Wall clock time and date at job start Mon Mar 30 2020 04:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.58671 * 2 1 4 4 C 1.53187 * 109.58813 * 120.29055 * 2 1 3 5 5 C 1.53049 * 109.31497 * 65.28993 * 4 2 1 6 6 C 1.53039 * 109.53353 * 61.36666 * 5 4 2 7 7 H 1.09002 * 109.49751 * 58.58726 * 6 5 4 8 8 C 1.53003 * 109.49634 * 178.65292 * 6 5 4 9 9 N 1.46904 * 109.46893 * 294.93447 * 8 6 5 10 10 C 1.53189 * 109.31469 * 298.63364 * 6 5 4 11 11 N 1.46925 * 108.77432 * 54.63840 * 10 6 5 12 12 S 1.65603 * 120.63087 * 126.41421 * 11 10 6 13 13 O 1.42091 * 106.40364 * 23.51672 * 12 11 10 14 14 O 1.42106 * 106.39883 * 156.43805 * 12 11 10 15 15 C 1.76198 * 107.21547 * 269.97433 * 12 11 10 16 16 H 1.07999 * 120.00225 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99897 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99825 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00133 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.46810 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47071 * 119.99897 * 19 17 15 22 22 H 1.48503 * 109.46864 * 240.00015 * 19 17 15 23 23 H 1.08994 * 109.46651 * 299.71125 * 1 2 3 24 24 H 1.09000 * 109.47148 * 59.71123 * 1 2 3 25 25 H 1.08994 * 109.47001 * 179.71450 * 1 2 3 26 26 H 1.09006 * 109.49516 * 305.34377 * 4 2 1 27 27 H 1.08993 * 109.52540 * 185.25997 * 4 2 1 28 28 H 1.08998 * 109.45961 * 301.34644 * 5 4 2 29 29 H 1.08995 * 109.44701 * 181.37889 * 5 4 2 30 30 H 1.09000 * 109.46899 * 54.93030 * 8 6 5 31 31 H 1.08996 * 109.47371 * 174.93964 * 8 6 5 32 32 H 1.00902 * 111.00158 * 179.97438 * 9 8 6 33 33 H 1.00903 * 111.00245 * 303.95716 * 9 8 6 34 34 H 1.09005 * 109.59035 * 174.42275 * 10 6 5 35 35 H 1.08998 * 109.58991 * 294.85003 * 10 6 5 36 36 H 0.97002 * 120.00479 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7279 1.2462 5 6 1.6445 -2.2035 1.1710 6 6 2.2858 -2.8449 -0.0617 7 1 3.3695 -2.7437 -0.0022 8 6 1.9137 -4.3279 -0.1177 9 7 2.5045 -5.0248 1.0328 10 6 1.7750 -2.1410 -1.3227 11 7 2.0254 -0.6990 -1.1937 12 16 2.8497 0.1230 -2.3715 13 8 2.7015 -0.6319 -3.5662 14 8 2.4589 1.4846 -2.2589 15 6 4.5598 0.0599 -1.9519 16 1 4.8779 -0.4562 -1.0581 17 6 5.4921 0.6685 -2.7653 18 7 5.1048 1.2965 -3.8540 19 14 7.3052 0.6010 -2.3209 20 1 7.4770 -0.1591 -1.0569 21 1 8.0571 -0.0723 -3.4101 22 1 7.8227 1.9814 -2.1421 23 1 -0.3632 0.5093 0.8925 24 1 -0.3633 0.5183 -0.8874 25 1 -0.3633 -1.0276 -0.0051 26 1 1.6056 -0.2776 2.1370 27 1 3.1295 -0.6467 1.2939 28 1 0.5598 -2.2831 1.0990 29 1 1.9877 -2.7185 2.0683 30 1 0.8290 -4.4317 -0.0874 31 1 2.2949 -4.7636 -1.0412 32 1 2.2726 -6.0067 1.0189 33 1 3.5039 -4.8893 1.0634 34 1 2.3021 -2.5267 -2.1955 35 1 0.7050 -2.3178 -1.4319 36 1 5.7607 1.7244 -4.4264 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083921893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:32 Heat of formation + Delta-G solvation = -135.097609 kcal Electronic energy + Delta-G solvation = -19342.193466 eV Core-core repulsion = 16371.583990 eV Total energy + Delta-G solvation = -2970.609476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.07799 -37.50503 -36.16995 -36.07287 -35.19902 -32.98892 -32.16971 -28.69145 -28.22739 -25.32122 -24.65563 -22.27276 -21.15484 -20.05797 -18.93805 -18.32961 -17.12101 -16.75330 -16.53980 -15.96984 -15.75342 -15.55166 -15.37031 -14.71527 -14.40726 -14.08306 -13.96763 -13.49772 -13.35078 -13.25207 -13.05997 -12.96433 -12.60091 -12.51239 -12.41105 -12.31719 -12.09564 -11.89024 -11.59388 -11.32059 -11.28920 -11.08233 -10.87582 -9.71260 -9.48302 -8.76351 -7.50288 0.30813 1.29522 1.30297 1.48184 2.17735 2.54844 2.81376 3.63922 3.75886 3.81768 3.99352 4.06733 4.24061 4.33736 4.36999 4.45992 4.50075 4.64890 4.73537 4.80926 4.83930 4.90879 5.00443 5.06094 5.18361 5.23069 5.25413 5.33317 5.48706 5.56416 5.67546 5.89820 6.05633 6.28897 6.68700 6.75866 8.18776 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.008384 C = 0.007165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.754217 B = 3338.799423 C = 3907.088166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 H 0.069 0.931 4 C -0.125 4.125 5 C -0.090 4.090 6 C -0.097 4.097 7 H 0.058 0.942 8 C 0.072 3.928 9 N -0.849 5.849 10 C 0.125 3.875 11 N -1.001 6.001 12 S 2.716 3.284 13 O -1.043 7.043 14 O -1.042 7.042 15 C -1.037 5.037 16 H 0.116 0.884 17 C 0.069 3.931 18 N -0.897 5.897 19 Si 0.989 3.011 20 H -0.247 1.247 21 H -0.258 1.258 22 H -0.258 1.258 23 H 0.089 0.911 24 H 0.036 0.964 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.026 0.974 32 H 0.351 0.649 33 H 0.343 0.657 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.635 -10.094 11.777 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.031 3.969 3 H 0.087 0.913 4 C -0.164 4.164 5 C -0.128 4.128 6 C -0.118 4.118 7 H 0.077 0.923 8 C -0.059 4.059 9 N -0.379 5.379 10 C -0.001 4.001 11 N -0.838 5.838 12 S 2.819 3.181 13 O -1.034 7.034 14 O -1.033 7.033 15 C -1.170 5.170 16 H 0.134 0.866 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.807 3.193 20 H -0.170 1.170 21 H -0.182 1.182 22 H -0.183 1.183 23 H 0.108 0.892 24 H 0.055 0.945 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.518 -9.085 11.278 15.498 hybrid contribution 1.901 -0.297 -0.910 2.129 sum -3.617 -9.381 10.368 14.443 Atomic orbital electron populations 1.22122 0.93742 1.03171 1.02314 1.21091 0.95659 0.95354 0.84808 0.91270 1.21938 1.00842 0.97046 0.96591 1.21366 1.00704 0.93373 0.97338 1.21497 1.00285 0.94815 0.95186 0.92316 1.21674 1.00472 0.92109 0.91668 1.58672 1.17363 1.17318 1.44591 1.21401 1.01461 0.78894 0.98343 1.57723 1.72124 1.17743 1.36248 1.00035 0.75458 0.71194 0.71447 1.93280 1.88907 1.73264 1.47916 1.93285 1.85498 1.37539 1.86934 1.31008 1.17844 1.47824 1.20370 0.86613 1.26041 1.07545 0.89042 0.91734 1.70000 1.39820 1.29935 1.13073 0.85125 0.74338 0.79778 0.80082 1.16991 1.18228 1.18251 0.89189 0.94452 0.90518 0.88655 0.92930 0.90771 0.90001 0.89822 0.95562 0.83591 0.84509 0.91645 0.90196 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 9.03 71.98 0.65 -3.66 16 2 C 0.14 4.72 3.14 44.97 0.14 4.86 16 3 H 0.07 2.74 7.13 -2.39 -0.02 2.72 16 4 C -0.13 -3.40 5.55 30.67 0.17 -3.23 16 5 C -0.09 -2.13 4.87 30.62 0.15 -1.98 16 6 C -0.10 -2.62 2.48 -10.72 -0.03 -2.65 16 7 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 8 C 0.07 1.51 6.18 86.30 0.53 2.05 16 9 N -0.85 -14.88 9.06 -186.71 -1.69 -16.57 16 10 C 0.12 4.25 5.25 86.36 0.45 4.71 16 11 N -1.00 -41.27 3.00 -490.77 -1.47 -42.74 16 12 S 2.72 151.28 4.97 -56.49 -0.28 151.00 16 13 O -1.04 -63.99 16.73 -128.00 -2.14 -66.13 16 14 O -1.04 -64.17 16.73 -128.00 -2.14 -66.32 16 15 C -1.04 -58.58 9.75 67.74 0.66 -57.92 16 16 H 0.12 5.96 7.81 -2.91 -0.02 5.94 16 17 C 0.07 3.91 5.46 84.66 0.46 4.37 16 18 N -0.90 -54.75 13.19 21.45 0.28 -54.47 16 19 Si 0.99 42.01 29.54 68.60 2.03 44.03 16 20 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 23 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.08 1.83 5.74 -2.39 -0.01 1.81 16 26 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.55 6.51 -2.39 -0.02 1.54 16 29 H 0.08 1.78 7.72 -2.39 -0.02 1.77 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.35 4.68 9.08 -89.69 -0.81 3.87 16 33 H 0.34 5.92 8.99 -89.69 -0.81 5.11 16 34 H 0.07 2.50 7.13 -2.38 -0.02 2.48 16 35 H 0.08 2.33 7.49 -2.39 -0.02 2.31 16 36 H 0.30 16.29 8.31 -92.71 -0.77 15.52 16 Total: -1.00 -76.61 299.16 -2.75 -79.36 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.53 Total: 25.28 kcal Atomic # 6 Polarization: -56.64 SS G_CDS: 3.19 Total: -53.44 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -2.88 Total: -113.78 kcal Atomic # 8 Polarization: -128.17 SS G_CDS: -4.28 Total: -132.45 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 151.28 SS G_CDS: -0.28 Total: 151.00 kcal Total: -76.61 -2.75 -79.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083921893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.735 kcal (2) G-P(sol) polarization free energy of solvation -76.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds