Wall clock time and date at job start Mon Mar 30 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 120.00299 * 2 1 4 4 C 1.50694 * 109.47577 * 270.00185 * 3 2 1 5 5 H 1.08006 * 119.99824 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00104 * 179.97438 * 4 3 2 7 7 N 1.31522 * 119.99762 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00252 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47244 * 89.99325 * 8 6 4 10 10 H 1.48492 * 109.47255 * 209.99574 * 8 6 4 11 11 H 1.48500 * 109.46991 * 329.99522 * 8 6 4 12 12 C 1.39670 * 120.00104 * 180.02562 * 2 1 3 13 13 C 1.38988 * 119.89689 * 179.97438 * 12 2 1 14 14 C 1.38255 * 119.75032 * 179.97438 * 13 12 2 15 15 C 1.37751 * 120.01296 * 359.97438 * 14 13 12 16 16 C 1.38968 * 120.92721 * 0.02562 * 15 14 13 17 17 C 1.38612 * 119.89281 * 359.97438 * 12 2 1 18 18 N 1.39544 * 110.22301 * 180.02562 * 16 15 14 19 19 C 1.34356 * 112.24822 * 359.97438 * 18 16 15 20 20 O 1.21287 * 126.43266 * 180.02562 * 19 18 16 21 21 C 1.51167 * 132.75308 * 180.02562 * 15 14 13 22 22 H 1.08998 * 110.62783 * 298.69564 * 21 15 14 23 23 O 1.42905 * 110.50765 * 61.34142 * 21 15 14 24 24 H 1.08999 * 109.46516 * 270.00022 * 1 2 3 25 25 H 1.09001 * 109.46911 * 29.99266 * 1 2 3 26 26 H 1.08996 * 109.46967 * 149.99397 * 1 2 3 27 27 H 1.09008 * 109.46911 * 30.00414 * 3 2 1 28 28 H 1.09003 * 109.46991 * 149.99746 * 3 2 1 29 29 H 0.97002 * 119.99629 * 180.02562 * 7 6 4 30 30 H 1.07996 * 120.11971 * 359.97001 * 13 12 2 31 31 H 1.08006 * 119.98673 * 179.97438 * 14 13 12 32 32 H 1.08004 * 119.96285 * 0.02562 * 17 12 2 33 33 H 0.96998 * 123.87395 * 180.02562 * 18 16 15 34 34 H 0.96696 * 114.00036 * 176.10644 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7038 -1.4207 5 1 2.0975 1.0963 -2.2417 6 6 3.1262 2.8780 -1.6726 7 7 3.3458 3.2574 -2.9126 8 14 3.7332 3.9292 -0.2527 9 1 5.1067 3.5079 0.1232 10 1 3.7481 5.3559 -0.6641 11 1 2.8272 3.7592 0.9116 12 6 2.1634 -1.2096 -0.0005 13 6 3.5533 -1.2070 -0.0011 14 6 4.2415 -2.4061 -0.0011 15 6 3.5500 -3.5975 0.0000 16 6 2.1604 -3.6168 0.0005 17 6 1.4681 -2.4087 -0.0005 18 7 1.6963 -4.9327 0.0022 19 6 2.6998 -5.8261 0.0023 20 8 2.5890 -7.0339 0.0031 21 6 3.9949 -5.0422 0.0008 22 1 4.5756 -5.2657 -0.8941 23 8 4.7561 -5.3310 1.1752 24 1 -0.3632 0.0000 1.0277 25 1 -0.3633 0.8901 -0.5137 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6085 2.0284 0.5139 28 1 3.1500 1.1383 0.5139 29 1 3.8227 4.0833 -3.0897 30 1 4.0935 -0.2719 -0.0016 31 1 5.3216 -2.4086 -0.0019 32 1 0.3881 -2.4060 -0.0005 33 1 0.7570 -5.1747 0.0025 34 1 5.0167 -6.2586 1.2568 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102452919.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:58 Heat of formation + Delta-G solvation = -27.810790 kcal Electronic energy + Delta-G solvation = -19193.265202 eV Core-core repulsion = 16091.864080 eV Total energy + Delta-G solvation = -3101.401121 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37061 -38.75381 -36.94256 -36.25539 -34.47976 -32.70607 -30.73349 -29.52090 -28.24784 -27.24764 -24.69298 -22.52829 -21.83121 -21.29465 -19.96733 -17.73595 -17.71957 -17.02338 -16.62142 -16.22400 -15.31028 -15.05183 -14.73895 -14.37108 -14.27751 -13.71761 -13.53653 -13.07767 -12.81864 -12.55303 -12.45736 -12.17804 -11.79499 -11.60681 -11.19717 -10.93024 -10.75723 -10.67663 -10.39056 -10.22904 -9.82729 -9.65628 -9.07358 -8.72892 -7.96734 -6.67756 -6.21622 -4.22779 1.40598 1.84146 2.50884 2.96402 3.17274 3.24838 3.26367 3.81069 4.08731 4.11965 4.26089 4.41018 4.65825 5.08664 5.13545 5.26505 5.47958 5.66122 5.80644 5.84681 5.86372 5.95092 6.17239 6.28866 6.52031 6.58556 6.65338 6.79800 6.84091 6.91845 7.25162 7.39028 7.43807 7.83930 7.86841 8.11000 8.40005 8.85036 9.37469 10.91240 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032309 B = 0.004882 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.424861 B = 5733.931967 C = 6150.560599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.602 5.602 3 C 0.218 3.782 4 C -0.539 4.539 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.892 5.892 8 Si 0.872 3.128 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.276 3.724 13 C -0.202 4.202 14 C -0.003 4.003 15 C -0.221 4.221 16 C 0.187 3.813 17 C -0.234 4.234 18 N -0.654 5.654 19 C 0.505 3.495 20 O -0.513 6.513 21 C 0.133 3.867 22 H 0.101 0.899 23 O -0.534 6.534 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.266 0.734 30 H 0.139 0.861 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.409 0.591 34 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.603 -11.619 6.906 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.306 5.306 3 C 0.098 3.902 4 C -0.577 4.577 5 H 0.095 0.905 6 C -0.129 4.129 7 N -0.530 5.530 8 Si 0.698 3.302 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.167 3.833 13 C -0.225 4.225 14 C -0.022 4.022 15 C -0.226 4.226 16 C 0.090 3.910 17 C -0.260 4.260 18 N -0.297 5.297 19 C 0.291 3.709 20 O -0.388 6.388 21 C 0.071 3.929 22 H 0.118 0.882 23 O -0.339 6.339 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.157 0.843 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.247 0.753 34 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.675 -11.294 6.899 13.341 hybrid contribution -0.206 0.031 0.341 0.400 sum -1.881 -11.264 7.241 13.522 Atomic orbital electron populations 1.21575 0.80677 1.02635 1.00060 1.46813 1.04703 1.03844 1.75262 1.19750 0.92074 0.80325 0.98089 1.21432 1.37369 1.07462 0.91436 0.90453 1.24888 0.95306 0.97194 0.95485 1.69898 1.40942 1.23491 1.18691 0.86921 0.80014 0.80269 0.82964 1.19768 1.20931 1.18997 1.17479 0.91238 0.85278 0.89290 1.20829 0.92372 0.98597 1.10744 1.19937 0.99281 0.89518 0.93475 1.18994 0.92088 0.92755 1.18763 1.17638 0.92707 0.83565 0.97089 1.19598 0.99138 0.88537 1.18730 1.43629 1.10135 1.05560 1.70403 1.21611 0.88352 0.86565 0.74337 1.90775 1.86463 1.12226 1.49351 1.20833 0.89277 0.92287 0.90507 0.88172 1.86702 1.72588 1.32344 1.42287 0.94118 0.90881 0.92250 0.95101 0.95125 0.92399 0.84287 0.85770 0.85928 0.75298 0.77083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.44 10.18 59.85 0.61 2.05 16 2 N -0.60 -11.42 2.99 -181.07 -0.54 -11.96 16 3 C 0.22 4.75 3.97 -5.20 -0.02 4.73 16 4 C -0.54 -14.09 9.94 -34.44 -0.34 -14.43 16 5 H 0.08 2.28 8.06 -52.48 -0.42 1.85 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 7 N -0.89 -25.92 13.96 55.43 0.77 -25.14 16 8 Si 0.87 19.73 27.47 -169.99 -4.67 15.07 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -5.69 6.54 56.52 0.37 -5.32 16 12 C 0.28 4.98 6.54 -83.87 -0.55 4.43 16 13 C -0.20 -3.64 9.22 -39.30 -0.36 -4.00 16 14 C 0.00 -0.04 10.03 -39.75 -0.40 -0.44 16 15 C -0.22 -3.36 6.03 -104.30 -0.63 -3.99 16 16 C 0.19 2.77 7.10 -83.71 -0.59 2.18 16 17 C -0.23 -3.64 9.23 -39.07 -0.36 -4.00 16 18 N -0.65 -8.45 5.88 -9.72 -0.06 -8.51 16 19 C 0.50 7.02 8.38 -10.84 -0.09 6.93 16 20 O -0.51 -8.12 18.03 5.55 0.10 -8.02 16 21 C 0.13 1.74 4.35 -28.47 -0.12 1.62 16 22 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 23 O -0.53 -6.68 13.38 -35.23 -0.47 -7.16 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 26 H 0.06 0.80 6.18 -51.93 -0.32 0.48 16 27 H 0.03 0.67 7.13 -51.92 -0.37 0.30 16 28 H 0.03 0.66 5.61 -51.93 -0.29 0.37 16 29 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.14 2.65 6.13 -52.49 -0.32 2.33 16 31 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 32 H 0.12 1.65 6.11 -52.48 -0.32 1.33 16 33 H 0.41 4.28 8.96 -40.82 -0.37 3.92 16 34 H 0.38 3.17 9.10 45.56 0.41 3.59 16 LS Contribution 290.92 15.07 4.38 4.38 Total: -1.00 -31.21 290.92 -6.29 -37.50 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -2.85 Total: 6.85 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.96 Total: -3.00 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.17 Total: -45.62 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.37 Total: -15.18 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.67 Total: 15.07 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.21 -6.29 -37.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102452919.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.692 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds