Wall clock time and date at job start Mon Mar 30 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 120.00299 * 2 1 4 4 C 1.50694 * 109.47577 * 270.00185 * 3 2 1 5 5 H 1.08006 * 119.99824 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00104 * 179.97438 * 4 3 2 7 7 N 1.31522 * 119.99762 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00252 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47244 * 89.99325 * 8 6 4 10 10 H 1.48492 * 109.47255 * 209.99574 * 8 6 4 11 11 H 1.48500 * 109.46991 * 329.99522 * 8 6 4 12 12 C 1.39670 * 120.00104 * 180.02562 * 2 1 3 13 13 C 1.38988 * 119.89689 * 179.97438 * 12 2 1 14 14 C 1.38255 * 119.75032 * 179.97438 * 13 12 2 15 15 C 1.37751 * 120.01296 * 359.97438 * 14 13 12 16 16 C 1.38968 * 120.92721 * 0.02562 * 15 14 13 17 17 C 1.38612 * 119.89281 * 359.97438 * 12 2 1 18 18 N 1.39544 * 110.22301 * 180.02562 * 16 15 14 19 19 C 1.34356 * 112.24822 * 359.97438 * 18 16 15 20 20 O 1.21287 * 126.43266 * 180.02562 * 19 18 16 21 21 C 1.51167 * 132.75308 * 180.02562 * 15 14 13 22 22 H 1.08998 * 110.62783 * 298.69564 * 21 15 14 23 23 O 1.42905 * 110.50765 * 61.34142 * 21 15 14 24 24 H 1.08999 * 109.46516 * 270.00022 * 1 2 3 25 25 H 1.09001 * 109.46911 * 29.99266 * 1 2 3 26 26 H 1.08996 * 109.46967 * 149.99397 * 1 2 3 27 27 H 1.09008 * 109.46911 * 30.00414 * 3 2 1 28 28 H 1.09003 * 109.46991 * 149.99746 * 3 2 1 29 29 H 0.97002 * 119.99629 * 180.02562 * 7 6 4 30 30 H 1.07996 * 120.11971 * 359.97001 * 13 12 2 31 31 H 1.08006 * 119.98673 * 179.97438 * 14 13 12 32 32 H 1.08004 * 119.96285 * 0.02562 * 17 12 2 33 33 H 0.96998 * 123.87395 * 180.02562 * 18 16 15 34 34 H 0.96696 * 114.00036 * 176.10644 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7038 -1.4207 5 1 2.0975 1.0963 -2.2417 6 6 3.1262 2.8780 -1.6726 7 7 3.3458 3.2574 -2.9126 8 14 3.7332 3.9292 -0.2527 9 1 5.1067 3.5079 0.1232 10 1 3.7481 5.3559 -0.6641 11 1 2.8272 3.7592 0.9116 12 6 2.1634 -1.2096 -0.0005 13 6 3.5533 -1.2070 -0.0011 14 6 4.2415 -2.4061 -0.0011 15 6 3.5500 -3.5975 0.0000 16 6 2.1604 -3.6168 0.0005 17 6 1.4681 -2.4087 -0.0005 18 7 1.6963 -4.9327 0.0022 19 6 2.6998 -5.8261 0.0023 20 8 2.5890 -7.0339 0.0031 21 6 3.9949 -5.0422 0.0008 22 1 4.5756 -5.2657 -0.8941 23 8 4.7561 -5.3310 1.1752 24 1 -0.3632 0.0000 1.0277 25 1 -0.3633 0.8901 -0.5137 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6085 2.0284 0.5139 28 1 3.1500 1.1383 0.5139 29 1 3.8227 4.0833 -3.0897 30 1 4.0935 -0.2719 -0.0016 31 1 5.3216 -2.4086 -0.0019 32 1 0.3881 -2.4060 -0.0005 33 1 0.7570 -5.1747 0.0025 34 1 5.0167 -6.2586 1.2568 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102452919.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:57 Heat of formation + Delta-G solvation = -51.924156 kcal Electronic energy + Delta-G solvation = -19194.310836 eV Core-core repulsion = 16091.864080 eV Total energy + Delta-G solvation = -3102.446755 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.50880 -40.01978 -38.19449 -37.28031 -35.81296 -34.62099 -32.09287 -30.78294 -29.83285 -28.42714 -26.18320 -24.00196 -23.21798 -22.37834 -21.27764 -19.04205 -18.94303 -18.75462 -17.82351 -17.49290 -16.60135 -16.42738 -16.06970 -15.81519 -15.45271 -15.09128 -14.75319 -14.67028 -14.18334 -13.90691 -13.69434 -13.63747 -13.18204 -13.10276 -12.63939 -12.46398 -12.17375 -11.95302 -11.84404 -11.70104 -11.61442 -10.91335 -10.77698 -10.42794 -9.18520 -8.29222 -8.05489 -6.34631 0.20217 0.59252 1.34800 1.40249 1.40655 1.50466 1.86306 2.34911 2.48672 2.90178 2.99501 3.05815 3.34652 3.58943 3.98637 4.25832 4.28219 4.41690 4.54234 4.62258 4.66812 4.75826 4.89286 4.95579 5.00268 5.12902 5.39267 5.48377 5.50005 5.58779 5.72443 5.99070 6.13889 6.56807 6.62971 6.71695 6.74683 6.82762 7.30771 8.88005 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032309 B = 0.004882 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.424861 B = 5733.931967 C = 6150.560599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.618 5.618 3 C 0.228 3.772 4 C -0.535 4.535 5 H 0.028 0.972 6 C 0.014 3.986 7 N -0.946 5.946 8 Si 0.943 3.057 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.241 1.241 12 C 0.254 3.746 13 C -0.226 4.226 14 C -0.002 4.002 15 C -0.225 4.225 16 C 0.188 3.812 17 C -0.227 4.227 18 N -0.643 5.643 19 C 0.507 3.493 20 O -0.531 6.531 21 C 0.137 3.863 22 H 0.124 0.876 23 O -0.544 6.544 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.267 0.733 30 H 0.120 0.880 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.422 0.578 34 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 -12.804 8.770 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.323 5.323 3 C 0.105 3.895 4 C -0.574 4.574 5 H 0.047 0.953 6 C -0.184 4.184 7 N -0.586 5.586 8 Si 0.766 3.234 9 H -0.189 1.189 10 H -0.211 1.211 11 H -0.165 1.165 12 C 0.146 3.854 13 C -0.250 4.250 14 C -0.021 4.021 15 C -0.230 4.230 16 C 0.091 3.909 17 C -0.253 4.253 18 N -0.288 5.288 19 C 0.295 3.705 20 O -0.408 6.408 21 C 0.076 3.924 22 H 0.141 0.859 23 O -0.352 6.352 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.262 0.738 34 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.809 -12.541 8.785 15.418 hybrid contribution -0.181 0.227 -0.301 0.419 sum -1.991 -12.314 8.484 15.085 Atomic orbital electron populations 1.21736 0.78793 1.02894 1.01709 1.46761 1.05894 1.03139 1.76534 1.19450 0.92966 0.82067 0.94970 1.21641 1.36413 1.06692 0.92649 0.95321 1.25821 0.95538 0.98764 0.98245 1.70067 1.42729 1.24405 1.21442 0.85784 0.80041 0.77717 0.79884 1.18892 1.21107 1.16456 1.17700 0.91452 0.85780 0.90439 1.20822 0.92796 0.98732 1.12620 1.20079 1.00238 0.89056 0.92732 1.19297 0.92534 0.93727 1.17482 1.17677 0.92773 0.84072 0.96387 1.19715 1.00207 0.87815 1.17542 1.43544 1.10924 1.04591 1.69710 1.21714 0.88753 0.86280 0.73785 1.90776 1.86723 1.12984 1.50337 1.20820 0.89360 0.90543 0.91715 0.85890 1.86655 1.72340 1.34273 1.41909 0.91605 0.92191 0.90502 0.94236 0.94534 0.92399 0.86231 0.84025 0.83758 0.73832 0.74864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.67 10.18 127.77 1.30 3.97 16 2 N -0.62 -23.10 2.99 -726.78 -2.17 -25.28 16 3 C 0.23 9.86 3.97 85.63 0.34 10.20 16 4 C -0.54 -28.83 9.94 25.60 0.25 -28.58 16 5 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 6 C 0.01 0.79 5.47 84.65 0.46 1.26 16 7 N -0.95 -56.89 13.96 21.45 0.30 -56.59 16 8 Si 0.94 40.70 27.47 68.60 1.88 42.58 16 9 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 12 C 0.25 8.97 6.54 38.16 0.25 9.22 16 13 C -0.23 -8.12 9.22 22.45 0.21 -7.91 16 14 C 0.00 -0.05 10.03 22.16 0.22 0.17 16 15 C -0.23 -6.39 6.03 -19.66 -0.12 -6.50 16 16 C 0.19 5.17 7.10 38.33 0.27 5.44 16 17 C -0.23 -6.63 9.23 22.60 0.21 -6.42 16 18 N -0.64 -14.93 5.88 -303.28 -1.78 -16.71 16 19 C 0.51 12.77 8.38 87.94 0.74 13.51 16 20 O -0.53 -15.57 18.03 -3.05 -0.05 -15.62 16 21 C 0.14 3.22 4.35 29.47 0.13 3.35 16 22 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 23 O -0.54 -12.05 13.38 -148.98 -1.99 -14.05 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 26 H 0.08 1.93 6.18 -2.39 -0.01 1.91 16 27 H 0.04 1.65 7.13 -2.38 -0.02 1.63 16 28 H 0.04 1.55 5.61 -2.39 -0.01 1.54 16 29 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.12 4.67 6.13 -2.91 -0.02 4.66 16 31 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.14 3.48 6.11 -2.91 -0.02 3.46 16 33 H 0.42 7.65 8.96 -92.71 -0.83 6.82 16 34 H 0.40 5.49 9.10 -74.06 -0.67 4.81 16 Total: -1.00 -68.41 290.92 0.05 -68.36 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -0.40 Total: 19.60 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 4.26 Total: -2.30 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -3.66 Total: -98.58 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -2.05 Total: -29.67 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.88 Total: 42.58 kcal Total: -68.41 0.05 -68.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102452919.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.438 kcal (2) G-P(sol) polarization free energy of solvation -68.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds