Wall clock time and date at job start Mon Mar 30 2020 05:44:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.46498 * 119.99530 * 2 1
4 4 H 1.09007 * 110.01569 * 173.09551 * 3 2 1
5 5 C 1.54262 * 110.03750 * 51.70793 * 3 2 1
6 6 C 1.54888 * 104.19509 * 217.05670 * 5 3 2
7 7 C 1.54885 * 102.75179 * 37.93671 * 6 5 3
8 8 C 1.54214 * 110.06513 * 294.46838 * 3 2 1
9 9 H 1.09001 * 110.08885 * 238.52605 * 8 3 2
10 10 C 1.52997 * 110.14685 * 0.06487 * 8 3 2
11 11 N 1.46902 * 109.47399 * 185.05617 * 10 8 3
12 12 S 1.65595 * 120.00035 * 179.97438 * 2 1 3
13 13 O 1.42101 * 106.40178 * 23.54468 * 12 2 1
14 14 O 1.42103 * 106.40014 * 156.46051 * 12 2 1
15 15 C 1.76197 * 107.22151 * 270.00586 * 12 2 1
16 16 H 1.08003 * 119.99966 * 359.97438 * 15 12 2
17 17 C 1.37876 * 120.00333 * 180.02562 * 15 12 2
18 18 N 1.31524 * 119.99503 * 359.97438 * 17 15 12
19 19 Si 1.86794 * 120.00210 * 179.97438 * 17 15 12
20 20 H 1.48498 * 109.47249 * 59.99596 * 19 17 15
21 21 H 1.48499 * 109.47065 * 179.97438 * 19 17 15
22 22 H 1.48503 * 109.47120 * 299.99715 * 19 17 15
23 23 H 1.09004 * 109.47360 * 96.24091 * 1 2 3
24 24 H 1.08999 * 109.47293 * 216.23989 * 1 2 3
25 25 H 1.09004 * 109.47574 * 336.24420 * 1 2 3
26 26 H 1.08995 * 110.49001 * 98.37494 * 5 3 2
27 27 H 1.09002 * 110.48629 * 335.73184 * 5 3 2
28 28 H 1.09005 * 110.75201 * 279.62320 * 6 5 3
29 29 H 1.08997 * 110.91728 * 156.32902 * 6 5 3
30 30 H 1.09004 * 110.48542 * 80.73464 * 7 6 5
31 31 H 1.08997 * 110.49034 * 203.24918 * 7 6 5
32 32 H 1.09001 * 109.46890 * 305.06111 * 10 8 3
33 33 H 1.09007 * 109.46953 * 65.05615 * 10 8 3
34 34 H 1.00901 * 110.99980 * 180.02562 * 11 10 8
35 35 H 1.00897 * 110.99764 * 303.95401 * 11 10 8
36 36 H 0.97004 * 119.99490 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1974 1.2688 0.0000
4 1 3.2645 1.0836 0.1231
5 6 1.6839 2.1755 1.1375
6 6 1.7255 3.6016 0.5346
7 6 1.2824 3.3664 -0.9308
8 6 1.9423 2.0269 -1.3184
9 1 2.8854 2.2106 -1.8332
10 6 1.0026 1.2203 -2.2168
11 7 0.8657 1.8958 -3.5141
12 16 2.2930 -1.4341 0.0006
13 8 1.4114 -2.4067 -0.5435
14 8 3.5759 -1.1569 -0.5439
15 6 2.5537 -1.8852 1.6838
16 1 2.1872 -1.2494 2.4763
17 6 3.2264 -3.0493 1.9894
18 7 3.6731 -3.8232 1.0243
19 14 3.5034 -3.5271 3.7738
20 1 2.1925 -3.6812 4.4542
21 1 4.2452 -4.8122 3.8327
22 1 4.2922 -2.4681 4.4531
23 1 -0.3634 -0.1117 -1.0216
24 1 -0.3634 -0.8288 0.6075
25 1 -0.3634 0.9406 0.4140
26 1 2.3406 2.1086 2.0047
27 1 0.6632 1.9058 1.4090
28 1 2.7365 4.0074 0.5720
29 1 1.0267 4.2618 1.0482
30 1 0.1969 3.2889 -0.9933
31 1 1.6442 4.1697 -1.5725
32 1 1.4130 0.2220 -2.3684
33 1 0.0242 1.1428 -1.7425
34 1 0.2490 1.3823 -4.1259
35 1 0.5478 2.8460 -3.3953
36 1 4.1461 -4.6424 1.2393
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000084213914.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:44:10
Heat of formation + Delta-G solvation = -85.620684 kcal
Electronic energy + Delta-G solvation = -19440.988627 eV
Core-core repulsion = 16472.524632 eV
Total energy + Delta-G solvation = -2968.463995 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 262.114 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.17156 -35.25403 -34.06449 -33.94956 -33.75072 -33.01491 -28.54740 -27.89278
-26.12379 -25.50233 -22.86181 -20.33851 -19.53200 -18.51450 -17.31010 -16.43968
-15.90433 -15.59271 -15.08880 -14.77675 -14.57748 -14.01250 -13.84592 -13.17971
-12.92216 -12.63738 -12.39083 -11.95632 -11.71936 -11.58069 -11.20350 -11.19532
-11.12957 -10.90286 -10.62235 -10.47474 -10.40294 -10.36990 -10.25524 -10.07371
-9.96862 -9.22876 -8.90030 -8.48169 -8.06336 -6.68120 -5.30556 2.28948
3.08479 3.12913 3.18416 4.05861 4.45802 4.65179 4.70109 4.83375
4.90619 5.11196 5.47361 5.59062 5.64617 5.68515 5.73038 5.74999
5.82119 5.82772 5.94016 6.04121 6.12461 6.17011 6.25088 6.32516
6.38118 6.51547 6.54653 6.55670 6.94724 7.29685 7.34082 7.57801
7.64168 7.98461 8.90206 10.25379
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.029563 B = 0.007516 C = 0.006648
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 946.889245 B = 3724.646566 C = 4210.475972
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.091 3.909
2 N -1.007 6.007
3 C 0.155 3.845
4 H 0.102 0.898
5 C -0.137 4.137
6 C -0.123 4.123
7 C -0.118 4.118
8 C -0.101 4.101
9 H 0.084 0.916
10 C 0.061 3.939
11 N -0.855 5.855
12 S 2.714 3.286
13 O -1.004 7.004
14 O -1.002 7.002
15 C -1.022 5.022
16 H 0.101 0.899
17 C 0.133 3.867
18 N -0.846 5.846
19 Si 0.919 3.081
20 H -0.264 1.264
21 H -0.276 1.276
22 H -0.264 1.264
23 H 0.053 0.947
24 H 0.065 0.935
25 H 0.063 0.937
26 H 0.071 0.929
27 H 0.075 0.925
28 H 0.067 0.933
29 H 0.063 0.937
30 H 0.059 0.941
31 H 0.063 0.937
32 H 0.071 0.929
33 H 0.047 0.953
34 H 0.338 0.662
35 H 0.333 0.667
36 H 0.291 0.709
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.392 12.609 -0.569 14.148
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 N -0.841 5.841
3 C 0.047 3.953
4 H 0.120 0.880
5 C -0.176 4.176
6 C -0.161 4.161
7 C -0.156 4.156
8 C -0.122 4.122
9 H 0.102 0.898
10 C -0.069 4.069
11 N -0.384 5.384
12 S 2.815 3.185
13 O -0.995 6.995
14 O -0.992 6.992
15 C -1.155 5.155
16 H 0.119 0.881
17 C -0.085 4.085
18 N -0.476 5.476
19 Si 0.743 3.257
20 H -0.189 1.189
21 H -0.201 1.201
22 H -0.188 1.188
23 H 0.071 0.929
24 H 0.084 0.916
25 H 0.082 0.918
26 H 0.089 0.911
27 H 0.094 0.906
28 H 0.086 0.914
29 H 0.081 0.919
30 H 0.078 0.922
31 H 0.082 0.918
32 H 0.089 0.911
33 H 0.065 0.935
34 H 0.150 0.850
35 H 0.145 0.855
36 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -5.263 11.832 -1.512 13.037
hybrid contribution -0.902 -0.152 1.846 2.060
sum -6.165 11.680 0.334 13.211
Atomic orbital electron populations
1.21570 0.80793 1.01981 1.01100 1.57988 1.13812 1.21643 1.90678
1.21448 0.97100 0.83689 0.93046 0.87961 1.22796 1.02330 0.94180
0.98287 1.22443 1.01252 0.96774 0.95624 1.22416 0.99740 0.97009
0.96394 1.22231 0.99698 0.94446 0.95821 0.89783 1.22308 0.98523
0.97868 0.88210 1.58724 1.58424 1.06345 1.14865 1.00559 0.71805
0.69666 0.76469 1.93353 1.67292 1.57876 1.80955 1.93359 1.40941
1.84032 1.80912 1.30626 1.50160 1.16861 1.17891 0.88057 1.24755
0.90161 0.93408 1.00201 1.69898 1.31027 1.12807 1.33881 0.86222
0.79254 0.78278 0.81932 1.18890 1.20088 1.18847 0.92888 0.91648
0.91810 0.91062 0.90623 0.91392 0.91865 0.92198 0.91819 0.91051
0.93491 0.85048 0.85494 0.89845
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.51 8.05 59.85 0.48 1.99 16
2 N -1.01 -20.06 2.04 -113.22 -0.23 -20.29 16
3 C 0.16 2.69 3.23 -66.64 -0.22 2.47 16
4 H 0.10 1.98 7.09 -51.93 -0.37 1.61 16
5 C -0.14 -1.90 6.33 -25.07 -0.16 -2.06 16
6 C -0.12 -1.38 6.91 -24.74 -0.17 -1.55 16
7 C -0.12 -1.35 5.56 -25.07 -0.14 -1.49 16
8 C -0.10 -1.52 3.14 -89.32 -0.28 -1.80 16
9 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16
10 C 0.06 0.93 4.43 -3.82 -0.02 0.92 16
11 N -0.85 -11.01 9.62 -10.37 -0.10 -11.11 16
12 S 2.71 72.48 4.93 -107.50 -0.53 71.95 16
13 O -1.00 -29.44 17.21 -57.17 -0.98 -30.43 16
14 O -1.00 -29.42 16.68 -57.17 -0.95 -30.38 16
15 C -1.02 -28.35 9.75 30.60 0.30 -28.05 16
16 H 0.10 2.57 7.81 -52.48 -0.41 2.16 16
17 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16
18 N -0.85 -25.21 13.19 55.43 0.73 -24.48 16
19 Si 0.92 20.72 29.54 -169.99 -5.02 15.70 16
20 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16
21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16
22 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16
23 H 0.05 0.83 5.70 -51.93 -0.30 0.53 16
24 H 0.06 1.13 8.01 -51.93 -0.42 0.71 16
25 H 0.06 0.84 5.97 -51.93 -0.31 0.53 16
26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16
27 H 0.08 1.00 5.82 -51.93 -0.30 0.70 16
28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
30 H 0.06 0.64 7.76 -51.93 -0.40 0.23 16
31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
32 H 0.07 1.35 7.58 -51.93 -0.39 0.96 16
33 H 0.05 0.66 4.63 -51.92 -0.24 0.42 16
34 H 0.34 3.84 9.08 -39.29 -0.36 3.48 16
35 H 0.33 3.54 8.24 -39.29 -0.32 3.22 16
36 H 0.29 7.80 8.31 -40.82 -0.34 7.46 16
LS Contribution 294.11 15.07 4.43 4.43
Total: -1.00 -34.48 294.11 -8.02 -42.50
By element:
Atomic # 1 Polarization: 13.09 SS G_CDS: -5.07 Total: 8.02 kcal
Atomic # 6 Polarization: -25.62 SS G_CDS: -0.30 Total: -25.92 kcal
Atomic # 7 Polarization: -56.27 SS G_CDS: 0.40 Total: -55.87 kcal
Atomic # 8 Polarization: -58.87 SS G_CDS: -1.94 Total: -60.81 kcal
Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal
Atomic # 16 Polarization: 72.48 SS G_CDS: -0.53 Total: 71.95 kcal
Total LS contribution 4.43 Total: 4.43 kcal
Total: -34.48 -8.02 -42.50 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084213914.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.120 kcal
(2) G-P(sol) polarization free energy of solvation -34.477 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.596 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.621 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds