Wall clock time and date at job start Mon Mar 30 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 119.99530 * 2 1 4 4 H 1.09007 * 110.01569 * 173.09551 * 3 2 1 5 5 C 1.54262 * 110.03750 * 51.70793 * 3 2 1 6 6 C 1.54888 * 104.19509 * 217.05670 * 5 3 2 7 7 C 1.54885 * 102.75179 * 37.93671 * 6 5 3 8 8 C 1.54214 * 110.06513 * 294.46838 * 3 2 1 9 9 H 1.09001 * 110.08885 * 238.52605 * 8 3 2 10 10 C 1.52997 * 110.14685 * 0.06487 * 8 3 2 11 11 N 1.46902 * 109.47399 * 185.05617 * 10 8 3 12 12 S 1.65595 * 120.00035 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40178 * 23.54468 * 12 2 1 14 14 O 1.42103 * 106.40014 * 156.46051 * 12 2 1 15 15 C 1.76197 * 107.22151 * 270.00586 * 12 2 1 16 16 H 1.08003 * 119.99966 * 359.97438 * 15 12 2 17 17 C 1.37876 * 120.00333 * 180.02562 * 15 12 2 18 18 N 1.31524 * 119.99503 * 359.97438 * 17 15 12 19 19 Si 1.86794 * 120.00210 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.47249 * 59.99596 * 19 17 15 21 21 H 1.48499 * 109.47065 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47120 * 299.99715 * 19 17 15 23 23 H 1.09004 * 109.47360 * 96.24091 * 1 2 3 24 24 H 1.08999 * 109.47293 * 216.23989 * 1 2 3 25 25 H 1.09004 * 109.47574 * 336.24420 * 1 2 3 26 26 H 1.08995 * 110.49001 * 98.37494 * 5 3 2 27 27 H 1.09002 * 110.48629 * 335.73184 * 5 3 2 28 28 H 1.09005 * 110.75201 * 279.62320 * 6 5 3 29 29 H 1.08997 * 110.91728 * 156.32902 * 6 5 3 30 30 H 1.09004 * 110.48542 * 80.73464 * 7 6 5 31 31 H 1.08997 * 110.49034 * 203.24918 * 7 6 5 32 32 H 1.09001 * 109.46890 * 305.06111 * 10 8 3 33 33 H 1.09007 * 109.46953 * 65.05615 * 10 8 3 34 34 H 1.00901 * 110.99980 * 180.02562 * 11 10 8 35 35 H 1.00897 * 110.99764 * 303.95401 * 11 10 8 36 36 H 0.97004 * 119.99490 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 1 3.2645 1.0836 0.1231 5 6 1.6839 2.1755 1.1375 6 6 1.7255 3.6016 0.5346 7 6 1.2824 3.3664 -0.9308 8 6 1.9423 2.0269 -1.3184 9 1 2.8854 2.2106 -1.8332 10 6 1.0026 1.2203 -2.2168 11 7 0.8657 1.8958 -3.5141 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4067 -0.5435 14 8 3.5759 -1.1569 -0.5439 15 6 2.5537 -1.8852 1.6838 16 1 2.1872 -1.2494 2.4763 17 6 3.2264 -3.0493 1.9894 18 7 3.6731 -3.8232 1.0243 19 14 3.5034 -3.5271 3.7738 20 1 2.1925 -3.6812 4.4542 21 1 4.2452 -4.8122 3.8327 22 1 4.2922 -2.4681 4.4531 23 1 -0.3634 -0.1117 -1.0216 24 1 -0.3634 -0.8288 0.6075 25 1 -0.3634 0.9406 0.4140 26 1 2.3406 2.1086 2.0047 27 1 0.6632 1.9058 1.4090 28 1 2.7365 4.0074 0.5720 29 1 1.0267 4.2618 1.0482 30 1 0.1969 3.2889 -0.9933 31 1 1.6442 4.1697 -1.5725 32 1 1.4130 0.2220 -2.3684 33 1 0.0242 1.1428 -1.7425 34 1 0.2490 1.3823 -4.1259 35 1 0.5478 2.8460 -3.3953 36 1 4.1461 -4.6424 1.2393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084213914.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:10 Heat of formation + Delta-G solvation = -114.286832 kcal Electronic energy + Delta-G solvation = -19442.231684 eV Core-core repulsion = 16472.524632 eV Total energy + Delta-G solvation = -2969.707053 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.40522 -37.46262 -36.14924 -35.45803 -35.16028 -34.85563 -29.65400 -29.12199 -28.27833 -26.85328 -24.06197 -21.45157 -21.07928 -20.32511 -19.04794 -18.38630 -17.29640 -17.14570 -16.55588 -16.31642 -16.01247 -15.64625 -15.45150 -14.69749 -14.11697 -14.01245 -13.88519 -13.67012 -13.34231 -13.09705 -13.02889 -12.87788 -12.51739 -12.37540 -12.34895 -12.34499 -11.90135 -11.80325 -11.51318 -11.46966 -11.31270 -11.26095 -10.96739 -9.79478 -9.40941 -8.76199 -7.51431 0.30389 1.30910 1.33514 1.46677 2.18309 2.55184 2.81608 3.54615 3.66832 3.78223 3.81339 4.02701 4.19891 4.28885 4.43485 4.49270 4.55326 4.59844 4.66450 4.73567 4.80779 4.85358 4.97930 5.03111 5.12678 5.16403 5.24675 5.28012 5.40610 5.53899 5.57077 5.88035 6.05232 6.25502 6.69054 6.75205 8.18496 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029563 B = 0.007516 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.889245 B = 3724.646566 C = 4210.475972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.998 5.998 3 C 0.141 3.859 4 H 0.068 0.932 5 C -0.133 4.133 6 C -0.114 4.114 7 C -0.106 4.106 8 C -0.101 4.101 9 H 0.065 0.935 10 C 0.063 3.937 11 N -0.858 5.858 12 S 2.715 3.285 13 O -1.043 7.043 14 O -1.044 7.044 15 C -1.043 5.043 16 H 0.120 0.880 17 C 0.067 3.933 18 N -0.897 5.897 19 Si 0.990 3.010 20 H -0.248 1.248 21 H -0.263 1.263 22 H -0.249 1.249 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.108 0.892 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.024 0.976 33 H 0.065 0.935 34 H 0.347 0.653 35 H 0.351 0.649 36 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.944 15.004 1.142 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.836 5.836 3 C 0.034 3.966 4 H 0.086 0.914 5 C -0.172 4.172 6 C -0.152 4.152 7 C -0.144 4.144 8 C -0.122 4.122 9 H 0.083 0.917 10 C -0.067 4.067 11 N -0.390 5.390 12 S 2.818 3.182 13 O -1.033 7.033 14 O -1.034 7.034 15 C -1.176 5.176 16 H 0.138 0.862 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.808 3.192 20 H -0.172 1.172 21 H -0.187 1.187 22 H -0.173 1.173 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.126 0.874 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.826 14.246 0.172 15.798 hybrid contribution -0.435 -0.839 1.222 1.545 sum -7.261 13.407 1.394 15.310 Atomic orbital electron populations 1.21867 0.78389 1.03973 1.01933 1.57391 1.15128 1.20425 1.90669 1.21747 0.95347 0.83154 0.96334 0.91375 1.22798 1.02598 0.95092 0.96734 1.22439 1.02397 0.95131 0.95196 1.22377 1.00510 0.94700 0.96802 1.22198 0.99387 0.96341 0.94287 0.91653 1.22161 0.99048 0.95862 0.89648 1.58598 1.59275 1.07346 1.13744 1.00082 0.71170 0.70612 0.76332 1.93285 1.67824 1.60547 1.81639 1.93290 1.43444 1.85010 1.81652 1.31005 1.50292 1.17565 1.18762 0.86235 1.26081 0.89399 0.93199 1.05820 1.70005 1.32309 1.13785 1.36776 0.85170 0.80190 0.78768 0.75118 1.17158 1.18720 1.17278 0.92101 0.92650 0.87394 0.91395 0.89356 0.91138 0.88904 0.90294 0.90024 0.95781 0.91716 0.84033 0.83521 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.64 8.05 127.77 1.03 3.67 16 2 N -1.00 -40.25 2.04 -512.12 -1.05 -41.29 16 3 C 0.14 4.89 3.23 45.83 0.15 5.03 16 4 H 0.07 2.79 7.09 -2.38 -0.02 2.77 16 5 C -0.13 -3.37 6.33 31.67 0.20 -3.17 16 6 C -0.11 -2.09 6.91 31.88 0.22 -1.87 16 7 C -0.11 -2.02 5.56 31.67 0.18 -1.85 16 8 C -0.10 -2.95 3.14 -9.95 -0.03 -2.99 16 9 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 10 C 0.06 1.91 4.43 86.30 0.38 2.29 16 11 N -0.86 -20.89 9.62 -186.71 -1.80 -22.68 16 12 S 2.72 151.41 4.93 -56.49 -0.28 151.13 16 13 O -1.04 -64.07 17.21 -128.00 -2.20 -66.27 16 14 O -1.04 -65.07 16.68 -128.00 -2.14 -67.21 16 15 C -1.04 -58.91 9.75 67.73 0.66 -58.25 16 16 H 0.12 6.05 7.81 -2.91 -0.02 6.02 16 17 C 0.07 3.84 5.46 84.65 0.46 4.31 16 18 N -0.90 -55.17 13.19 21.45 0.28 -54.89 16 19 Si 0.99 41.91 29.54 68.60 2.03 43.93 16 20 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 22 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 23 H 0.06 1.85 5.70 -2.38 -0.01 1.83 16 24 H 0.05 1.88 8.01 -2.39 -0.02 1.86 16 25 H 0.11 2.47 5.97 -2.38 -0.01 2.46 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.09 2.00 5.82 -2.39 -0.01 1.99 16 28 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.26 7.76 -2.38 -0.02 1.24 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.02 0.94 7.58 -2.39 -0.02 0.92 16 33 H 0.07 1.69 4.63 -2.38 -0.01 1.68 16 34 H 0.35 7.44 9.08 -89.69 -0.81 6.63 16 35 H 0.35 6.45 8.24 -89.70 -0.74 5.72 16 36 H 0.30 16.50 8.31 -92.71 -0.77 15.73 16 Total: -1.00 -79.24 294.11 -2.35 -81.59 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: -0.45 Total: 28.52 kcal Atomic # 6 Polarization: -56.07 SS G_CDS: 3.25 Total: -52.83 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -2.56 Total: -118.86 kcal Atomic # 8 Polarization: -129.14 SS G_CDS: -4.34 Total: -133.48 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 151.41 SS G_CDS: -0.28 Total: 151.13 kcal Total: -79.24 -2.35 -81.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084213914.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.696 kcal (2) G-P(sol) polarization free energy of solvation -79.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds