Wall clock time and date at job start Mon Mar 30 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 110.99805 * 2 1 4 4 C 1.46900 * 110.99518 * 123.95034 * 2 1 3 5 5 C 1.53005 * 112.84669 * 167.24312 * 4 2 1 6 6 N 1.46500 * 109.47178 * 310.26916 * 5 4 2 7 7 S 1.65599 * 120.00165 * 163.70388 * 6 5 4 8 8 O 1.42104 * 106.40128 * 178.54429 * 7 6 5 9 9 O 1.42104 * 106.40292 * 311.46126 * 7 6 5 10 10 C 1.76205 * 107.21653 * 65.00357 * 7 6 5 11 11 H 1.07996 * 119.99842 * 0.02562 * 10 7 6 12 12 C 1.37872 * 119.99652 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00350 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99711 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46975 * 60.00295 * 14 12 10 16 16 H 1.48501 * 109.47376 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47349 * 300.00544 * 14 12 10 18 18 C 1.53781 * 113.62016 * 298.43575 * 4 2 1 19 19 C 1.53778 * 87.17134 * 139.94119 * 18 4 2 20 20 C 1.53778 * 113.61524 * 35.93803 * 4 2 1 21 21 H 1.09000 * 109.47537 * 288.81671 * 1 2 3 22 22 H 1.08999 * 109.47533 * 48.81680 * 1 2 3 23 23 H 1.09000 * 109.47052 * 168.81590 * 1 2 3 24 24 H 1.09007 * 109.47079 * 179.03793 * 3 2 1 25 25 H 1.09000 * 109.47379 * 299.04094 * 3 2 1 26 26 H 1.09003 * 109.47535 * 59.04314 * 3 2 1 27 27 H 1.08999 * 109.47037 * 70.27076 * 5 4 2 28 28 H 1.09000 * 109.47037 * 190.27296 * 5 4 2 29 29 H 0.97003 * 119.99639 * 343.71328 * 6 5 4 30 30 H 0.96998 * 120.00022 * 179.97438 * 13 12 10 31 31 H 1.09000 * 113.61658 * 254.53954 * 18 4 2 32 32 H 1.08998 * 113.61001 * 25.35226 * 18 4 2 33 33 H 1.08997 * 113.61108 * 89.16588 * 19 18 4 34 34 H 1.09001 * 113.61241 * 220.06300 * 19 18 4 35 35 H 1.08995 * 113.61528 * 334.56440 * 20 4 2 36 36 H 1.09000 * 113.61473 * 105.38836 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1377 5 6 3.4920 -1.0588 1.0151 6 7 3.7734 -1.6183 -0.3092 7 16 5.3279 -1.6572 -0.8785 8 8 5.2725 -2.2805 -2.1544 9 8 5.8639 -0.3576 -0.6711 10 6 6.2392 -2.7441 0.1670 11 1 5.7490 -3.2332 0.9958 12 6 7.5777 -2.9708 -0.0736 13 7 8.1744 -2.3755 -1.0831 14 14 8.5439 -4.1224 1.0353 15 1 7.9370 -5.4770 0.9912 16 1 9.9515 -4.1947 0.5676 17 1 8.5115 -3.6107 2.4290 18 6 1.5897 -0.1937 2.5062 19 6 1.3935 -1.6466 2.9703 20 6 1.1509 -2.0014 1.4920 21 1 -0.3634 0.3315 0.9727 22 1 -0.3634 0.6767 -0.7734 23 1 -0.3633 -1.0081 -0.1993 24 1 3.0849 1.3424 0.0173 25 1 1.6598 1.8894 -0.8984 26 1 1.6321 1.9001 0.8813 27 1 4.0550 -0.1347 1.1462 28 1 3.7861 -1.7753 1.7821 29 1 3.0489 -1.9659 -0.8527 30 1 9.1162 -2.5348 -1.2521 31 1 2.3996 0.3236 3.0206 32 1 0.6664 0.3851 2.4811 33 1 2.2947 -2.0977 3.3855 34 1 0.5177 -1.7881 3.6036 35 1 0.1070 -1.9180 1.1899 36 1 1.6061 -2.9435 1.1865 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097932790.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:07 Heat of formation + Delta-G solvation = -61.636663 kcal Electronic energy + Delta-G solvation = -19052.349726 eV Core-core repulsion = 16084.925756 eV Total energy + Delta-G solvation = -2967.423970 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.24461 -35.08608 -34.67732 -33.82757 -33.65871 -32.96975 -28.00034 -26.63087 -26.06143 -25.39091 -23.85295 -22.01938 -18.93196 -17.99619 -17.24162 -16.71664 -16.06547 -15.50276 -14.77563 -14.64519 -14.40253 -14.28342 -13.92540 -13.30158 -13.01777 -12.85072 -12.39969 -12.15649 -11.93833 -11.73595 -11.44640 -11.28803 -11.19603 -11.16461 -10.82137 -10.63716 -10.58664 -10.23193 -10.16260 -10.07155 -9.96595 -9.18435 -8.88604 -8.31557 -8.07662 -6.63632 -5.25108 2.47578 3.11500 3.15979 3.21785 3.98173 4.12162 4.55399 4.61983 4.69906 4.77754 4.83793 5.05849 5.26606 5.31839 5.53673 5.60248 5.62838 5.68443 5.79439 5.84076 5.90016 5.94139 5.99750 6.05662 6.12061 6.21957 6.25220 6.37814 6.64905 7.00754 7.20080 7.22750 7.38860 8.01574 8.18137 8.95188 10.30287 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028355 B = 0.006702 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.245274 B = 4176.807890 C = 4714.428204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.525 5.525 3 C 0.022 3.978 4 C 0.086 3.914 5 C 0.160 3.840 6 N -1.124 6.124 7 S 2.720 3.280 8 O -1.009 7.009 9 O -1.010 7.010 10 C -1.023 5.023 11 H 0.100 0.900 12 C 0.133 3.867 13 N -0.846 5.846 14 Si 0.918 3.082 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.265 1.265 18 C -0.169 4.169 19 C -0.138 4.138 20 C -0.140 4.140 21 H 0.026 0.974 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.023 0.977 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.407 0.593 30 H 0.290 0.710 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.749 2.716 7.485 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.247 5.247 3 C -0.125 4.125 4 C -0.005 4.005 5 C 0.032 3.968 6 N -0.879 5.879 7 S 2.819 3.181 8 O -0.999 6.999 9 O -1.000 7.000 10 C -1.156 5.156 11 H 0.119 0.881 12 C -0.085 4.085 13 N -0.476 5.476 14 Si 0.742 3.258 15 H -0.189 1.189 16 H -0.202 1.202 17 H -0.189 1.189 18 C -0.209 4.209 19 C -0.176 4.176 20 C -0.177 4.177 21 H 0.044 0.956 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.238 0.762 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.966 3.118 6.267 14.735 hybrid contribution -0.031 -0.708 1.608 1.757 sum -12.997 2.410 7.875 15.387 Atomic orbital electron populations 1.22488 0.88141 1.02212 0.99890 1.61766 1.06864 1.13886 1.42192 1.22389 1.01993 0.88193 0.99967 1.22725 0.95525 0.94724 0.87551 1.20719 0.91791 0.98516 0.85754 1.55649 1.27677 1.78266 1.26274 1.00223 0.70046 0.74299 0.73512 1.93367 1.85804 1.78330 1.42392 1.93340 1.77238 1.42412 1.87041 1.30601 1.06822 1.46851 1.31305 0.88148 1.24730 0.96607 0.93365 0.93764 1.69895 1.13779 1.38008 1.25905 0.86241 0.78194 0.80711 0.80617 1.18918 1.20167 1.18936 1.23538 1.01873 0.97275 0.98235 1.22775 1.02057 0.96327 0.96453 1.23323 1.00326 0.98369 0.95706 0.95573 0.91748 0.91150 0.90290 0.91633 0.95855 0.90834 0.91775 0.76159 0.89928 0.90981 0.90098 0.89585 0.91583 0.89479 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.43 60.06 0.51 0.73 16 2 N -0.52 -7.21 4.65 -234.46 -1.09 -8.30 16 3 C 0.02 0.30 9.18 60.06 0.55 0.86 16 4 C 0.09 1.18 0.66 -130.79 -0.09 1.09 16 5 C 0.16 2.77 5.19 -4.04 -0.02 2.75 16 6 N -1.12 -22.77 5.76 -10.61 -0.06 -22.84 16 7 S 2.72 72.91 5.02 -107.50 -0.54 72.37 16 8 O -1.01 -30.19 18.02 -57.17 -1.03 -31.22 16 9 O -1.01 -29.64 17.47 -57.17 -1.00 -30.64 16 10 C -1.02 -28.31 9.72 30.60 0.30 -28.01 16 11 H 0.10 2.52 7.81 -52.49 -0.41 2.11 16 12 C 0.13 3.75 5.46 -17.82 -0.10 3.66 16 13 N -0.85 -25.23 13.19 55.43 0.73 -24.50 16 14 Si 0.92 20.74 29.54 -169.99 -5.02 15.72 16 15 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 18 C -0.17 -1.92 6.17 -25.92 -0.16 -2.08 16 19 C -0.14 -1.47 7.75 -25.83 -0.20 -1.67 16 20 C -0.14 -1.64 6.90 -25.83 -0.18 -1.82 16 21 H 0.03 0.25 6.18 -51.93 -0.32 -0.07 16 22 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 23 H 0.07 0.71 6.51 -51.93 -0.34 0.37 16 24 H 0.08 1.25 6.89 -51.93 -0.36 0.89 16 25 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 26 H 0.02 0.27 7.56 -51.93 -0.39 -0.12 16 27 H 0.07 1.35 6.89 -51.93 -0.36 0.99 16 28 H 0.06 1.05 7.35 -51.93 -0.38 0.66 16 29 H 0.41 7.59 8.54 -34.47 -0.29 7.30 16 30 H 0.29 7.80 8.31 -40.82 -0.34 7.46 16 31 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.08 0.84 6.35 -51.93 -0.33 0.51 16 33 H 0.09 0.93 7.66 -51.93 -0.40 0.53 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.90 5.62 -51.93 -0.29 0.61 16 36 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 300.63 15.07 4.53 4.53 Total: -1.00 -34.70 300.63 -7.98 -42.68 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.11 Total: 6.71 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 0.61 Total: -24.50 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.42 Total: -55.64 kcal Atomic # 8 Polarization: -59.83 SS G_CDS: -2.03 Total: -61.86 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 72.91 SS G_CDS: -0.54 Total: 72.37 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.70 -7.98 -42.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097932790.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.958 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds