Wall clock time and date at job start Mon Mar 30 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46491 * 120.00321 * 2 1 4 4 C 1.53004 * 109.47066 * 274.99775 * 3 2 1 5 5 H 1.09002 * 110.33108 * 64.29836 * 4 3 2 6 6 C 1.54908 * 110.37648 * 186.55392 * 4 3 2 7 7 C 1.55422 * 101.52379 * 155.95015 * 6 4 3 8 8 C 1.54321 * 103.04810 * 324.36667 * 7 6 4 9 9 N 1.47448 * 107.23159 * 22.28093 * 8 7 6 10 10 C 1.46900 * 111.00041 * 123.26094 * 9 8 7 11 11 S 1.65603 * 119.99613 * 179.97438 * 2 1 3 12 12 O 1.42094 * 106.40298 * 23.53751 * 11 2 1 13 13 O 1.42103 * 106.40291 * 156.46473 * 11 2 1 14 14 C 1.76202 * 107.21596 * 269.99812 * 11 2 1 15 15 H 1.07998 * 120.00147 * 0.02562 * 14 11 2 16 16 C 1.37876 * 120.00020 * 179.97438 * 14 11 2 17 17 N 1.31513 * 119.99892 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 120.00222 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.46986 * 60.00164 * 18 16 14 20 20 H 1.48502 * 109.46998 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.46897 * 300.00296 * 18 16 14 22 22 H 1.08994 * 109.47205 * 89.99878 * 1 2 3 23 23 H 1.08999 * 109.47647 * 210.00621 * 1 2 3 24 24 H 1.09001 * 109.46699 * 330.00480 * 1 2 3 25 25 H 1.09008 * 109.47417 * 154.99786 * 3 2 1 26 26 H 1.09001 * 109.47284 * 34.99768 * 3 2 1 27 27 H 1.08998 * 110.98718 * 274.10608 * 6 4 3 28 28 H 1.08998 * 110.98705 * 37.91521 * 6 4 3 29 29 H 1.09004 * 110.69757 * 205.97542 * 7 6 4 30 30 H 1.09005 * 110.84788 * 82.82423 * 7 6 4 31 31 H 1.08999 * 109.88748 * 262.87827 * 8 7 6 32 32 H 1.09000 * 109.89149 * 141.68777 * 8 7 6 33 33 H 1.09002 * 109.46663 * 299.15707 * 10 9 8 34 34 H 1.08994 * 109.47054 * 59.15579 * 10 9 8 35 35 H 1.08991 * 109.47396 * 179.16235 * 10 9 8 36 36 H 0.97011 * 120.00157 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3437 1.7731 -1.4371 5 1 1.3652 2.0013 -1.8597 6 6 3.2547 3.0253 -1.4790 7 6 3.7720 2.9840 -2.9441 8 6 3.9193 1.4726 -3.2190 9 7 3.0412 0.7678 -2.2670 10 6 2.0803 -0.0902 -2.9731 11 16 2.2929 -1.4342 0.0006 12 8 1.4112 -2.4067 -0.5433 13 8 3.5759 -1.1572 -0.5438 14 6 2.5537 -1.8851 1.6839 15 1 2.1866 -1.2496 2.4763 16 6 3.2254 -3.0497 1.9895 17 7 3.6720 -3.8238 1.0247 18 14 3.5013 -3.5281 3.7741 19 1 2.1900 -3.6815 4.4538 20 1 4.2433 -4.8132 3.8330 21 1 4.2905 -2.4698 4.4539 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 3.1858 1.1176 0.4344 26 1 1.6502 2.0042 0.5894 27 1 2.6803 3.9324 -1.2910 28 1 4.0783 2.9328 -0.7711 29 1 4.7358 3.4864 -3.0266 30 1 3.0467 3.4304 -3.6243 31 1 4.9542 1.1669 -3.0651 32 1 3.6127 1.2500 -4.2410 33 1 1.4530 0.5229 -3.6202 34 1 2.6200 -0.8204 -3.5760 35 1 1.4550 -0.6095 -2.2470 36 1 4.1450 -4.6430 1.2397 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092631505.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:24 Heat of formation + Delta-G solvation = -99.619897 kcal Electronic energy + Delta-G solvation = -19597.771433 eV Core-core repulsion = 16628.700386 eV Total energy + Delta-G solvation = -2969.071047 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.14275 -37.16943 -36.57543 -35.84619 -35.10064 -32.95868 -31.06048 -28.21819 -27.54204 -26.40551 -24.71291 -21.92991 -21.01607 -20.63771 -18.98410 -18.13139 -17.04034 -16.98192 -16.58140 -16.40527 -15.75103 -15.04508 -14.80988 -14.70593 -14.27229 -14.17738 -13.80560 -13.59645 -13.37844 -13.12613 -12.99214 -12.90839 -12.38037 -12.35744 -12.31847 -12.17251 -12.07116 -11.96127 -11.79633 -11.63266 -11.47616 -11.21924 -10.82042 -9.74910 -8.91338 -8.69049 -7.43799 0.51337 1.31530 1.33984 1.46604 2.21913 2.60337 2.95000 3.17576 3.78278 3.83819 3.96457 4.12661 4.22528 4.30817 4.38147 4.41516 4.46928 4.50029 4.71466 4.72758 4.83121 4.91356 4.92560 4.96106 5.00930 5.02907 5.10614 5.18964 5.25858 5.39269 5.47045 5.92078 6.11884 6.27105 6.32845 6.81643 8.23707 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030810 B = 0.007275 C = 0.007195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.568035 B = 3848.050829 C = 3890.648574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -1.010 6.010 3 C 0.137 3.863 4 C 0.048 3.952 5 H 0.066 0.934 6 C -0.116 4.116 7 C -0.128 4.128 8 C 0.037 3.963 9 N -0.540 5.540 10 C 0.021 3.979 11 S 2.724 3.276 12 O -1.054 7.054 13 O -0.997 6.997 14 C -1.060 5.060 15 H 0.110 0.890 16 C 0.070 3.930 17 N -0.894 5.894 18 Si 0.983 3.017 19 H -0.251 1.251 20 H -0.262 1.262 21 H -0.249 1.249 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.039 0.961 36 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.442 14.769 -2.778 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.848 5.848 3 C 0.011 3.989 4 C -0.061 4.061 5 H 0.084 0.916 6 C -0.154 4.154 7 C -0.167 4.167 8 C -0.090 4.090 9 N -0.264 5.264 10 C -0.128 4.128 11 S 2.824 3.176 12 O -1.044 7.044 13 O -0.987 6.987 14 C -1.191 5.191 15 H 0.128 0.872 16 C -0.143 4.143 17 N -0.526 5.526 18 Si 0.801 3.199 19 H -0.174 1.174 20 H -0.186 1.186 21 H -0.173 1.173 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.120 0.880 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.123 0.877 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.818 13.822 -3.327 14.493 hybrid contribution -0.351 -0.463 0.644 0.867 sum -3.169 13.359 -2.683 13.990 Atomic orbital electron populations 1.21489 0.78638 1.03438 1.01565 1.57488 1.14937 1.21587 1.90814 1.21444 0.96334 0.84946 0.96168 1.23203 0.97079 0.91380 0.94473 0.91600 1.22763 0.99047 0.96460 0.97159 1.22775 1.02785 0.94483 0.96623 1.22874 0.97644 0.94092 0.94424 1.63320 1.19901 1.21031 1.22169 1.22553 0.95224 0.97491 0.97523 1.00063 0.71796 0.70415 0.75339 1.93270 1.68640 1.61028 1.81472 1.93385 1.41167 1.83925 1.80182 1.31290 1.50112 1.17589 1.20154 0.87176 1.25993 0.89534 0.93265 1.05481 1.70000 1.32393 1.13668 1.36528 0.85279 0.80091 0.78848 0.75708 1.17426 1.18553 1.17312 0.93287 0.93016 0.87954 0.91910 0.87201 0.87675 0.90997 0.89292 0.90033 0.92294 0.92490 0.93283 0.92974 0.94265 0.89322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.12 10.08 127.77 1.29 4.41 16 2 N -1.01 -41.42 1.96 -539.14 -1.06 -42.48 16 3 C 0.14 4.58 5.20 86.38 0.45 5.02 16 4 C 0.05 1.44 2.79 45.39 0.13 1.56 16 5 H 0.07 1.75 7.77 -2.39 -0.02 1.73 16 6 C -0.12 -2.54 6.52 32.08 0.21 -2.33 16 7 C -0.13 -2.67 6.95 31.88 0.22 -2.44 16 8 C 0.04 1.10 6.90 86.65 0.60 1.70 16 9 N -0.54 -20.10 3.10 -886.63 -2.75 -22.84 16 10 C 0.02 0.80 8.25 127.69 1.05 1.86 16 11 S 2.72 152.47 3.25 -56.49 -0.18 152.29 16 12 O -1.05 -65.54 16.56 -128.00 -2.12 -67.66 16 13 O -1.00 -60.17 14.78 -128.00 -1.89 -62.07 16 14 C -1.06 -61.63 9.75 67.73 0.66 -60.97 16 15 H 0.11 5.83 7.81 -2.91 -0.02 5.81 16 16 C 0.07 4.06 5.46 84.65 0.46 4.52 16 17 N -0.89 -55.68 13.19 21.45 0.28 -55.40 16 18 Si 0.98 42.92 29.54 68.60 2.03 44.95 16 19 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 21 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 22 H 0.05 1.52 7.78 -2.39 -0.02 1.50 16 23 H 0.05 1.89 7.79 -2.39 -0.02 1.87 16 24 H 0.10 2.42 7.94 -2.39 -0.02 2.40 16 25 H 0.06 2.40 7.56 -2.38 -0.02 2.39 16 26 H 0.11 2.66 7.96 -2.39 -0.02 2.64 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 1.71 8.02 -2.39 -0.02 1.69 16 29 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.06 1.53 7.58 -2.39 -0.02 1.51 16 33 H 0.05 1.50 8.09 -2.39 -0.02 1.48 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.69 4.38 -2.39 -0.01 1.68 16 36 H 0.30 16.64 8.31 -92.70 -0.77 15.87 16 Total: -1.00 -80.31 297.31 0.43 -79.89 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.05 Total: 19.99 kcal Atomic # 6 Polarization: -51.75 SS G_CDS: 5.07 Total: -46.68 kcal Atomic # 7 Polarization: -117.19 SS G_CDS: -3.52 Total: -120.72 kcal Atomic # 8 Polarization: -125.71 SS G_CDS: -4.01 Total: -129.72 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 152.47 SS G_CDS: -0.18 Total: 152.29 kcal Total: -80.31 0.43 -79.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092631505.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.734 kcal (2) G-P(sol) polarization free energy of solvation -80.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds