Wall clock time and date at job start Mon Mar 30 2020 05:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.46684 * 2 1 4 4 C 1.46899 * 111.00459 * 69.85214 * 3 2 1 5 5 C 1.52784 * 109.42424 * 187.10922 * 4 3 2 6 6 N 1.47075 * 108.76915 * 306.42435 * 5 4 3 7 7 S 1.65599 * 120.88415 * 231.12486 * 6 5 4 8 8 O 1.42097 * 106.40554 * 156.18179 * 7 6 5 9 9 O 1.42103 * 106.39967 * 23.25585 * 7 6 5 10 10 C 1.76202 * 107.21448 * 269.72005 * 7 6 5 11 11 H 1.07995 * 120.00269 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99626 * 179.72082 * 10 7 6 13 13 N 1.31515 * 119.99902 * 0.27511 * 12 10 7 14 14 Si 1.86800 * 119.99746 * 180.27634 * 12 10 7 15 15 H 1.48499 * 109.47073 * 60.00152 * 14 12 10 16 16 H 1.48504 * 109.47071 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47323 * 300.00210 * 14 12 10 18 18 C 1.47087 * 118.23436 * 50.85038 * 6 5 4 19 19 C 1.46909 * 110.99587 * 194.15230 * 3 2 1 20 20 H 1.08997 * 109.49323 * 292.70107 * 19 3 2 21 21 C 1.52999 * 109.49077 * 52.78808 * 19 3 2 22 22 H 1.08996 * 109.46939 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46850 * 299.99640 * 1 2 3 24 24 H 1.08997 * 109.47421 * 60.00080 * 1 2 3 25 25 H 1.09000 * 109.46850 * 240.00360 * 2 1 3 26 26 H 1.08999 * 109.46990 * 119.99629 * 2 1 3 27 27 H 1.08997 * 109.49015 * 307.21173 * 4 3 2 28 28 H 1.09003 * 109.49262 * 67.25992 * 4 3 2 29 29 H 1.08998 * 109.55364 * 186.61055 * 5 4 3 30 30 H 1.08999 * 109.45392 * 66.18116 * 5 4 3 31 31 H 0.97000 * 119.99817 * 179.97438 * 13 12 10 32 32 H 1.08999 * 109.62866 * 68.80172 * 18 6 5 33 33 H 1.09004 * 109.62663 * 189.18481 * 18 6 5 34 34 H 1.09002 * 109.46916 * 172.60193 * 21 19 3 35 35 H 1.09000 * 109.47088 * 292.59949 * 21 19 3 36 36 H 1.09003 * 109.47287 * 52.60747 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7497 2.0389 1.2875 5 6 2.1098 3.5205 1.1902 6 7 3.4946 3.6404 0.7094 7 16 4.5959 4.5785 1.5152 8 8 5.8791 4.0685 1.1800 9 8 4.1279 4.6876 2.8525 10 6 4.5075 6.1967 0.8237 11 1 3.8144 6.4042 0.0218 12 6 5.3188 7.1997 1.3105 13 7 6.1624 6.9472 2.2873 14 14 5.2196 8.9172 0.5826 15 1 3.8450 9.4507 0.7583 16 1 6.1880 9.8050 1.2750 17 1 5.5476 8.8612 -0.8647 18 6 3.8769 2.9000 -0.5026 19 6 3.4489 1.4381 -0.3353 20 1 4.0278 0.9790 0.4660 21 6 3.6951 0.6813 -1.6421 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.6929 1.9354 1.5334 28 1 2.3519 1.5710 2.0663 29 1 2.0223 3.9825 2.1736 30 1 1.4351 4.0128 0.4899 31 1 6.7334 7.6527 2.6295 32 1 3.3754 3.3316 -1.3688 33 1 4.9569 2.9549 -0.6398 34 1 4.7272 0.8306 -1.9594 35 1 3.5132 -0.3820 -1.4860 36 1 3.0205 1.0563 -2.4118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104136182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:07 Heat of formation + Delta-G solvation = -111.452557 kcal Electronic energy + Delta-G solvation = -19091.424948 eV Core-core repulsion = 16121.840799 eV Total energy + Delta-G solvation = -2969.584149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.27512 -37.51383 -36.20023 -36.03756 -35.15895 -33.74716 -31.31272 -28.32621 -28.26832 -26.72983 -23.49015 -22.79660 -20.99726 -20.73644 -19.07366 -18.38577 -17.15532 -16.97439 -16.57604 -16.02523 -15.96397 -15.41620 -15.39592 -15.23292 -14.49613 -13.98841 -13.56298 -13.39807 -13.19468 -13.07127 -13.04867 -12.98470 -12.72268 -12.53858 -12.49792 -12.43976 -12.32726 -12.08885 -11.98059 -11.49503 -11.38135 -11.24836 -11.00613 -9.90462 -9.25453 -8.75328 -7.50612 0.26555 1.33049 1.35636 1.48881 2.19796 2.56142 2.72679 2.91497 3.73239 3.84363 3.89971 3.99886 4.19243 4.25002 4.34233 4.43618 4.49939 4.56242 4.60906 4.66667 4.72870 4.83989 4.91071 4.99625 5.01103 5.08571 5.18142 5.21966 5.30719 5.37127 5.45118 5.88445 5.91628 6.08980 6.20755 6.76037 8.19302 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.035858 B = 0.006058 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.662214 B = 4620.514445 C = 4705.579529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.040 3.960 3 N -0.530 5.530 4 C 0.047 3.953 5 C 0.119 3.881 6 N -1.012 6.012 7 S 2.716 3.284 8 O -1.041 7.041 9 O -1.041 7.041 10 C -1.040 5.040 11 H 0.118 0.882 12 C 0.069 3.931 13 N -0.895 5.895 14 Si 0.992 3.008 15 H -0.250 1.250 16 H -0.263 1.263 17 H -0.250 1.250 18 C 0.126 3.874 19 C 0.068 3.932 20 H 0.023 0.977 21 C -0.138 4.138 22 H 0.073 0.927 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.026 0.974 27 H 0.113 0.887 28 H 0.019 0.981 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.299 0.701 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.475 -10.341 -8.067 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 N -0.256 5.256 4 C -0.083 4.083 5 C -0.006 4.006 6 N -0.850 5.850 7 S 2.819 3.181 8 O -1.031 7.031 9 O -1.031 7.031 10 C -1.174 5.174 11 H 0.136 0.864 12 C -0.144 4.144 13 N -0.527 5.527 14 Si 0.810 3.190 15 H -0.173 1.173 16 H -0.187 1.187 17 H -0.173 1.173 18 C 0.000 4.000 19 C -0.042 4.042 20 H 0.041 0.959 21 C -0.196 4.196 22 H 0.092 0.908 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.113 0.887 26 H 0.044 0.956 27 H 0.131 0.869 28 H 0.037 0.963 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.025 -10.377 -7.574 16.296 hybrid contribution 0.642 0.845 0.502 1.174 sum -9.383 -9.532 -7.073 15.130 Atomic orbital electron populations 1.21747 0.93507 1.02278 1.02333 1.22331 0.97192 0.87731 1.01460 1.62027 1.15422 1.17781 1.30398 1.22397 1.02339 0.93596 0.89953 1.21486 0.81666 0.97276 1.00162 1.57765 1.23324 1.63308 1.40648 1.00030 0.70933 0.74790 0.72300 1.93279 1.42125 1.82475 1.85237 1.93281 1.81908 1.88715 1.39192 1.30951 1.33502 1.18915 1.34031 0.86385 1.26070 0.90147 1.06154 0.92035 1.69989 1.20376 1.38328 1.23989 0.85136 0.79995 0.74254 0.79618 1.17350 1.18662 1.17339 1.21625 1.00206 0.91186 0.86974 1.21972 0.88506 0.95107 0.98608 0.95873 1.21853 1.02786 0.99974 0.94989 0.90833 0.92975 0.91914 0.88725 0.95610 0.86855 0.96293 0.90296 0.89597 0.89065 0.89710 0.90497 0.91326 0.90613 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.93 71.98 0.71 -1.53 16 2 C 0.04 0.79 5.45 86.31 0.47 1.26 16 3 N -0.53 -13.88 4.45 -870.93 -3.87 -17.76 16 4 C 0.05 1.35 5.45 86.23 0.47 1.82 16 5 C 0.12 4.23 6.64 86.20 0.57 4.80 16 6 N -1.01 -42.97 3.34 -512.97 -1.71 -44.68 16 7 S 2.72 151.59 5.03 -56.49 -0.28 151.30 16 8 O -1.04 -63.80 16.63 -128.00 -2.13 -65.93 16 9 O -1.04 -63.74 16.62 -128.00 -2.13 -65.86 16 10 C -1.04 -58.79 9.75 67.74 0.66 -58.13 16 11 H 0.12 6.04 7.81 -2.91 -0.02 6.02 16 12 C 0.07 3.89 5.46 84.66 0.46 4.35 16 13 N -0.90 -54.42 13.19 21.45 0.28 -54.14 16 14 Si 0.99 41.81 29.54 68.60 2.03 43.84 16 15 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 16 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 17 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 18 C 0.13 4.49 5.95 86.35 0.51 5.01 16 19 C 0.07 1.99 2.61 44.99 0.12 2.11 16 20 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 21 C -0.14 -2.88 8.50 71.98 0.61 -2.27 16 22 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.05 0.85 6.55 -2.39 -0.02 0.84 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.09 1.60 5.60 -2.39 -0.01 1.58 16 26 H 0.03 0.54 8.08 -2.39 -0.02 0.52 16 27 H 0.11 2.58 6.36 -2.39 -0.02 2.57 16 28 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 3.03 6.93 -2.39 -0.02 3.01 16 30 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.30 16.32 8.31 -92.71 -0.77 15.55 16 32 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.08 3.00 6.93 -2.38 -0.02 2.98 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.29 6.48 -2.39 -0.02 1.27 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -75.91 298.01 -2.16 -78.07 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 1.06 Total: 17.73 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 4.59 Total: -42.58 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -5.30 Total: -116.58 kcal Atomic # 8 Polarization: -127.53 SS G_CDS: -4.26 Total: -131.79 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 151.59 SS G_CDS: -0.28 Total: 151.30 kcal Total: -75.91 -2.16 -78.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104136182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.381 kcal (2) G-P(sol) polarization free energy of solvation -75.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds