Wall clock time and date at job start Mon Mar 30 2020 05:44:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.46498 * 119.99530 * 2 1
4 4 H 1.09007 * 110.01569 * 173.09551 * 3 2 1
5 5 C 1.54262 * 110.03750 * 51.70793 * 3 2 1
6 6 C 1.54888 * 104.19509 * 217.05670 * 5 3 2
7 7 C 1.54885 * 102.75179 * 37.93671 * 6 5 3
8 8 C 1.54214 * 110.06513 * 294.46838 * 3 2 1
9 9 H 1.09001 * 110.08885 * 238.52605 * 8 3 2
10 10 C 1.52997 * 110.14685 * 0.06487 * 8 3 2
11 11 N 1.46902 * 109.47399 * 185.05617 * 10 8 3
12 12 S 1.65595 * 120.00035 * 179.97438 * 2 1 3
13 13 O 1.42101 * 106.40178 * 23.54468 * 12 2 1
14 14 O 1.42103 * 106.40014 * 156.46051 * 12 2 1
15 15 C 1.76197 * 107.22151 * 270.00586 * 12 2 1
16 16 H 1.08003 * 119.99966 * 359.97438 * 15 12 2
17 17 C 1.37876 * 120.00333 * 180.02562 * 15 12 2
18 18 N 1.31524 * 119.99503 * 359.97438 * 17 15 12
19 19 Si 1.86794 * 120.00210 * 179.97438 * 17 15 12
20 20 H 1.48498 * 109.47249 * 59.99596 * 19 17 15
21 21 H 1.48499 * 109.47065 * 179.97438 * 19 17 15
22 22 H 1.48503 * 109.47120 * 299.99715 * 19 17 15
23 23 H 1.09004 * 109.47360 * 96.24091 * 1 2 3
24 24 H 1.08999 * 109.47293 * 216.23989 * 1 2 3
25 25 H 1.09004 * 109.47574 * 336.24420 * 1 2 3
26 26 H 1.08995 * 110.49001 * 98.37494 * 5 3 2
27 27 H 1.09002 * 110.48629 * 335.73184 * 5 3 2
28 28 H 1.09005 * 110.75201 * 279.62320 * 6 5 3
29 29 H 1.08997 * 110.91728 * 156.32902 * 6 5 3
30 30 H 1.09004 * 110.48542 * 80.73464 * 7 6 5
31 31 H 1.08997 * 110.49034 * 203.24918 * 7 6 5
32 32 H 1.09001 * 109.46890 * 305.06111 * 10 8 3
33 33 H 1.09007 * 109.46953 * 65.05615 * 10 8 3
34 34 H 1.00901 * 110.99980 * 180.02562 * 11 10 8
35 35 H 1.00897 * 110.99764 * 303.95401 * 11 10 8
36 36 H 0.97004 * 119.99490 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1974 1.2688 0.0000
4 1 3.2645 1.0836 0.1231
5 6 1.6839 2.1755 1.1375
6 6 1.7255 3.6016 0.5346
7 6 1.2824 3.3664 -0.9308
8 6 1.9423 2.0269 -1.3184
9 1 2.8854 2.2106 -1.8332
10 6 1.0026 1.2203 -2.2168
11 7 0.8657 1.8958 -3.5141
12 16 2.2930 -1.4341 0.0006
13 8 1.4114 -2.4067 -0.5435
14 8 3.5759 -1.1569 -0.5439
15 6 2.5537 -1.8852 1.6838
16 1 2.1872 -1.2494 2.4763
17 6 3.2264 -3.0493 1.9894
18 7 3.6731 -3.8232 1.0243
19 14 3.5034 -3.5271 3.7738
20 1 2.1925 -3.6812 4.4542
21 1 4.2452 -4.8122 3.8327
22 1 4.2922 -2.4681 4.4531
23 1 -0.3634 -0.1117 -1.0216
24 1 -0.3634 -0.8288 0.6075
25 1 -0.3634 0.9406 0.4140
26 1 2.3406 2.1086 2.0047
27 1 0.6632 1.9058 1.4090
28 1 2.7365 4.0074 0.5720
29 1 1.0267 4.2618 1.0482
30 1 0.1969 3.2889 -0.9933
31 1 1.6442 4.1697 -1.5725
32 1 1.4130 0.2220 -2.3684
33 1 0.0242 1.1428 -1.7425
34 1 0.2490 1.3823 -4.1259
35 1 0.5478 2.8460 -3.3953
36 1 4.1461 -4.6424 1.2393
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000084213914.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:44:10
Heat of formation + Delta-G solvation = -114.286832 kcal
Electronic energy + Delta-G solvation = -19442.231684 eV
Core-core repulsion = 16472.524632 eV
Total energy + Delta-G solvation = -2969.707053 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 262.114 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.40522 -37.46262 -36.14924 -35.45803 -35.16028 -34.85563 -29.65400 -29.12199
-28.27833 -26.85328 -24.06197 -21.45157 -21.07928 -20.32511 -19.04794 -18.38630
-17.29640 -17.14570 -16.55588 -16.31642 -16.01247 -15.64625 -15.45150 -14.69749
-14.11697 -14.01245 -13.88519 -13.67012 -13.34231 -13.09705 -13.02889 -12.87788
-12.51739 -12.37540 -12.34895 -12.34499 -11.90135 -11.80325 -11.51318 -11.46966
-11.31270 -11.26095 -10.96739 -9.79478 -9.40941 -8.76199 -7.51431 0.30389
1.30910 1.33514 1.46677 2.18309 2.55184 2.81608 3.54615 3.66832
3.78223 3.81339 4.02701 4.19891 4.28885 4.43485 4.49270 4.55326
4.59844 4.66450 4.73567 4.80779 4.85358 4.97930 5.03111 5.12678
5.16403 5.24675 5.28012 5.40610 5.53899 5.57077 5.88035 6.05232
6.25502 6.69054 6.75205 8.18496
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.029563 B = 0.007516 C = 0.006648
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 946.889245 B = 3724.646566 C = 4210.475972
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.083 3.917
2 N -0.998 5.998
3 C 0.141 3.859
4 H 0.068 0.932
5 C -0.133 4.133
6 C -0.114 4.114
7 C -0.106 4.106
8 C -0.101 4.101
9 H 0.065 0.935
10 C 0.063 3.937
11 N -0.858 5.858
12 S 2.715 3.285
13 O -1.043 7.043
14 O -1.044 7.044
15 C -1.043 5.043
16 H 0.120 0.880
17 C 0.067 3.933
18 N -0.897 5.897
19 Si 0.990 3.010
20 H -0.248 1.248
21 H -0.263 1.263
22 H -0.249 1.249
23 H 0.061 0.939
24 H 0.055 0.945
25 H 0.108 0.892
26 H 0.067 0.933
27 H 0.088 0.912
28 H 0.070 0.930
29 H 0.092 0.908
30 H 0.078 0.922
31 H 0.081 0.919
32 H 0.024 0.976
33 H 0.065 0.935
34 H 0.347 0.653
35 H 0.351 0.649
36 H 0.299 0.701
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.944 15.004 1.142 17.016
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.836 5.836
3 C 0.034 3.966
4 H 0.086 0.914
5 C -0.172 4.172
6 C -0.152 4.152
7 C -0.144 4.144
8 C -0.122 4.122
9 H 0.083 0.917
10 C -0.067 4.067
11 N -0.390 5.390
12 S 2.818 3.182
13 O -1.033 7.033
14 O -1.034 7.034
15 C -1.176 5.176
16 H 0.138 0.862
17 C -0.145 4.145
18 N -0.529 5.529
19 Si 0.808 3.192
20 H -0.172 1.172
21 H -0.187 1.187
22 H -0.173 1.173
23 H 0.079 0.921
24 H 0.073 0.927
25 H 0.126 0.874
26 H 0.086 0.914
27 H 0.106 0.894
28 H 0.089 0.911
29 H 0.111 0.889
30 H 0.097 0.903
31 H 0.100 0.900
32 H 0.042 0.958
33 H 0.083 0.917
34 H 0.160 0.840
35 H 0.165 0.835
36 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -6.826 14.246 0.172 15.798
hybrid contribution -0.435 -0.839 1.222 1.545
sum -7.261 13.407 1.394 15.310
Atomic orbital electron populations
1.21867 0.78389 1.03973 1.01933 1.57391 1.15128 1.20425 1.90669
1.21747 0.95347 0.83154 0.96334 0.91375 1.22798 1.02598 0.95092
0.96734 1.22439 1.02397 0.95131 0.95196 1.22377 1.00510 0.94700
0.96802 1.22198 0.99387 0.96341 0.94287 0.91653 1.22161 0.99048
0.95862 0.89648 1.58598 1.59275 1.07346 1.13744 1.00082 0.71170
0.70612 0.76332 1.93285 1.67824 1.60547 1.81639 1.93290 1.43444
1.85010 1.81652 1.31005 1.50292 1.17565 1.18762 0.86235 1.26081
0.89399 0.93199 1.05820 1.70005 1.32309 1.13785 1.36776 0.85170
0.80190 0.78768 0.75118 1.17158 1.18720 1.17278 0.92101 0.92650
0.87394 0.91395 0.89356 0.91138 0.88904 0.90294 0.90024 0.95781
0.91716 0.84033 0.83521 0.89112
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 2.64 8.05 127.77 1.03 3.67 16
2 N -1.00 -40.25 2.04 -512.12 -1.05 -41.29 16
3 C 0.14 4.89 3.23 45.83 0.15 5.03 16
4 H 0.07 2.79 7.09 -2.38 -0.02 2.77 16
5 C -0.13 -3.37 6.33 31.67 0.20 -3.17 16
6 C -0.11 -2.09 6.91 31.88 0.22 -1.87 16
7 C -0.11 -2.02 5.56 31.67 0.18 -1.85 16
8 C -0.10 -2.95 3.14 -9.95 -0.03 -2.99 16
9 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16
10 C 0.06 1.91 4.43 86.30 0.38 2.29 16
11 N -0.86 -20.89 9.62 -186.71 -1.80 -22.68 16
12 S 2.72 151.41 4.93 -56.49 -0.28 151.13 16
13 O -1.04 -64.07 17.21 -128.00 -2.20 -66.27 16
14 O -1.04 -65.07 16.68 -128.00 -2.14 -67.21 16
15 C -1.04 -58.91 9.75 67.73 0.66 -58.25 16
16 H 0.12 6.05 7.81 -2.91 -0.02 6.02 16
17 C 0.07 3.84 5.46 84.65 0.46 4.31 16
18 N -0.90 -55.17 13.19 21.45 0.28 -54.89 16
19 Si 0.99 41.91 29.54 68.60 2.03 43.93 16
20 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16
21 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16
22 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16
23 H 0.06 1.85 5.70 -2.38 -0.01 1.83 16
24 H 0.05 1.88 8.01 -2.39 -0.02 1.86 16
25 H 0.11 2.47 5.97 -2.38 -0.01 2.46 16
26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
27 H 0.09 2.00 5.82 -2.39 -0.01 1.99 16
28 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16
29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16
30 H 0.08 1.26 7.76 -2.38 -0.02 1.24 16
31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16
32 H 0.02 0.94 7.58 -2.39 -0.02 0.92 16
33 H 0.07 1.69 4.63 -2.38 -0.01 1.68 16
34 H 0.35 7.44 9.08 -89.69 -0.81 6.63 16
35 H 0.35 6.45 8.24 -89.70 -0.74 5.72 16
36 H 0.30 16.50 8.31 -92.71 -0.77 15.73 16
Total: -1.00 -79.24 294.11 -2.35 -81.59
By element:
Atomic # 1 Polarization: 28.97 SS G_CDS: -0.45 Total: 28.52 kcal
Atomic # 6 Polarization: -56.07 SS G_CDS: 3.25 Total: -52.83 kcal
Atomic # 7 Polarization: -116.30 SS G_CDS: -2.56 Total: -118.86 kcal
Atomic # 8 Polarization: -129.14 SS G_CDS: -4.34 Total: -133.48 kcal
Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal
Atomic # 16 Polarization: 151.41 SS G_CDS: -0.28 Total: 151.13 kcal
Total: -79.24 -2.35 -81.59 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084213914.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.696 kcal
(2) G-P(sol) polarization free energy of solvation -79.239 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.935 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.352 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.591 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.287 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds