Wall clock time and date at job start Mon Mar 30 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.46684 * 2 1 4 4 C 1.46899 * 111.00459 * 69.85214 * 3 2 1 5 5 C 1.52784 * 109.42424 * 187.10922 * 4 3 2 6 6 N 1.47075 * 108.76915 * 306.42435 * 5 4 3 7 7 S 1.65599 * 120.88415 * 231.12486 * 6 5 4 8 8 O 1.42097 * 106.40554 * 156.18179 * 7 6 5 9 9 O 1.42103 * 106.39967 * 23.25585 * 7 6 5 10 10 C 1.76202 * 107.21448 * 269.72005 * 7 6 5 11 11 H 1.07995 * 120.00269 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99626 * 179.72082 * 10 7 6 13 13 N 1.31515 * 119.99902 * 0.27511 * 12 10 7 14 14 Si 1.86800 * 119.99746 * 180.27634 * 12 10 7 15 15 H 1.48499 * 109.47073 * 60.00152 * 14 12 10 16 16 H 1.48504 * 109.47071 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47323 * 300.00210 * 14 12 10 18 18 C 1.47087 * 118.23436 * 50.85038 * 6 5 4 19 19 C 1.46909 * 110.99587 * 194.15230 * 3 2 1 20 20 H 1.08997 * 109.49323 * 292.70107 * 19 3 2 21 21 C 1.52999 * 109.49077 * 52.78808 * 19 3 2 22 22 H 1.08996 * 109.46939 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46850 * 299.99640 * 1 2 3 24 24 H 1.08997 * 109.47421 * 60.00080 * 1 2 3 25 25 H 1.09000 * 109.46850 * 240.00360 * 2 1 3 26 26 H 1.08999 * 109.46990 * 119.99629 * 2 1 3 27 27 H 1.08997 * 109.49015 * 307.21173 * 4 3 2 28 28 H 1.09003 * 109.49262 * 67.25992 * 4 3 2 29 29 H 1.08998 * 109.55364 * 186.61055 * 5 4 3 30 30 H 1.08999 * 109.45392 * 66.18116 * 5 4 3 31 31 H 0.97000 * 119.99817 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.62866 * 68.80172 * 18 6 5 33 33 H 1.09004 * 109.62663 * 189.18481 * 18 6 5 34 34 H 1.09002 * 109.46916 * 172.60193 * 21 19 3 35 35 H 1.09000 * 109.47088 * 292.59949 * 21 19 3 36 36 H 1.09003 * 109.47287 * 52.60747 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7497 2.0389 1.2875 5 6 2.1098 3.5205 1.1902 6 7 3.4946 3.6404 0.7094 7 16 4.5959 4.5785 1.5152 8 8 5.8791 4.0685 1.1800 9 8 4.1279 4.6876 2.8525 10 6 4.5075 6.1967 0.8237 11 1 3.8144 6.4042 0.0218 12 6 5.3188 7.1997 1.3105 13 7 6.1624 6.9472 2.2873 14 14 5.2196 8.9172 0.5826 15 1 3.8450 9.4507 0.7583 16 1 6.1880 9.8050 1.2750 17 1 5.5476 8.8612 -0.8647 18 6 3.8769 2.9000 -0.5026 19 6 3.4489 1.4381 -0.3353 20 1 4.0278 0.9790 0.4660 21 6 3.6951 0.6813 -1.6421 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.6929 1.9354 1.5334 28 1 2.3519 1.5710 2.0663 29 1 2.0223 3.9825 2.1736 30 1 1.4351 4.0128 0.4899 31 1 6.7334 7.6527 2.6295 32 1 3.3754 3.3316 -1.3688 33 1 4.9569 2.9549 -0.6398 34 1 4.7272 0.8306 -1.9594 35 1 3.5132 -0.3820 -1.4860 36 1 3.0205 1.0563 -2.4118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104136182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:08 Heat of formation + Delta-G solvation = -84.091655 kcal Electronic energy + Delta-G solvation = -19090.238490 eV Core-core repulsion = 16121.840799 eV Total energy + Delta-G solvation = -2968.397692 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.04581 -35.29874 -34.69944 -33.94327 -33.04135 -32.56261 -30.22151 -27.17328 -26.11058 -25.42816 -22.19000 -21.74477 -19.69502 -18.70995 -17.28729 -16.35247 -15.73315 -15.27090 -15.00203 -14.68027 -14.36485 -14.19689 -13.90284 -13.51923 -13.10888 -12.33393 -12.27667 -12.00380 -11.91527 -11.81004 -11.67065 -11.34037 -11.18468 -11.16353 -10.90722 -10.79350 -10.60246 -10.49354 -10.27887 -10.03342 -9.92991 -9.21849 -8.92201 -8.38889 -7.96487 -6.67346 -5.29554 2.27641 3.10387 3.14332 3.20408 3.95086 4.08576 4.54130 4.65885 4.95560 5.07875 5.19461 5.23270 5.45262 5.48959 5.56567 5.62177 5.68605 5.76960 5.81222 5.86486 5.93030 5.97714 6.07789 6.15314 6.20549 6.23403 6.29708 6.45112 6.50569 6.80012 7.25538 7.27949 7.35549 7.60155 8.00433 8.91160 10.26059 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.035858 B = 0.006058 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.662214 B = 4620.514445 C = 4705.579529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 N -0.531 5.531 4 C 0.042 3.958 5 C 0.128 3.872 6 N -1.014 6.014 7 S 2.715 3.285 8 O -1.005 7.005 9 O -1.005 7.005 10 C -1.019 5.019 11 H 0.102 0.898 12 C 0.132 3.868 13 N -0.847 5.847 14 Si 0.921 3.079 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.264 1.264 18 C 0.134 3.866 19 C 0.067 3.933 20 H 0.044 0.956 21 C -0.146 4.146 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.029 0.971 27 H 0.082 0.918 28 H 0.035 0.965 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.291 0.709 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.691 -10.151 -6.124 14.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 N -0.257 5.257 4 C -0.087 4.087 5 C 0.001 3.999 6 N -0.849 5.849 7 S 2.817 3.183 8 O -0.995 6.995 9 O -0.995 6.995 10 C -1.153 5.153 11 H 0.120 0.880 12 C -0.085 4.085 13 N -0.477 5.477 14 Si 0.745 3.255 15 H -0.189 1.189 16 H -0.201 1.201 17 H -0.189 1.189 18 C 0.007 3.993 19 C -0.042 4.042 20 H 0.062 0.938 21 C -0.204 4.204 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.235 -10.155 -5.636 14.237 hybrid contribution 0.136 0.883 -0.096 0.899 sum -8.099 -9.272 -5.733 13.580 Atomic orbital electron populations 1.21776 0.95123 1.00995 1.02483 1.22183 0.95934 0.89565 1.00839 1.61982 1.16432 1.15893 1.31416 1.22433 1.00880 0.95741 0.89654 1.21221 0.83251 0.94863 1.00530 1.58226 1.22899 1.63849 1.39962 1.00470 0.70910 0.74417 0.72543 1.93340 1.39466 1.81902 1.84817 1.93341 1.81358 1.88116 1.36711 1.30603 1.32972 1.18215 1.33502 0.87981 1.24764 0.90990 1.00902 0.91883 1.69892 1.19171 1.36346 1.22290 0.86196 0.78985 0.80430 0.79902 1.18856 1.20139 1.18854 1.21352 1.00840 0.89296 0.87767 1.21998 0.87935 0.97092 0.97211 0.93816 1.21890 1.02245 0.99304 0.96955 0.92757 0.92725 0.91931 0.90292 0.95288 0.89928 0.94632 0.88671 0.91684 0.89864 0.91644 0.88711 0.91630 0.92648 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.93 37.16 0.37 -1.04 16 2 C 0.04 0.48 5.45 -3.82 -0.02 0.46 16 3 N -0.53 -7.51 4.45 -226.63 -1.01 -8.52 16 4 C 0.04 0.64 5.45 -3.94 -0.02 0.61 16 5 C 0.13 2.28 6.64 -3.84 -0.03 2.26 16 6 N -1.01 -21.26 3.34 -113.49 -0.38 -21.63 16 7 S 2.71 73.22 5.03 -107.50 -0.54 72.68 16 8 O -1.00 -29.50 16.63 -57.17 -0.95 -30.45 16 9 O -1.00 -29.50 16.62 -57.17 -0.95 -30.45 16 10 C -1.02 -28.47 9.75 30.60 0.30 -28.18 16 11 H 0.10 2.63 7.81 -52.49 -0.41 2.22 16 12 C 0.13 3.73 5.46 -17.82 -0.10 3.64 16 13 N -0.85 -25.16 13.19 55.43 0.73 -24.43 16 14 Si 0.92 20.78 29.54 -169.99 -5.02 15.76 16 15 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 17 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 18 C 0.13 2.41 5.95 -3.60 -0.02 2.39 16 19 C 0.07 1.02 2.61 -67.58 -0.18 0.85 16 20 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 21 C -0.15 -1.70 8.50 37.16 0.32 -1.39 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.53 6.55 -51.93 -0.34 0.19 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.81 5.60 -51.93 -0.29 0.52 16 26 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 27 H 0.08 1.04 6.36 -51.93 -0.33 0.71 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 1.78 6.93 -51.93 -0.36 1.42 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.29 7.78 8.31 -40.82 -0.34 7.44 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.80 6.93 -51.93 -0.36 1.44 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.56 6.48 -51.93 -0.34 0.22 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 298.01 15.07 4.49 4.49 Total: -1.00 -34.19 298.01 -8.37 -42.56 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.36 Total: 0.40 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 0.62 Total: -20.40 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.66 Total: -54.58 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -1.90 Total: -60.91 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 73.22 SS G_CDS: -0.54 Total: 72.68 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.19 -8.37 -42.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104136182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.535 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds