Wall clock time and date at job start Mon Mar 30 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 119.99530 * 2 1 4 4 H 1.09007 * 110.01569 * 173.09551 * 3 2 1 5 5 C 1.54262 * 110.03750 * 51.70793 * 3 2 1 6 6 C 1.54888 * 104.19509 * 217.05670 * 5 3 2 7 7 C 1.54885 * 102.75179 * 37.93671 * 6 5 3 8 8 C 1.54214 * 110.06513 * 294.46838 * 3 2 1 9 9 H 1.09001 * 110.08885 * 238.52605 * 8 3 2 10 10 C 1.52997 * 110.14685 * 0.06487 * 8 3 2 11 11 N 1.46902 * 109.47399 * 185.05617 * 10 8 3 12 12 S 1.65595 * 120.00035 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40178 * 23.54468 * 12 2 1 14 14 O 1.42103 * 106.40014 * 156.46051 * 12 2 1 15 15 C 1.76197 * 107.22151 * 270.00586 * 12 2 1 16 16 H 1.08003 * 119.99966 * 359.97438 * 15 12 2 17 17 C 1.37876 * 120.00333 * 180.02562 * 15 12 2 18 18 N 1.31524 * 119.99503 * 359.97438 * 17 15 12 19 19 Si 1.86794 * 120.00210 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47249 * 59.99596 * 19 17 15 21 21 H 1.48499 * 109.47065 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47120 * 299.99715 * 19 17 15 23 23 H 1.09004 * 109.47360 * 96.24091 * 1 2 3 24 24 H 1.08999 * 109.47293 * 216.23989 * 1 2 3 25 25 H 1.09004 * 109.47574 * 336.24420 * 1 2 3 26 26 H 1.08995 * 110.49001 * 98.37494 * 5 3 2 27 27 H 1.09002 * 110.48629 * 335.73184 * 5 3 2 28 28 H 1.09005 * 110.75201 * 279.62320 * 6 5 3 29 29 H 1.08997 * 110.91728 * 156.32902 * 6 5 3 30 30 H 1.09004 * 110.48542 * 80.73464 * 7 6 5 31 31 H 1.08997 * 110.49034 * 203.24918 * 7 6 5 32 32 H 1.09001 * 109.46890 * 305.06111 * 10 8 3 33 33 H 1.09007 * 109.46953 * 65.05615 * 10 8 3 34 34 H 1.00901 * 110.99980 * 180.02562 * 11 10 8 35 35 H 1.00897 * 110.99764 * 303.95401 * 11 10 8 36 36 H 0.97004 * 119.99490 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 1 3.2645 1.0836 0.1231 5 6 1.6839 2.1755 1.1375 6 6 1.7255 3.6016 0.5346 7 6 1.2824 3.3664 -0.9308 8 6 1.9423 2.0269 -1.3184 9 1 2.8854 2.2106 -1.8332 10 6 1.0026 1.2203 -2.2168 11 7 0.8657 1.8958 -3.5141 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4067 -0.5435 14 8 3.5759 -1.1569 -0.5439 15 6 2.5537 -1.8852 1.6838 16 1 2.1872 -1.2494 2.4763 17 6 3.2264 -3.0493 1.9894 18 7 3.6731 -3.8232 1.0243 19 14 3.5034 -3.5271 3.7738 20 1 2.1925 -3.6812 4.4542 21 1 4.2452 -4.8122 3.8327 22 1 4.2922 -2.4681 4.4531 23 1 -0.3634 -0.1117 -1.0216 24 1 -0.3634 -0.8288 0.6075 25 1 -0.3634 0.9406 0.4140 26 1 2.3406 2.1086 2.0047 27 1 0.6632 1.9058 1.4090 28 1 2.7365 4.0074 0.5720 29 1 1.0267 4.2618 1.0482 30 1 0.1969 3.2889 -0.9933 31 1 1.6442 4.1697 -1.5725 32 1 1.4130 0.2220 -2.3684 33 1 0.0242 1.1428 -1.7425 34 1 0.2490 1.3823 -4.1259 35 1 0.5478 2.8460 -3.3953 36 1 4.1461 -4.6424 1.2393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084213914.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:10 Heat of formation + Delta-G solvation = -85.620684 kcal Electronic energy + Delta-G solvation = -19440.988627 eV Core-core repulsion = 16472.524632 eV Total energy + Delta-G solvation = -2968.463995 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.17156 -35.25403 -34.06449 -33.94956 -33.75072 -33.01491 -28.54740 -27.89278 -26.12379 -25.50233 -22.86181 -20.33851 -19.53200 -18.51450 -17.31010 -16.43968 -15.90433 -15.59271 -15.08880 -14.77675 -14.57748 -14.01250 -13.84592 -13.17971 -12.92216 -12.63738 -12.39083 -11.95632 -11.71936 -11.58069 -11.20350 -11.19532 -11.12957 -10.90286 -10.62235 -10.47474 -10.40294 -10.36990 -10.25524 -10.07371 -9.96862 -9.22876 -8.90030 -8.48169 -8.06336 -6.68120 -5.30556 2.28948 3.08479 3.12913 3.18416 4.05861 4.45802 4.65179 4.70109 4.83375 4.90619 5.11196 5.47361 5.59062 5.64617 5.68515 5.73038 5.74999 5.82119 5.82772 5.94016 6.04121 6.12461 6.17011 6.25088 6.32516 6.38118 6.51547 6.54653 6.55670 6.94724 7.29685 7.34082 7.57801 7.64168 7.98461 8.90206 10.25379 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029563 B = 0.007516 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.889245 B = 3724.646566 C = 4210.475972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.007 6.007 3 C 0.155 3.845 4 H 0.102 0.898 5 C -0.137 4.137 6 C -0.123 4.123 7 C -0.118 4.118 8 C -0.101 4.101 9 H 0.084 0.916 10 C 0.061 3.939 11 N -0.855 5.855 12 S 2.714 3.286 13 O -1.004 7.004 14 O -1.002 7.002 15 C -1.022 5.022 16 H 0.101 0.899 17 C 0.133 3.867 18 N -0.846 5.846 19 Si 0.919 3.081 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.264 1.264 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.338 0.662 35 H 0.333 0.667 36 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.392 12.609 -0.569 14.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.841 5.841 3 C 0.047 3.953 4 H 0.120 0.880 5 C -0.176 4.176 6 C -0.161 4.161 7 C -0.156 4.156 8 C -0.122 4.122 9 H 0.102 0.898 10 C -0.069 4.069 11 N -0.384 5.384 12 S 2.815 3.185 13 O -0.995 6.995 14 O -0.992 6.992 15 C -1.155 5.155 16 H 0.119 0.881 17 C -0.085 4.085 18 N -0.476 5.476 19 Si 0.743 3.257 20 H -0.189 1.189 21 H -0.201 1.201 22 H -0.188 1.188 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.263 11.832 -1.512 13.037 hybrid contribution -0.902 -0.152 1.846 2.060 sum -6.165 11.680 0.334 13.211 Atomic orbital electron populations 1.21570 0.80793 1.01981 1.01100 1.57988 1.13812 1.21643 1.90678 1.21448 0.97100 0.83689 0.93046 0.87961 1.22796 1.02330 0.94180 0.98287 1.22443 1.01252 0.96774 0.95624 1.22416 0.99740 0.97009 0.96394 1.22231 0.99698 0.94446 0.95821 0.89783 1.22308 0.98523 0.97868 0.88210 1.58724 1.58424 1.06345 1.14865 1.00559 0.71805 0.69666 0.76469 1.93353 1.67292 1.57876 1.80955 1.93359 1.40941 1.84032 1.80912 1.30626 1.50160 1.16861 1.17891 0.88057 1.24755 0.90161 0.93408 1.00201 1.69898 1.31027 1.12807 1.33881 0.86222 0.79254 0.78278 0.81932 1.18890 1.20088 1.18847 0.92888 0.91648 0.91810 0.91062 0.90623 0.91392 0.91865 0.92198 0.91819 0.91051 0.93491 0.85048 0.85494 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.51 8.05 59.85 0.48 1.99 16 2 N -1.01 -20.06 2.04 -113.22 -0.23 -20.29 16 3 C 0.16 2.69 3.23 -66.64 -0.22 2.47 16 4 H 0.10 1.98 7.09 -51.93 -0.37 1.61 16 5 C -0.14 -1.90 6.33 -25.07 -0.16 -2.06 16 6 C -0.12 -1.38 6.91 -24.74 -0.17 -1.55 16 7 C -0.12 -1.35 5.56 -25.07 -0.14 -1.49 16 8 C -0.10 -1.52 3.14 -89.32 -0.28 -1.80 16 9 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 10 C 0.06 0.93 4.43 -3.82 -0.02 0.92 16 11 N -0.85 -11.01 9.62 -10.37 -0.10 -11.11 16 12 S 2.71 72.48 4.93 -107.50 -0.53 71.95 16 13 O -1.00 -29.44 17.21 -57.17 -0.98 -30.43 16 14 O -1.00 -29.42 16.68 -57.17 -0.95 -30.38 16 15 C -1.02 -28.35 9.75 30.60 0.30 -28.05 16 16 H 0.10 2.57 7.81 -52.48 -0.41 2.16 16 17 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 18 N -0.85 -25.21 13.19 55.43 0.73 -24.48 16 19 Si 0.92 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 23 H 0.05 0.83 5.70 -51.93 -0.30 0.53 16 24 H 0.06 1.13 8.01 -51.93 -0.42 0.71 16 25 H 0.06 0.84 5.97 -51.93 -0.31 0.53 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.00 5.82 -51.93 -0.30 0.70 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.64 7.76 -51.93 -0.40 0.23 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.35 7.58 -51.93 -0.39 0.96 16 33 H 0.05 0.66 4.63 -51.92 -0.24 0.42 16 34 H 0.34 3.84 9.08 -39.29 -0.36 3.48 16 35 H 0.33 3.54 8.24 -39.29 -0.32 3.22 16 36 H 0.29 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 294.11 15.07 4.43 4.43 Total: -1.00 -34.48 294.11 -8.02 -42.50 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.07 Total: 8.02 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -0.30 Total: -25.92 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.40 Total: -55.87 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: -1.94 Total: -60.81 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 72.48 SS G_CDS: -0.53 Total: 71.95 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.48 -8.02 -42.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084213914.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.120 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds