -2.5267 -2.1955 35 1 0.7050 -2.3178 -1.4319 36 1 5.7607 1.7244 -4.4264 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083921893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:32 Heat of formation + Delta-G solvation = -106.915347 kcal Electronic energy + Delta-G solvation = -19340.971391 eV Core-core repulsion = 16371.583990 eV Total energy + Delta-G solvation = -2969.387401 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.78624 -35.38821 -34.92146 -33.92395 -33.07729 -31.57397 -31.07138 -27.44453 -26.08924 -24.15901 -23.39705 -21.04961 -19.48229 -18.31087 -17.21319 -16.32013 -15.74514 -15.13136 -15.00345 -14.66980 -14.41790 -14.02770 -13.61937 -13.33851 -13.13627 -12.65036 -12.30058 -12.13252 -12.00293 -11.78089 -11.31364 -11.23666 -11.12100 -10.73926 -10.60979 -10.57503 -10.33542 -10.26104 -10.25476 -9.92701 -9.71165 -9.24859 -8.85167 -8.67110 -8.10956 -6.68197 -5.29699 2.30065 3.04992 3.13365 3.20517 4.05861 4.50879 4.60579 4.65574 4.98819 5.16266 5.26414 5.43647 5.53947 5.62273 5.73110 5.79305 5.85351 5.87534 5.99990 6.02813 6.08509 6.19560 6.26614 6.34164 6.41871 6.46514 6.59117 6.62461 6.82507 6.98636 7.10550 7.34581 7.39993 7.67395 8.00681 8.90857 10.25228 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.008384 C = 0.007165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.754217 B = 3338.799423 C = 3907.088166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.149 3.851 3 H 0.096 0.904 4 C -0.130 4.130 5 C -0.099 4.099 6 C -0.102 4.102 7 H 0.076 0.924 8 C 0.066 3.934 9 N -0.850 5.850 10 C 0.133 3.867 11 N -1.005 6.005 12 S 2.715 3.285 13 O -1.006 7.006 14 O -1.004 7.004 15 C -1.018 5.018 16 H 0.102 0.898 17 C 0.132 3.868 18 N -0.847 5.847 19 Si 0.918 3.082 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.271 1.271 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.337 0.663 33 H 0.340 0.660 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 -8.533 9.357 13.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.043 3.957 3 H 0.114 0.886 4 C -0.169 4.169 5 C -0.136 4.136 6 C -0.123 4.123 7 H 0.094 0.906 8 C -0.066 4.066 9 N -0.379 5.379 10 C 0.006 3.994 11 N -0.839 5.839 12 S 2.816 3.184 13 O -0.997 6.997 14 O -0.995 6.995 15 C -1.152 5.152 16 H 0.120 0.880 17 C -0.085 4.085 18 N -0.477 5.477 19 Si 0.742 3.258 20 H -0.186 1.186 21 H -0.197 1.197 22 H -0.196 1.196 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.631 -7.511 8.858 12.907 hybrid contribution 2.031 -0.763 -0.185 2.177 sum -3.600 -8.273 8.673 12.515 Atomic orbital electron populations 1.22135 0.96178 1.01770 1.01717 1.20763 0.93669 0.96467 0.84835 0.88605 1.21948 1.01650 0.96077 0.97243 1.21397 0.99911 0.94682 0.97651 1.21565 1.01313 0.93095 0.96306 0.90604 1.21795 0.99639 0.94027 0.91101 1.58709 1.17172 1.16308 1.45686 1.21131 1.00143 0.80801 0.97331 1.58222 1.72699 1.16460 1.36528 1.00486 0.75117 0.71759 0.71000 1.93344 1.88425 1.72806 1.45084 1.93349 1.84987 1.35029 1.86101 1.30680 1.17048 1.47664 1.19784 0.88000 1.24755 1.01667 0.89934 0.92147 1.69907 1.37568 1.28643 1.11570 0.86168 0.81321 0.78828 0.79465 1.18627 1.19657 1.19597 0.92271 0.92459 0.92423 0.91680 0.91402 0.92343 0.91323 0.91111 0.95274 0.85148 0.84744 0.89466 0.92520 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.03 37.16 0.34 -2.03 16 2 C 0.15 2.63 3.14 -67.60 -0.21 2.42 16 3 H 0.10 1.85 7.13 -51.93 -0.37 1.48 16 4 C -0.13 -1.92 5.55 -26.61 -0.15 -2.06 16 5 C -0.10 -1.33 4.87 -26.69 -0.13 -1.46 16 6 C -0.10 -1.47 2.48 -90.50 -0.22 -1.70 16 7 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 8 C 0.07 0.77 6.18 -3.82 -0.02 0.75 16 9 N -0.85 -8.72 9.06 -10.37 -0.09 -8.81 16 10 C 0.13 2.30 5.25 -3.71 -0.02 2.28 16 11 N -1.01 -20.51 3.00 -106.47 -0.32 -20.83 16 12 S 2.71 72.78 4.97 -107.50 -0.53 72.25 16 13 O -1.01 -29.52 16.73 -57.17 -0.96 -30.47 16 14 O -1.00 -29.52 16.73 -57.17 -0.96 -30.47 16 15 C -1.02 -28.15 9.75 30.60 0.30 -27.85 16 16 H 0.10 2.60 7.81 -52.49 -0.41 2.19 16 17 C 0.13 3.72 5.46 -17.82 -0.10 3.63 16 18 N -0.85 -25.14 13.19 55.43 0.73 -24.41 16 19 Si 0.92 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.78 5.74 -51.93 -0.30 0.48 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.75 6.51 -51.93 -0.34 0.41 16 29 H 0.07 0.89 7.72 -51.93 -0.40 0.49 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.34 2.78 9.08 -39.29 -0.36 2.42 16 33 H 0.34 3.37 8.99 -39.29 -0.35 3.01 16 34 H 0.09 1.63 7.13 -51.93 -0.37 1.26 16 35 H 0.06 0.87 7.49 -51.93 -0.39 0.48 16 36 H 0.29 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 299.16 15.07 4.51 4.51 Total: -1.00 -34.16 299.16 -8.24 -42.41 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.38 Total: 6.19 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: -0.22 Total: -26.03 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.32 Total: -54.04 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -1.91 Total: -60.95 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 72.78 SS G_CDS: -0.53 Total: 72.25 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.16 -8.24 -42.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.509 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds