Wall clock time and date at job start Mon Mar 30 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46491 * 120.00321 * 2 1 4 4 C 1.53004 * 109.47066 * 274.99775 * 3 2 1 5 5 H 1.09002 * 110.33108 * 64.29836 * 4 3 2 6 6 C 1.54908 * 110.37648 * 186.55392 * 4 3 2 7 7 C 1.55422 * 101.52379 * 155.95015 * 6 4 3 8 8 C 1.54321 * 103.04810 * 324.36667 * 7 6 4 9 9 N 1.47448 * 107.23159 * 22.28093 * 8 7 6 10 10 C 1.46900 * 111.00041 * 123.26094 * 9 8 7 11 11 S 1.65603 * 119.99613 * 179.97438 * 2 1 3 12 12 O 1.42094 * 106.40298 * 23.53751 * 11 2 1 13 13 O 1.42103 * 106.40291 * 156.46473 * 11 2 1 14 14 C 1.76202 * 107.21596 * 269.99812 * 11 2 1 15 15 H 1.07998 * 120.00147 * 0.02562 * 14 11 2 16 16 C 1.37876 * 120.00020 * 179.97438 * 14 11 2 17 17 N 1.31513 * 119.99892 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 120.00222 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.46986 * 60.00164 * 18 16 14 20 20 H 1.48502 * 109.46998 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.46897 * 300.00296 * 18 16 14 22 22 H 1.08994 * 109.47205 * 89.99878 * 1 2 3 23 23 H 1.08999 * 109.47647 * 210.00621 * 1 2 3 24 24 H 1.09001 * 109.46699 * 330.00480 * 1 2 3 25 25 H 1.09008 * 109.47417 * 154.99786 * 3 2 1 26 26 H 1.09001 * 109.47284 * 34.99768 * 3 2 1 27 27 H 1.08998 * 110.98718 * 274.10608 * 6 4 3 28 28 H 1.08998 * 110.98705 * 37.91521 * 6 4 3 29 29 H 1.09004 * 110.69757 * 205.97542 * 7 6 4 30 30 H 1.09005 * 110.84788 * 82.82423 * 7 6 4 31 31 H 1.08999 * 109.88748 * 262.87827 * 8 7 6 32 32 H 1.09000 * 109.89149 * 141.68777 * 8 7 6 33 33 H 1.09002 * 109.46663 * 299.15707 * 10 9 8 34 34 H 1.08994 * 109.47054 * 59.15579 * 10 9 8 35 35 H 1.08991 * 109.47396 * 179.16235 * 10 9 8 36 36 H 0.97011 * 120.00157 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3437 1.7731 -1.4371 5 1 1.3652 2.0013 -1.8597 6 6 3.2547 3.0253 -1.4790 7 6 3.7720 2.9840 -2.9441 8 6 3.9193 1.4726 -3.2190 9 7 3.0412 0.7678 -2.2670 10 6 2.0803 -0.0902 -2.9731 11 16 2.2929 -1.4342 0.0006 12 8 1.4112 -2.4067 -0.5433 13 8 3.5759 -1.1572 -0.5438 14 6 2.5537 -1.8851 1.6839 15 1 2.1866 -1.2496 2.4763 16 6 3.2254 -3.0497 1.9895 17 7 3.6720 -3.8238 1.0247 18 14 3.5013 -3.5281 3.7741 19 1 2.1900 -3.6815 4.4538 20 1 4.2433 -4.8132 3.8330 21 1 4.2905 -2.4698 4.4539 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 3.1858 1.1176 0.4344 26 1 1.6502 2.0042 0.5894 27 1 2.6803 3.9324 -1.2910 28 1 4.0783 2.9328 -0.7711 29 1 4.7358 3.4864 -3.0266 30 1 3.0467 3.4304 -3.6243 31 1 4.9542 1.1669 -3.0651 32 1 3.6127 1.2500 -4.2410 33 1 1.4530 0.5229 -3.6202 34 1 2.6200 -0.8204 -3.5760 35 1 1.4550 -0.6095 -2.2470 36 1 4.1450 -4.6430 1.2397 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092631505.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:24 Heat of formation + Delta-G solvation = -72.781953 kcal Electronic energy + Delta-G solvation = -19596.607652 eV Core-core repulsion = 16628.700386 eV Total energy + Delta-G solvation = -2967.907266 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.91217 -35.09708 -34.95377 -33.65590 -32.93989 -31.73849 -29.79995 -26.29110 -25.95315 -25.04522 -23.25627 -20.87472 -19.70251 -18.56822 -17.22962 -16.09495 -15.68415 -15.30076 -14.92695 -14.78174 -14.04256 -13.59137 -13.30888 -13.01540 -12.91072 -12.73511 -12.30834 -11.93304 -11.82039 -11.50537 -11.18239 -11.13386 -11.10477 -10.95607 -10.85753 -10.63843 -10.54436 -10.45322 -9.99221 -9.91812 -9.73745 -9.13489 -8.72878 -8.14121 -7.58083 -6.57821 -5.19079 2.49902 3.13797 3.17832 3.24062 4.14087 4.32882 4.70730 4.74993 4.85133 4.99667 5.15453 5.47083 5.61831 5.68734 5.73749 5.76839 5.84188 5.87250 5.91271 5.97757 6.02924 6.08870 6.17560 6.27927 6.32421 6.40627 6.47348 6.52735 6.68365 6.92239 7.42730 7.49009 7.57154 7.81927 8.07843 9.00469 10.34840 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030810 B = 0.007275 C = 0.007195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.568035 B = 3848.050829 C = 3890.648574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -1.014 6.014 3 C 0.147 3.853 4 C 0.052 3.948 5 H 0.050 0.950 6 C -0.122 4.122 7 C -0.141 4.141 8 C 0.044 3.956 9 N -0.499 5.499 10 C 0.019 3.981 11 S 2.716 3.284 12 O -1.014 7.014 13 O -0.965 6.965 14 C -1.031 5.031 15 H 0.096 0.904 16 C 0.134 3.866 17 N -0.846 5.846 18 Si 0.914 3.086 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.264 1.264 22 H 0.038 0.962 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.018 0.982 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 12.229 -3.858 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.849 5.849 3 C 0.019 3.981 4 C -0.058 4.058 5 H 0.068 0.932 6 C -0.161 4.161 7 C -0.179 4.179 8 C -0.084 4.084 9 N -0.223 5.223 10 C -0.130 4.130 11 S 2.815 3.185 12 O -1.004 7.004 13 O -0.955 6.955 14 C -1.163 5.163 15 H 0.115 0.885 16 C -0.083 4.083 17 N -0.476 5.476 18 Si 0.739 3.261 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.189 1.189 22 H 0.057 0.943 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.080 11.270 -4.393 12.273 hybrid contribution -0.544 0.270 1.033 1.198 sum -2.624 11.539 -3.360 12.302 Atomic orbital electron populations 1.21231 0.80886 1.02031 1.00351 1.58049 1.13573 1.22378 1.90860 1.21089 0.97238 0.85693 0.94039 1.23120 0.95704 0.90783 0.96215 0.93217 1.22743 0.99591 0.96830 0.96954 1.22814 1.01207 0.97158 0.96727 1.22835 0.99334 0.91706 0.94513 1.63447 1.19023 1.19167 1.20647 1.22658 0.95144 0.97168 0.97997 1.00690 0.72317 0.69614 0.75862 1.93339 1.67925 1.58296 1.80873 1.93441 1.39260 1.83051 1.79790 1.30828 1.49901 1.16814 1.18786 0.88537 1.24711 0.90243 0.93454 0.99901 1.69899 1.31221 1.12760 1.33711 0.86303 0.79197 0.78246 0.82403 1.18973 1.20122 1.18902 0.94307 0.91224 0.92638 0.89388 0.91640 0.91170 0.90085 0.91022 0.92080 0.90342 0.93429 0.96350 0.91292 0.91503 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.76 10.08 59.85 0.60 2.37 16 2 N -1.01 -21.06 1.96 -121.76 -0.24 -21.29 16 3 C 0.15 2.57 5.20 -4.04 -0.02 2.55 16 4 C 0.05 0.83 2.79 -66.18 -0.18 0.65 16 5 H 0.05 0.75 7.77 -51.93 -0.40 0.34 16 6 C -0.12 -1.55 6.52 -24.44 -0.16 -1.71 16 7 C -0.14 -1.68 6.95 -24.75 -0.17 -1.85 16 8 C 0.04 0.67 6.90 -2.83 -0.02 0.65 16 9 N -0.50 -9.35 3.10 -231.59 -0.72 -10.07 16 10 C 0.02 0.36 8.25 60.06 0.50 0.86 16 11 S 2.72 73.80 3.25 -107.50 -0.35 73.45 16 12 O -1.01 -30.22 16.56 -57.17 -0.95 -31.17 16 13 O -0.97 -27.94 14.78 -57.17 -0.85 -28.79 16 14 C -1.03 -29.52 9.75 30.60 0.30 -29.22 16 15 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 16 C 0.13 3.88 5.46 -17.82 -0.10 3.78 16 17 N -0.85 -25.57 13.19 55.43 0.73 -24.84 16 18 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 22 H 0.04 0.63 7.78 -51.93 -0.40 0.22 16 23 H 0.07 1.28 7.79 -51.93 -0.40 0.87 16 24 H 0.05 0.76 7.94 -51.93 -0.41 0.35 16 25 H 0.09 1.69 7.56 -51.92 -0.39 1.30 16 26 H 0.07 0.92 7.96 -51.93 -0.41 0.50 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 1.05 8.02 -51.93 -0.42 0.64 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.05 0.66 7.58 -51.93 -0.39 0.26 16 33 H 0.02 0.29 8.09 -51.93 -0.42 -0.13 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.41 4.38 -51.93 -0.23 1.18 16 36 H 0.29 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 297.31 15.07 4.48 4.48 Total: -1.00 -35.23 297.31 -7.71 -42.94 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.55 Total: 1.08 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 0.74 Total: -21.94 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.23 Total: -56.20 kcal Atomic # 8 Polarization: -58.16 SS G_CDS: -1.79 Total: -59.95 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 73.80 SS G_CDS: -0.35 Total: 73.45 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.23 -7.71 -42.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092631505.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.845 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds