Wall clock time and date at job start Mon Mar 30 2020 05:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99790 * 2 1 4 4 C 1.52995 * 109.47038 * 1.09827 * 3 2 1 5 5 C 1.52997 * 109.47564 * 300.00126 * 4 3 2 6 6 C 1.53004 * 109.46735 * 300.00022 * 5 4 3 7 7 N 1.46900 * 109.46810 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47177 * 60.00232 * 6 5 4 9 9 C 1.52995 * 109.47180 * 241.09919 * 3 2 1 10 10 S 1.65604 * 120.00175 * 180.02562 * 2 1 3 11 11 O 1.42096 * 106.40064 * 23.53814 * 10 2 1 12 12 O 1.42098 * 106.40050 * 156.45900 * 10 2 1 13 13 C 1.76203 * 107.21578 * 270.00054 * 10 2 1 14 14 H 1.07998 * 120.00158 * 359.97438 * 13 10 2 15 15 C 1.37874 * 119.99733 * 180.02562 * 13 10 2 16 16 N 1.31514 * 120.00001 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00141 * 179.97438 * 15 13 10 18 18 H 1.48508 * 109.46992 * 89.99765 * 17 15 13 19 19 H 1.48495 * 109.47546 * 210.00020 * 17 15 13 20 20 H 1.48505 * 109.46827 * 330.00540 * 17 15 13 21 21 H 1.09000 * 109.46865 * 95.58912 * 1 2 3 22 22 H 1.09004 * 109.46745 * 215.58353 * 1 2 3 23 23 H 1.08994 * 109.47506 * 335.58422 * 1 2 3 24 24 H 1.08998 * 109.46983 * 121.09701 * 3 2 1 25 25 H 1.09005 * 109.47359 * 179.97438 * 4 3 2 26 26 H 1.09001 * 109.47343 * 60.00449 * 4 3 2 27 27 H 1.08997 * 109.47579 * 179.97438 * 5 4 3 28 28 H 1.08997 * 109.47296 * 59.99698 * 5 4 3 29 29 H 1.08994 * 109.47188 * 299.99409 * 6 5 4 30 30 H 1.00899 * 111.00255 * 179.97438 * 7 6 5 31 31 H 1.00900 * 111.00658 * 303.95473 * 7 6 5 32 32 H 1.08998 * 109.47396 * 59.99170 * 8 6 5 33 33 H 1.08998 * 109.47225 * 180.02562 * 8 6 5 34 34 H 1.08998 * 109.47578 * 179.97438 * 9 3 2 35 35 H 1.09002 * 109.47215 * 300.00581 * 9 3 2 36 36 H 0.97004 * 120.00130 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 1.2035 2.4315 0.0276 5 6 0.3032 2.3624 -1.2075 6 6 1.1620 2.4555 -2.4703 7 7 0.2976 2.3885 -3.6562 8 6 2.1559 1.2927 -2.4981 9 6 3.0562 1.3619 -1.2628 10 16 2.2931 -1.4341 -0.0006 11 8 1.4115 -2.4062 -0.5455 12 8 3.5760 -1.1565 -0.5450 13 6 2.5539 -1.8865 1.6822 14 1 2.1874 -1.2514 2.4752 15 6 3.2266 -3.0508 1.9867 16 7 3.6733 -3.8239 1.0212 17 14 3.5038 -3.5302 3.7708 18 1 2.3649 -4.3577 4.2437 19 1 4.7626 -4.3096 3.8842 20 1 3.6038 -2.3042 4.6029 21 1 -0.3633 -0.1001 -1.0228 22 1 -0.3633 -0.8358 0.5980 23 1 -0.3634 0.9357 0.4248 24 1 2.8388 1.3180 0.8800 25 1 1.7484 3.3755 0.0281 26 1 0.5917 2.3652 0.9273 27 1 -0.4053 3.1904 -1.1875 28 1 -0.2418 1.4184 -1.2075 29 1 1.7068 3.3995 -2.4703 30 1 0.8415 2.4485 -4.5040 31 1 -0.2659 1.5516 -3.6463 32 1 1.6110 0.3487 -2.4980 33 1 2.7680 1.3593 -3.3975 34 1 3.6009 2.3061 -1.2631 35 1 3.7644 0.5335 -1.2826 36 1 4.1463 -4.6433 1.2354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085869655.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:59 Heat of formation + Delta-G solvation = -106.978606 kcal Electronic energy + Delta-G solvation = -19629.217567 eV Core-core repulsion = 16659.827423 eV Total energy + Delta-G solvation = -2969.390144 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.60756 -37.45723 -36.16789 -36.10808 -35.17605 -32.87201 -31.90467 -29.06233 -28.25938 -26.20115 -23.57224 -22.27350 -21.24221 -20.48314 -18.89775 -18.11315 -17.29371 -17.05795 -16.35055 -16.17538 -16.00582 -15.44837 -15.14199 -15.06290 -14.24558 -14.01059 -13.84693 -13.60486 -13.30621 -13.15259 -13.03386 -12.96223 -12.59465 -12.44636 -12.33495 -12.31090 -12.18344 -11.79460 -11.50739 -11.27477 -11.19812 -10.98911 -10.66733 -9.66549 -9.51462 -8.75313 -7.49704 0.35401 1.31381 1.31707 1.47912 2.18845 2.55824 2.83107 3.61361 3.76299 3.85154 3.91361 4.13424 4.20803 4.28929 4.36458 4.44120 4.60551 4.63397 4.66822 4.72832 4.80082 4.92259 5.00391 5.04347 5.22647 5.25513 5.27832 5.33688 5.40801 5.53451 5.73312 5.90831 6.10929 6.26921 6.60539 6.76860 8.18810 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.037973 B = 0.006968 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.184268 B = 4017.209940 C = 4151.665780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.001 6.001 3 C 0.151 3.849 4 C -0.109 4.109 5 C -0.140 4.140 6 C 0.100 3.900 7 N -0.845 5.845 8 C -0.144 4.144 9 C -0.169 4.169 10 S 2.719 3.281 11 O -1.048 7.048 12 O -1.027 7.027 13 C -1.046 5.046 14 H 0.116 0.884 15 C 0.069 3.931 16 N -0.896 5.896 17 Si 0.988 3.012 18 H -0.254 1.254 19 H -0.262 1.262 20 H -0.247 1.247 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.114 0.886 24 H 0.065 0.935 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.344 0.656 31 H 0.339 0.661 32 H 0.031 0.969 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.578 13.070 -0.973 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.840 5.840 3 C 0.046 3.954 4 C -0.148 4.148 5 C -0.178 4.178 6 C -0.012 4.012 7 N -0.373 5.373 8 C -0.183 4.183 9 C -0.209 4.209 10 S 2.822 3.178 11 O -1.038 7.038 12 O -1.017 7.017 13 C -1.179 5.179 14 H 0.134 0.866 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.806 3.194 18 H -0.178 1.178 19 H -0.186 1.186 20 H -0.171 1.171 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.133 0.867 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.590 13.152 -1.586 14.378 hybrid contribution 0.981 -1.678 0.840 2.117 sum -4.609 11.474 -0.746 12.388 Atomic orbital electron populations 1.21899 0.78846 1.03972 1.01117 1.57377 1.14909 1.20718 1.91010 1.20948 0.93540 0.83625 0.97293 1.21731 0.97283 0.96741 0.99034 1.22221 0.98294 1.04553 0.92697 1.21415 0.92052 0.96622 0.91096 1.59048 1.27590 1.45952 1.04678 1.22282 0.98719 0.99450 0.97897 1.22515 0.99212 1.04464 0.94708 1.00006 0.71378 0.70369 0.76044 1.93283 1.68119 1.60785 1.81588 1.93209 1.43200 1.84259 1.81070 1.31067 1.50099 1.17538 1.19171 0.86618 1.26022 0.89451 0.93251 1.05616 1.69991 1.32428 1.13742 1.36566 0.85167 0.79203 0.79654 0.75406 1.17821 1.18614 1.17057 0.92695 0.93205 0.86743 0.91716 0.88591 0.89585 0.89842 0.89708 0.89511 0.84280 0.84840 0.95023 0.92279 0.89062 0.90438 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.76 8.08 127.77 1.03 3.79 16 2 N -1.00 -39.29 2.52 -516.52 -1.30 -40.60 16 3 C 0.15 4.95 3.15 44.99 0.14 5.09 16 4 C -0.11 -2.43 4.91 30.59 0.15 -2.28 16 5 C -0.14 -3.05 4.77 30.59 0.15 -2.91 16 6 C 0.10 2.31 3.25 44.92 0.15 2.45 16 7 N -0.85 -17.66 9.25 -168.68 -1.56 -19.22 16 8 C -0.14 -4.37 5.33 30.60 0.16 -4.20 16 9 C -0.17 -5.73 5.22 30.60 0.16 -5.57 16 10 S 2.72 147.05 4.87 -56.49 -0.28 146.77 16 11 O -1.05 -63.49 17.20 -128.00 -2.20 -65.69 16 12 O -1.03 -59.98 14.27 -128.00 -1.83 -61.80 16 13 C -1.05 -58.43 9.75 67.73 0.66 -57.77 16 14 H 0.12 5.86 7.81 -2.91 -0.02 5.84 16 15 C 0.07 3.90 5.46 84.65 0.46 4.36 16 16 N -0.90 -54.23 13.19 21.45 0.28 -53.95 16 17 Si 0.99 41.67 29.54 68.60 2.03 43.70 16 18 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 19 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 20 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 21 H 0.05 1.68 6.77 -2.39 -0.02 1.66 16 22 H 0.05 1.72 7.99 -2.38 -0.02 1.70 16 23 H 0.11 2.68 4.86 -2.39 -0.01 2.67 16 24 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 26 H 0.09 1.69 6.98 -2.39 -0.02 1.67 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 2.00 3.55 -2.39 -0.01 1.99 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.34 6.38 9.04 -89.69 -0.81 5.57 16 31 H 0.34 7.13 8.98 -89.69 -0.81 6.32 16 32 H 0.03 1.12 7.60 -2.39 -0.02 1.10 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.08 3.38 4.96 -2.39 -0.01 3.37 16 36 H 0.30 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -74.93 287.80 -2.30 -77.24 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -0.51 Total: 30.58 kcal Atomic # 6 Polarization: -60.09 SS G_CDS: 3.06 Total: -57.03 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -2.58 Total: -113.77 kcal Atomic # 8 Polarization: -123.47 SS G_CDS: -4.03 Total: -127.50 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 147.05 SS G_CDS: -0.28 Total: 146.77 kcal Total: -74.93 -2.30 -77.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085869655.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.741 kcal (2) G-P(sol) polarization free energy of solvation -74.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds