Wall clock time and date at job start Mon Mar 30 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 110.99805 * 2 1 4 4 C 1.46900 * 110.99518 * 123.95034 * 2 1 3 5 5 C 1.53005 * 112.84669 * 167.24312 * 4 2 1 6 6 N 1.46500 * 109.47178 * 310.26916 * 5 4 2 7 7 S 1.65599 * 120.00165 * 163.70388 * 6 5 4 8 8 O 1.42104 * 106.40128 * 178.54429 * 7 6 5 9 9 O 1.42104 * 106.40292 * 311.46126 * 7 6 5 10 10 C 1.76205 * 107.21653 * 65.00357 * 7 6 5 11 11 H 1.07996 * 119.99842 * 0.02562 * 10 7 6 12 12 C 1.37872 * 119.99652 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00350 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99711 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46975 * 60.00295 * 14 12 10 16 16 H 1.48501 * 109.47376 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47349 * 300.00544 * 14 12 10 18 18 C 1.53781 * 113.62016 * 298.43575 * 4 2 1 19 19 C 1.53778 * 87.17134 * 139.94119 * 18 4 2 20 20 C 1.53778 * 113.61524 * 35.93803 * 4 2 1 21 21 H 1.09000 * 109.47537 * 288.81671 * 1 2 3 22 22 H 1.08999 * 109.47533 * 48.81680 * 1 2 3 23 23 H 1.09000 * 109.47052 * 168.81590 * 1 2 3 24 24 H 1.09007 * 109.47079 * 179.03793 * 3 2 1 25 25 H 1.09000 * 109.47379 * 299.04094 * 3 2 1 26 26 H 1.09003 * 109.47535 * 59.04314 * 3 2 1 27 27 H 1.08999 * 109.47037 * 70.27076 * 5 4 2 28 28 H 1.09000 * 109.47037 * 190.27296 * 5 4 2 29 29 H 0.97003 * 119.99639 * 343.71328 * 6 5 4 30 30 H 0.96998 * 120.00022 * 179.97438 * 13 12 10 31 31 H 1.09000 * 113.61658 * 254.53954 * 18 4 2 32 32 H 1.08998 * 113.61001 * 25.35226 * 18 4 2 33 33 H 1.08997 * 113.61108 * 89.16588 * 19 18 4 34 34 H 1.09001 * 113.61241 * 220.06300 * 19 18 4 35 35 H 1.08995 * 113.61528 * 334.56440 * 20 4 2 36 36 H 1.09000 * 113.61473 * 105.38836 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1377 5 6 3.4920 -1.0588 1.0151 6 7 3.7734 -1.6183 -0.3092 7 16 5.3279 -1.6572 -0.8785 8 8 5.2725 -2.2805 -2.1544 9 8 5.8639 -0.3576 -0.6711 10 6 6.2392 -2.7441 0.1670 11 1 5.7490 -3.2332 0.9958 12 6 7.5777 -2.9708 -0.0736 13 7 8.1744 -2.3755 -1.0831 14 14 8.5439 -4.1224 1.0353 15 1 7.9370 -5.4770 0.9912 16 1 9.9515 -4.1947 0.5676 17 1 8.5115 -3.6107 2.4290 18 6 1.5897 -0.1937 2.5062 19 6 1.3935 -1.6466 2.9703 20 6 1.1509 -2.0014 1.4920 21 1 -0.3634 0.3315 0.9727 22 1 -0.3634 0.6767 -0.7734 23 1 -0.3633 -1.0081 -0.1993 24 1 3.0849 1.3424 0.0173 25 1 1.6598 1.8894 -0.8984 26 1 1.6321 1.9001 0.8813 27 1 4.0550 -0.1347 1.1462 28 1 3.7861 -1.7753 1.7821 29 1 3.0489 -1.9659 -0.8527 30 1 9.1162 -2.5348 -1.2521 31 1 2.3996 0.3236 3.0206 32 1 0.6664 0.3851 2.4811 33 1 2.2947 -2.0977 3.3855 34 1 0.5177 -1.7881 3.6036 35 1 0.1070 -1.9180 1.1899 36 1 1.6061 -2.9435 1.1865 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097932790.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:06 Heat of formation + Delta-G solvation = -90.627389 kcal Electronic energy + Delta-G solvation = -19053.606858 eV Core-core repulsion = 16084.925756 eV Total energy + Delta-G solvation = -2968.681102 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25375 -37.33788 -36.07949 -35.66141 -35.34013 -34.99678 -29.03015 -28.23363 -27.81127 -26.30106 -25.03203 -22.95771 -20.99088 -19.29253 -19.12548 -18.07019 -17.77061 -17.01977 -16.55007 -15.99776 -15.80837 -15.59485 -15.29664 -15.00714 -14.39052 -14.06414 -13.95027 -13.40022 -13.27600 -13.06729 -12.97933 -12.86868 -12.46406 -12.43974 -12.35253 -12.31257 -12.29122 -12.16200 -11.75686 -11.38663 -11.21771 -11.07880 -10.93825 -10.05782 -9.05564 -8.72755 -7.45986 0.43060 1.35061 1.37308 1.50138 2.22617 2.60290 2.89997 3.20641 3.56268 3.70215 3.74653 3.82757 3.96439 4.33163 4.44568 4.51359 4.53171 4.62135 4.64997 4.73948 4.77111 4.84938 4.92858 5.05426 5.09530 5.13052 5.14722 5.19656 5.25292 5.35605 5.53263 5.92093 6.16628 6.26840 6.54170 6.80330 8.23342 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028355 B = 0.006702 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.245274 B = 4176.807890 C = 4714.428204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.547 5.547 3 C 0.024 3.976 4 C 0.077 3.923 5 C 0.152 3.848 6 N -1.106 6.106 7 S 2.724 3.276 8 O -1.049 7.049 9 O -1.046 7.046 10 C -1.041 5.041 11 H 0.121 0.879 12 C 0.068 3.932 13 N -0.896 5.896 14 Si 0.990 3.010 15 H -0.250 1.250 16 H -0.265 1.265 17 H -0.248 1.248 18 C -0.160 4.160 19 C -0.131 4.131 20 C -0.136 4.136 21 H 0.041 0.959 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.044 0.956 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.415 0.585 30 H 0.298 0.702 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.262 1.756 9.626 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.270 5.270 3 C -0.124 4.124 4 C -0.014 4.014 5 C 0.025 3.975 6 N -0.865 5.865 7 S 2.824 3.176 8 O -1.039 7.039 9 O -1.036 7.036 10 C -1.174 5.174 11 H 0.139 0.861 12 C -0.144 4.144 13 N -0.527 5.527 14 Si 0.808 3.192 15 H -0.174 1.174 16 H -0.189 1.189 17 H -0.172 1.172 18 C -0.200 4.200 19 C -0.169 4.169 20 C -0.174 4.174 21 H 0.060 0.940 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.249 0.751 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.508 2.172 8.397 16.903 hybrid contribution 0.360 -0.349 0.916 1.045 sum -14.148 1.823 9.313 17.036 Atomic orbital electron populations 1.22540 0.85963 1.03008 1.01056 1.61719 1.08888 1.13732 1.42694 1.22321 0.99929 0.88873 1.01243 1.22670 0.93128 0.96580 0.89053 1.20965 0.94892 0.97755 0.83937 1.55004 1.25471 1.78323 1.27709 0.99734 0.71223 0.73578 0.73034 1.93300 1.86954 1.78791 1.44851 1.93288 1.78863 1.44041 1.87363 1.30927 1.07605 1.46989 1.31925 0.86065 1.26040 0.97947 0.95112 0.95317 1.69999 1.14709 1.39966 1.28070 0.85170 0.76894 0.78441 0.78715 1.17413 1.18896 1.17189 1.23510 1.02318 0.98027 0.96145 1.22762 1.02866 0.95260 0.95992 1.23367 1.00830 0.96712 0.96454 0.94016 0.91035 0.90425 0.93660 0.90893 0.94027 0.92655 0.90785 0.75059 0.89172 0.91427 0.88422 0.90045 0.89302 0.87557 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 8.43 127.69 1.08 1.48 16 2 N -0.55 -14.30 4.65 -895.68 -4.17 -18.47 16 3 C 0.02 0.65 9.18 127.69 1.17 1.82 16 4 C 0.08 1.99 0.66 4.05 0.00 1.99 16 5 C 0.15 5.23 5.19 86.38 0.45 5.68 16 6 N -1.11 -45.48 5.76 -187.48 -1.08 -46.56 16 7 S 2.72 150.37 5.02 -56.49 -0.28 150.08 16 8 O -1.05 -64.94 18.02 -128.00 -2.31 -67.24 16 9 O -1.05 -63.90 17.47 -128.00 -2.24 -66.14 16 10 C -1.04 -57.92 9.72 67.73 0.66 -57.26 16 11 H 0.12 5.99 7.81 -2.91 -0.02 5.97 16 12 C 0.07 3.86 5.46 84.65 0.46 4.32 16 13 N -0.90 -54.50 13.19 21.45 0.28 -54.22 16 14 Si 0.99 41.53 29.54 68.60 2.03 43.56 16 15 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 16 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 17 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 18 C -0.16 -3.22 6.17 31.12 0.19 -3.03 16 19 C -0.13 -2.37 7.75 31.18 0.24 -2.13 16 20 C -0.14 -2.84 6.90 31.18 0.22 -2.63 16 21 H 0.04 0.65 6.18 -2.39 -0.01 0.64 16 22 H 0.07 1.23 8.05 -2.39 -0.02 1.21 16 23 H 0.08 1.34 6.51 -2.39 -0.02 1.32 16 24 H 0.04 1.49 6.89 -2.38 -0.02 1.47 16 25 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 26 H 0.04 0.92 7.56 -2.39 -0.02 0.90 16 27 H 0.06 2.10 6.89 -2.39 -0.02 2.08 16 28 H 0.07 2.37 7.35 -2.39 -0.02 2.35 16 29 H 0.42 15.64 8.54 -96.74 -0.83 14.81 16 30 H 0.30 16.31 8.31 -92.71 -0.77 15.54 16 31 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 32 H 0.10 1.67 6.35 -2.39 -0.02 1.65 16 33 H 0.08 1.56 7.66 -2.39 -0.02 1.54 16 34 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.11 1.82 5.62 -2.39 -0.01 1.81 16 36 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 Total: -1.00 -76.39 300.63 -3.04 -79.43 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.26 Total: 29.31 kcal Atomic # 6 Polarization: -54.23 SS G_CDS: 4.47 Total: -49.76 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -4.97 Total: -119.25 kcal Atomic # 8 Polarization: -128.84 SS G_CDS: -4.54 Total: -133.38 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 150.37 SS G_CDS: -0.28 Total: 150.08 kcal Total: -76.39 -3.04 -79.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097932790.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.198 kcal (2) G-P(sol) polarization free energy of solvation -76.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds