Wall clock time and date at job start Mon Mar 30 2020 05:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47211 * 2 1 4 4 O 1.42899 * 109.47059 * 119.99989 * 2 1 3 5 5 C 1.50706 * 109.47049 * 239.99651 * 2 1 3 6 6 C 1.38259 * 119.93969 * 264.98064 * 5 2 1 7 7 C 1.38064 * 120.14076 * 180.02562 * 6 5 2 8 8 C 1.39134 * 120.02217 * 359.97438 * 7 6 5 9 9 N 1.39303 * 120.05941 * 180.02562 * 8 7 6 10 10 C 1.36857 * 119.99978 * 359.97438 * 9 8 7 11 11 H 1.08000 * 119.99626 * 323.96697 * 10 9 8 12 12 C 1.38787 * 119.99677 * 143.96522 * 10 9 8 13 13 N 1.31599 * 119.99437 * 154.52516 * 12 10 9 14 14 Si 1.86793 * 120.00409 * 334.52801 * 12 10 9 15 15 H 1.48499 * 109.47387 * 94.55699 * 14 12 10 16 16 H 1.48500 * 109.47404 * 214.56055 * 14 12 10 17 17 H 1.48504 * 109.47217 * 334.55577 * 14 12 10 18 18 C 1.46491 * 119.99887 * 179.97438 * 9 8 7 19 19 C 1.47208 * 109.47062 * 88.75378 * 18 9 8 20 20 N 7.51129 * 125.92499 * 261.68507 * 2 1 3 21 21 C 1.38957 * 119.87865 * 359.97438 * 8 7 6 22 22 C 1.38565 * 119.85993 * 0.02562 * 21 8 7 23 23 O 1.35895 * 120.01526 * 179.72352 * 22 21 8 24 24 H 1.09002 * 109.46891 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47063 * 300.00231 * 1 2 3 26 26 H 1.08998 * 109.47253 * 60.00148 * 1 2 3 27 27 H 0.96708 * 114.00079 * 60.00281 * 4 2 1 28 28 H 1.08000 * 119.92808 * 0.04336 * 6 5 2 29 29 H 1.08001 * 119.98420 * 179.97438 * 7 6 5 30 30 H 0.97003 * 119.99820 * 179.97438 * 13 12 10 31 31 H 1.08998 * 109.47208 * 208.75067 * 18 9 8 32 32 H 1.08998 * 109.47363 * 328.75578 * 18 9 8 33 33 H 1.08000 * 120.07746 * 180.02562 * 21 8 7 34 34 H 0.96710 * 113.99981 * 90.00106 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0324 -0.7105 -1.2305 6 6 2.3612 -2.0519 -1.1668 7 6 2.8223 -2.7068 -2.2914 8 6 2.9566 -2.0174 -3.4924 9 7 3.4212 -2.6775 -4.6277 10 6 3.7466 -4.0052 -4.5622 11 1 4.2042 -4.4056 -3.6696 12 6 3.4884 -4.8371 -5.6427 13 7 4.2028 -5.9283 -5.8184 14 14 2.1272 -4.4079 -6.8476 15 1 2.7007 -3.6648 -7.9984 16 1 1.4853 -5.6554 -7.3343 17 1 1.1131 -3.5621 -6.1682 18 6 3.5616 -1.9505 -5.8917 19 6 4.9018 -1.3458 -5.9638 20 7 5.9371 -0.8796 -6.0186 21 6 2.6253 -0.6695 -3.5577 22 6 2.1630 -0.0171 -2.4260 23 8 1.8435 1.3024 -2.4848 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.7210 -1.5953 1.2329 28 1 2.2569 -2.5887 -0.2354 29 1 3.0788 -3.7546 -2.2387 30 1 4.0222 -6.5099 -6.5734 31 1 3.4293 -2.6410 -6.7246 32 1 2.8060 -1.1668 -5.9460 33 1 2.7279 -0.1313 -4.4884 34 1 0.9210 1.4737 -2.7194 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093672079.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:37 Heat of formation + Delta-G solvation = -41.067103 kcal Electronic energy + Delta-G solvation = -19443.581809 eV Core-core repulsion = 16341.605850 eV Total energy + Delta-G solvation = -3101.975958 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.09592 -39.31421 -38.02107 -37.37553 -36.16261 -34.16677 -32.23584 -31.01349 -30.12738 -28.65223 -26.15582 -23.77470 -23.25448 -21.59634 -20.11212 -19.53238 -18.35391 -17.84800 -17.44208 -17.21010 -16.52467 -15.92013 -15.53873 -15.45712 -15.24096 -14.91481 -14.53622 -14.44748 -14.19240 -13.84015 -13.64986 -13.35070 -13.29002 -13.01327 -12.78669 -12.71320 -12.33666 -12.15095 -11.80822 -11.73464 -11.47888 -11.11780 -10.83104 -10.46921 -9.51364 -8.49628 -8.43573 -5.97504 0.58152 0.69417 1.24759 1.39662 1.52023 1.53453 1.71354 2.22088 2.69210 2.84931 2.90388 3.24606 3.48891 3.66014 3.92300 4.04390 4.13292 4.25209 4.37617 4.45482 4.59033 4.75450 4.92698 4.96211 5.08407 5.18753 5.33337 5.47982 5.57088 5.78778 5.82097 5.93027 6.15088 6.45495 6.60735 6.88317 7.00922 7.19510 7.43858 8.65406 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022854 B = 0.006322 C = 0.005744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.895120 B = 4427.715320 C = 4873.484586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.162 3.838 3 H 0.095 0.905 4 O -0.578 6.578 5 C -0.230 4.230 6 C -0.050 4.050 7 C -0.211 4.211 8 C 0.214 3.786 9 N -0.482 5.482 10 C -0.327 4.327 11 H 0.064 0.936 12 C 0.013 3.987 13 N -0.905 5.905 14 Si 0.922 3.078 15 H -0.245 1.245 16 H -0.289 1.289 17 H -0.237 1.237 18 C 0.190 3.810 19 C 0.219 3.781 20 N -0.479 5.479 21 C -0.255 4.255 22 C 0.161 3.839 23 O -0.503 6.503 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.384 0.616 28 H 0.140 0.860 29 H 0.110 0.890 30 H 0.279 0.721 31 H 0.110 0.890 32 H 0.153 0.847 33 H 0.132 0.868 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.928 9.685 4.761 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.104 3.896 3 H 0.113 0.887 4 O -0.386 6.386 5 C -0.233 4.233 6 C -0.069 4.069 7 C -0.234 4.234 8 C 0.107 3.893 9 N -0.178 5.178 10 C -0.455 4.455 11 H 0.082 0.918 12 C -0.190 4.190 13 N -0.541 5.541 14 Si 0.744 3.256 15 H -0.170 1.170 16 H -0.216 1.216 17 H -0.159 1.159 18 C 0.063 3.937 19 C -0.100 4.100 20 N -0.158 5.158 21 C -0.279 4.279 22 C 0.116 3.884 23 O -0.316 6.316 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.234 0.766 28 H 0.157 0.843 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.127 0.873 32 H 0.170 0.830 33 H 0.150 0.850 34 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -10.418 10.723 4.649 15.657 hybrid contribution -0.957 -1.443 -0.976 1.988 sum -11.375 9.280 3.672 15.133 Atomic orbital electron populations 1.22382 0.94130 1.03002 1.03120 1.20449 0.93712 0.94975 0.80508 0.88719 1.86549 1.78040 1.30184 1.43813 1.20554 1.11121 0.94920 0.96733 1.20614 0.95528 0.93324 0.97395 1.20738 1.09704 1.00541 0.92372 1.18107 0.91816 0.91451 0.87956 1.42181 1.62309 1.07264 1.06062 1.18636 1.39723 0.83059 1.04046 0.91840 1.26086 0.98181 0.95094 0.99642 1.69987 1.37007 1.16123 1.30955 0.86208 0.80953 0.78972 0.79426 1.17038 1.21609 1.15923 1.19719 0.86316 0.97470 0.90152 1.30644 0.95917 0.91637 0.91823 1.81066 1.12902 1.12243 1.09571 1.20872 1.13738 0.93246 1.00064 1.17768 0.96735 0.82570 0.91339 1.84719 1.34863 1.19657 1.92356 0.92005 0.91159 0.90719 0.76567 0.84272 0.87192 0.91143 0.87313 0.82999 0.85008 0.73454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.52 71.98 0.69 -2.22 16 2 C 0.16 3.83 3.55 29.85 0.11 3.94 16 3 H 0.09 2.38 7.68 -2.39 -0.02 2.37 16 4 O -0.58 -14.22 12.99 -148.98 -1.93 -16.15 16 5 C -0.23 -6.58 5.09 -19.72 -0.10 -6.68 16 6 C -0.05 -1.54 9.29 22.23 0.21 -1.33 16 7 C -0.21 -8.04 9.26 22.44 0.21 -7.83 16 8 C 0.21 8.33 6.51 38.34 0.25 8.58 16 9 N -0.48 -20.33 2.26 -521.78 -1.18 -21.51 16 10 C -0.33 -16.41 8.95 84.04 0.75 -15.66 16 11 H 0.06 3.61 6.92 -2.91 -0.02 3.59 16 12 C 0.01 0.66 5.24 84.86 0.45 1.10 16 13 N -0.90 -49.45 13.97 21.65 0.30 -49.15 16 14 Si 0.92 35.81 25.24 68.60 1.73 37.55 16 15 H -0.24 -8.44 6.59 99.48 0.66 -7.78 16 16 H -0.29 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.24 -8.47 7.11 99.48 0.71 -7.77 16 18 C 0.19 6.73 4.40 84.58 0.37 7.10 16 19 C 0.22 8.65 15.77 89.44 1.41 10.06 16 20 N -0.48 -20.74 18.54 20.02 0.37 -20.37 16 21 C -0.26 -8.47 9.14 22.52 0.21 -8.27 16 22 C 0.16 4.77 6.67 22.49 0.15 4.92 16 23 O -0.50 -11.99 12.63 -92.37 -1.17 -13.15 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.38 6.89 7.32 -74.05 -0.54 6.35 16 28 H 0.14 3.43 6.39 -2.91 -0.02 3.41 16 29 H 0.11 4.61 6.41 -2.91 -0.02 4.59 16 30 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.11 3.87 3.34 -2.39 -0.01 3.86 16 32 H 0.15 3.97 6.26 -2.39 -0.01 3.95 16 33 H 0.13 3.89 6.16 -2.91 -0.02 3.87 16 34 H 0.41 5.33 9.06 -74.05 -0.67 4.66 16 Total: -1.00 -65.03 292.11 2.73 -62.31 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.09 Total: 26.77 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 4.69 Total: -6.29 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -0.51 Total: -91.03 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -3.10 Total: -29.31 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 1.73 Total: 37.55 kcal Total: -65.03 2.73 -62.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093672079.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.240 kcal (2) G-P(sol) polarization free energy of solvation -65.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds