Wall clock time and date at job start Mon Mar 30 2020 05:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47211 * 2 1 4 4 O 1.42899 * 109.47059 * 119.99989 * 2 1 3 5 5 C 1.50706 * 109.47049 * 239.99651 * 2 1 3 6 6 C 1.38259 * 119.93969 * 264.98064 * 5 2 1 7 7 C 1.38064 * 120.14076 * 180.02562 * 6 5 2 8 8 C 1.39134 * 120.02217 * 359.97438 * 7 6 5 9 9 N 1.39303 * 120.05941 * 180.02562 * 8 7 6 10 10 C 1.36857 * 119.99978 * 359.97438 * 9 8 7 11 11 H 1.08000 * 119.99626 * 323.96697 * 10 9 8 12 12 C 1.38787 * 119.99677 * 143.96522 * 10 9 8 13 13 N 1.31599 * 119.99437 * 154.52516 * 12 10 9 14 14 Si 1.86793 * 120.00409 * 334.52801 * 12 10 9 15 15 H 1.48499 * 109.47387 * 94.55699 * 14 12 10 16 16 H 1.48500 * 109.47404 * 214.56055 * 14 12 10 17 17 H 1.48504 * 109.47217 * 334.55577 * 14 12 10 18 18 C 1.46491 * 119.99887 * 179.97438 * 9 8 7 19 19 C 1.47208 * 109.47062 * 88.75378 * 18 9 8 20 20 N 7.51129 * 125.92499 * 261.68507 * 2 1 3 21 21 C 1.38957 * 119.87865 * 359.97438 * 8 7 6 22 22 C 1.38565 * 119.85993 * 0.02562 * 21 8 7 23 23 O 1.35895 * 120.01526 * 179.72352 * 22 21 8 24 24 H 1.09002 * 109.46891 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47063 * 300.00231 * 1 2 3 26 26 H 1.08998 * 109.47253 * 60.00148 * 1 2 3 27 27 H 0.96708 * 114.00079 * 60.00281 * 4 2 1 28 28 H 1.08000 * 119.92808 * 0.04336 * 6 5 2 29 29 H 1.08001 * 119.98420 * 179.97438 * 7 6 5 30 30 H 0.97003 * 119.99820 * 179.97438 * 13 12 10 31 31 H 1.08998 * 109.47208 * 208.75067 * 18 9 8 32 32 H 1.08998 * 109.47363 * 328.75578 * 18 9 8 33 33 H 1.08000 * 120.07746 * 180.02562 * 21 8 7 34 34 H 0.96710 * 113.99981 * 90.00106 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0324 -0.7105 -1.2305 6 6 2.3612 -2.0519 -1.1668 7 6 2.8223 -2.7068 -2.2914 8 6 2.9566 -2.0174 -3.4924 9 7 3.4212 -2.6775 -4.6277 10 6 3.7466 -4.0052 -4.5622 11 1 4.2042 -4.4056 -3.6696 12 6 3.4884 -4.8371 -5.6427 13 7 4.2028 -5.9283 -5.8184 14 14 2.1272 -4.4079 -6.8476 15 1 2.7007 -3.6648 -7.9984 16 1 1.4853 -5.6554 -7.3343 17 1 1.1131 -3.5621 -6.1682 18 6 3.5616 -1.9505 -5.8917 19 6 4.9018 -1.3458 -5.9638 20 7 5.9371 -0.8796 -6.0186 21 6 2.6253 -0.6695 -3.5577 22 6 2.1630 -0.0171 -2.4260 23 8 1.8435 1.3024 -2.4848 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7210 -1.5953 1.2329 28 1 2.2569 -2.5887 -0.2354 29 1 3.0788 -3.7546 -2.2387 30 1 4.0222 -6.5099 -6.5734 31 1 3.4293 -2.6410 -6.7246 32 1 2.8060 -1.1668 -5.9460 33 1 2.7279 -0.1313 -4.4884 34 1 0.9210 1.4737 -2.7194 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093672079.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:38 Heat of formation + Delta-G solvation = -19.227006 kcal Electronic energy + Delta-G solvation = -19442.634751 eV Core-core repulsion = 16341.605850 eV Total energy + Delta-G solvation = -3101.028901 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.75889 -37.91609 -36.90944 -35.84581 -34.70549 -32.45260 -31.08770 -29.60204 -28.83075 -27.19407 -24.64837 -22.52416 -21.89203 -20.28110 -18.47179 -18.19279 -16.99708 -16.50169 -15.98759 -15.81276 -15.18862 -14.65874 -14.27655 -14.11779 -13.81191 -13.41002 -13.18247 -12.89122 -12.78169 -12.53718 -12.21342 -11.91457 -11.88008 -11.80335 -11.54694 -11.27194 -10.94402 -10.73811 -10.53911 -10.28225 -10.10709 -9.75246 -9.50008 -8.81913 -8.15496 -6.91449 -6.69250 -4.14395 1.94122 2.06914 2.83349 3.03010 3.08631 3.11731 3.29130 3.90337 4.14632 4.31795 4.50676 4.59195 4.67829 4.91370 5.08058 5.32925 5.35762 5.40570 5.54195 5.67101 5.82068 5.89770 5.98910 6.12929 6.24917 6.39620 6.45076 6.93185 6.97502 7.12978 7.31611 7.43986 7.79808 7.84514 8.04038 8.06667 8.29337 8.92743 9.15415 10.40983 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.006322 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.895120 B = 4427.715320 C = 4873.484586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.161 3.839 3 H 0.100 0.900 4 O -0.564 6.564 5 C -0.240 4.240 6 C -0.052 4.052 7 C -0.188 4.188 8 C 0.232 3.768 9 N -0.463 5.463 10 C -0.329 4.329 11 H 0.107 0.893 12 C 0.062 3.938 13 N -0.847 5.847 14 Si 0.861 3.139 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.253 1.253 18 C 0.191 3.809 19 C 0.206 3.794 20 N -0.443 5.443 21 C -0.254 4.254 22 C 0.157 3.843 23 O -0.503 6.503 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.370 0.630 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.278 0.722 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.400 7.131 4.427 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.102 3.898 3 H 0.118 0.882 4 O -0.370 6.370 5 C -0.244 4.244 6 C -0.071 4.071 7 C -0.211 4.211 8 C 0.122 3.878 9 N -0.156 5.156 10 C -0.455 4.455 11 H 0.125 0.875 12 C -0.146 4.146 13 N -0.480 5.480 14 Si 0.687 3.313 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.177 1.177 18 C 0.063 3.937 19 C -0.114 4.114 20 N -0.122 5.122 21 C -0.278 4.278 22 C 0.112 3.888 23 O -0.312 6.312 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.218 0.782 28 H 0.131 0.869 29 H 0.149 0.851 30 H 0.089 0.911 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.851 8.117 4.275 12.075 hybrid contribution -1.711 -0.807 -1.158 2.218 sum -9.562 7.310 3.117 12.433 Atomic orbital electron populations 1.22453 0.96749 1.02297 1.01798 1.20409 0.91800 0.95764 0.81840 0.88191 1.86572 1.77566 1.28925 1.43919 1.20140 1.13230 0.95227 0.95787 1.20335 0.96756 0.92777 0.97237 1.20682 1.08227 1.01034 0.91120 1.17849 0.91129 0.90536 0.88304 1.42316 1.60243 1.08244 1.04776 1.18956 1.40141 0.81115 1.05301 0.87517 1.25390 0.96393 0.95367 0.97495 1.69874 1.34705 1.14100 1.29310 0.87180 0.84015 0.79141 0.80974 1.19773 1.20637 1.17660 1.19414 0.86282 0.96617 0.91361 1.30179 0.95750 0.92530 0.92908 1.81066 1.11903 1.10761 1.08431 1.20669 1.14279 0.94143 0.98694 1.17706 0.97640 0.81729 0.91707 1.84774 1.32518 1.21517 1.92381 0.92374 0.92377 0.92059 0.78177 0.86928 0.85056 0.91127 0.87277 0.87347 0.86562 0.76484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.52 37.16 0.35 -1.52 16 2 C 0.16 2.18 3.55 -27.88 -0.10 2.08 16 3 H 0.10 1.44 7.68 -51.93 -0.40 1.04 16 4 O -0.56 -7.79 12.99 -35.23 -0.46 -8.25 16 5 C -0.24 -3.80 5.09 -104.40 -0.53 -4.33 16 6 C -0.05 -0.84 9.29 -39.64 -0.37 -1.21 16 7 C -0.19 -3.56 9.26 -39.31 -0.36 -3.93 16 8 C 0.23 4.61 6.51 -83.87 -0.55 4.06 16 9 N -0.46 -9.80 2.26 -116.27 -0.26 -10.06 16 10 C -0.33 -7.92 8.95 -15.11 -0.14 -8.05 16 11 H 0.11 2.79 6.92 -52.49 -0.36 2.43 16 12 C 0.06 1.50 5.24 -17.45 -0.09 1.41 16 13 N -0.85 -22.08 13.97 55.49 0.77 -21.31 16 14 Si 0.86 17.57 25.24 -169.99 -4.29 13.28 16 15 H -0.27 -5.16 6.59 56.52 0.37 -4.79 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.25 -4.99 7.11 56.52 0.40 -4.58 16 18 C 0.19 3.54 4.40 -6.83 -0.03 3.51 16 19 C 0.21 4.16 15.77 -20.73 -0.33 3.83 16 20 N -0.44 -9.67 18.54 42.18 0.78 -8.88 16 21 C -0.25 -4.54 9.14 -39.19 -0.36 -4.90 16 22 C 0.16 2.59 6.67 -39.25 -0.26 2.32 16 23 O -0.50 -7.06 12.63 -19.41 -0.25 -7.31 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.37 3.89 7.32 45.56 0.33 4.22 16 28 H 0.11 1.50 6.39 -52.49 -0.34 1.17 16 29 H 0.13 2.58 6.41 -52.49 -0.34 2.25 16 30 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.11 2.06 3.34 -51.93 -0.17 1.89 16 32 H 0.11 1.62 6.26 -51.93 -0.32 1.29 16 33 H 0.12 1.92 6.16 -52.49 -0.32 1.60 16 34 H 0.38 3.45 9.06 45.56 0.41 3.86 16 LS Contribution 292.11 15.07 4.40 4.40 Total: -1.00 -29.02 292.11 -4.00 -33.02 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -1.94 Total: 11.82 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.76 Total: -6.72 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 1.29 Total: -40.25 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.70 Total: -15.56 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -4.29 Total: 13.28 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.02 -4.00 -33.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093672079.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.791 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds