Wall clock time and date at job start Mon Mar 30 2020 04:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47337 * 2 1 4 4 H 1.08997 * 109.49187 * 305.04061 * 3 2 1 5 5 C 1.53245 * 109.49036 * 65.09283 * 3 2 1 6 6 N 1.47072 * 108.51921 * 173.81815 * 5 3 2 7 7 S 1.65604 * 120.88249 * 128.83577 * 6 5 3 8 8 O 1.42100 * 106.40410 * 203.53525 * 7 6 5 9 9 O 1.42096 * 106.40169 * 336.46079 * 7 6 5 10 10 C 1.76202 * 107.21663 * 89.99700 * 7 6 5 11 11 H 1.08006 * 120.00055 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00062 * 179.97438 * 10 7 6 13 13 N 1.31517 * 119.99863 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 120.00377 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47280 * 90.00159 * 14 12 10 16 16 H 1.48496 * 109.47297 * 210.00386 * 14 12 10 17 17 H 1.48506 * 109.46732 * 330.00289 * 14 12 10 18 18 C 1.47084 * 118.23633 * 308.81174 * 6 5 3 19 19 C 1.53236 * 108.51984 * 51.18720 * 18 6 5 20 20 N 1.46892 * 109.51372 * 184.96856 * 3 2 1 21 21 C 1.46903 * 110.99902 * 52.77951 * 20 3 2 22 22 H 1.08998 * 109.46770 * 54.39732 * 1 2 3 23 23 H 1.08996 * 109.47094 * 174.40206 * 1 2 3 24 24 H 1.08998 * 109.46612 * 294.40301 * 1 2 3 25 25 H 1.09006 * 109.46780 * 240.00235 * 2 1 3 26 26 H 1.08999 * 109.47420 * 120.00445 * 2 1 3 27 27 H 1.09007 * 109.62486 * 293.52487 * 5 3 2 28 28 H 1.08998 * 109.62918 * 54.10603 * 5 3 2 29 29 H 0.97005 * 119.99846 * 179.97438 * 13 12 10 30 30 H 1.08993 * 109.62784 * 291.47869 * 18 6 5 31 31 H 1.09002 * 109.62719 * 170.89636 * 18 6 5 32 32 H 1.08997 * 109.49279 * 186.20628 * 19 18 6 33 33 H 1.09005 * 109.51481 * 66.14466 * 19 18 6 34 34 H 1.08995 * 109.47267 * 53.32671 * 21 20 3 35 35 H 1.09001 * 109.46903 * 173.32641 * 21 20 3 36 36 H 1.08997 * 109.46983 * 293.32079 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9821 -0.8413 5 6 1.6370 2.1274 1.3103 6 7 2.2619 3.4580 1.3534 7 16 1.3610 4.8102 1.6736 8 8 2.0723 5.9073 1.1171 9 8 0.0216 4.4928 1.3207 10 6 1.3734 5.0436 3.4200 11 1 1.9122 4.3542 4.0532 12 6 0.6961 6.1069 3.9782 13 7 0.0403 6.9466 3.2072 14 14 0.7097 6.3548 5.8296 15 1 1.8622 7.2125 6.2057 16 1 -0.5540 7.0113 6.2505 17 1 0.8319 5.0376 6.5045 18 6 3.7083 3.5559 1.1050 19 6 4.0298 2.8148 -0.1970 20 7 3.5041 1.4453 -0.1199 21 6 3.9392 0.6486 -1.2749 22 1 -0.3633 0.5983 -0.8356 23 1 -0.3633 -1.0227 -0.1002 24 1 -0.3632 0.4246 0.9359 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 0.5525 2.2306 1.3508 28 1 1.9829 1.5328 2.1558 29 1 -0.4365 7.6945 3.6000 30 1 4.2533 3.0986 1.9308 31 1 3.9934 4.6037 1.0100 32 1 5.1099 2.7823 -0.3399 33 1 3.5676 3.3352 -1.0359 34 1 3.4210 0.9929 -2.1698 35 1 5.0146 0.7632 -1.4110 36 1 3.7050 -0.4016 -1.1008 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110751995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:18 Heat of formation + Delta-G solvation = -86.647443 kcal Electronic energy + Delta-G solvation = -19188.748455 eV Core-core repulsion = 16220.239936 eV Total energy + Delta-G solvation = -2968.508519 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.02700 -35.31511 -34.36346 -33.94373 -33.58142 -33.02825 -29.30279 -27.47183 -26.08513 -24.40930 -23.49359 -21.35002 -19.69148 -18.71792 -17.29908 -16.34332 -15.56802 -15.34165 -15.03136 -14.48865 -14.33775 -14.17835 -13.78906 -13.46867 -13.22721 -12.84756 -12.32513 -12.04829 -11.89823 -11.69849 -11.46609 -11.36701 -11.21059 -11.07345 -10.89456 -10.64903 -10.58778 -10.56581 -10.27851 -10.03329 -9.87111 -9.23228 -8.91835 -8.39268 -7.97594 -6.67844 -5.29838 2.27603 3.08004 3.14538 3.21520 3.98724 4.08503 4.52435 4.65425 4.99937 5.05371 5.18599 5.38280 5.42778 5.49898 5.53659 5.61890 5.71798 5.77097 5.82946 5.88815 5.93582 6.05238 6.06256 6.09331 6.22315 6.31238 6.39960 6.44982 6.50111 6.78467 7.22702 7.24280 7.34970 7.60025 8.00568 8.91006 10.25537 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029603 B = 0.006765 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.611049 B = 4137.771330 C = 4440.651373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C 0.072 3.928 4 H 0.045 0.955 5 C 0.133 3.867 6 N -1.015 6.015 7 S 2.715 3.285 8 O -1.005 7.005 9 O -1.004 7.004 10 C -1.019 5.019 11 H 0.102 0.898 12 C 0.132 3.868 13 N -0.847 5.847 14 Si 0.920 3.080 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.262 1.262 18 C 0.127 3.873 19 C 0.044 3.956 20 N -0.537 5.537 21 C 0.023 3.977 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.290 0.710 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.022 0.978 35 H 0.064 0.936 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.553 -11.837 -4.721 13.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.038 4.038 4 H 0.063 0.937 5 C 0.007 3.993 6 N -0.850 5.850 7 S 2.816 3.184 8 O -0.995 6.995 9 O -0.994 6.994 10 C -1.153 5.153 11 H 0.121 0.879 12 C -0.085 4.085 13 N -0.477 5.477 14 Si 0.744 3.256 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.186 1.186 18 C 0.001 3.999 19 C -0.085 4.085 20 N -0.262 5.262 21 C -0.125 4.125 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.203 -11.347 -5.005 13.449 hybrid contribution -0.103 0.379 0.784 0.877 sum 5.100 -10.967 -4.220 12.811 Atomic orbital electron populations 1.21831 0.95292 1.01426 1.02875 1.21619 0.95959 0.95436 1.02488 1.22105 0.87058 0.96159 0.98509 0.93733 1.21397 0.98506 0.83519 0.95897 1.58239 1.17351 1.21705 1.87664 1.00487 0.71516 0.69885 0.76493 1.93341 1.74335 1.50786 1.81059 1.93340 1.36355 1.83649 1.86103 1.30635 1.44786 1.21050 1.18791 0.87941 1.24761 0.90130 0.92373 1.01269 1.69902 1.26768 1.13301 1.37733 0.86170 0.78426 0.79319 0.81688 1.19179 1.19976 1.18636 1.21324 0.81603 1.01067 0.95919 1.22489 0.99651 0.88301 0.98106 1.61906 1.10443 1.12926 1.40939 1.22402 1.00254 0.98559 0.91266 0.92610 0.92728 0.91776 0.91838 0.90995 0.88576 0.91684 0.89921 0.91614 0.88613 0.90117 0.94557 0.95923 0.91754 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.54 37.16 0.35 -1.49 16 2 C -0.12 -1.41 5.10 -26.73 -0.14 -1.55 16 3 C 0.07 1.09 2.05 -67.59 -0.14 0.96 16 4 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 5 C 0.13 2.42 5.54 -3.60 -0.02 2.40 16 6 N -1.01 -21.28 3.33 -113.24 -0.38 -21.66 16 7 S 2.71 73.08 5.02 -107.50 -0.54 72.54 16 8 O -1.00 -29.44 16.63 -57.17 -0.95 -30.39 16 9 O -1.00 -29.35 16.63 -57.17 -0.95 -30.30 16 10 C -1.02 -28.45 9.75 30.60 0.30 -28.15 16 11 H 0.10 2.65 7.81 -52.48 -0.41 2.24 16 12 C 0.13 3.73 5.46 -17.82 -0.10 3.64 16 13 N -0.85 -25.15 13.19 55.43 0.73 -24.42 16 14 Si 0.92 20.78 29.54 -169.99 -5.02 15.75 16 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 17 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 18 C 0.13 2.27 6.66 -3.60 -0.02 2.25 16 19 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 20 N -0.54 -7.67 4.73 -234.59 -1.11 -8.78 16 21 C 0.02 0.26 8.84 60.07 0.53 0.79 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.81 7.01 -51.93 -0.36 0.45 16 25 H 0.06 0.67 6.18 -51.93 -0.32 0.35 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.10 1.84 5.83 -51.92 -0.30 1.54 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.29 7.74 8.31 -40.82 -0.34 7.40 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.10 1.78 6.93 -51.93 -0.36 1.42 16 32 H 0.08 0.99 7.98 -51.93 -0.41 0.57 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.02 0.25 8.12 -51.93 -0.42 -0.17 16 35 H 0.06 0.63 7.95 -51.93 -0.41 0.22 16 36 H 0.07 0.69 6.52 -51.93 -0.34 0.35 16 LS Contribution 298.58 15.07 4.50 4.50 Total: -1.00 -34.19 298.58 -8.41 -42.61 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.44 Total: 0.67 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 0.75 Total: -20.52 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.76 Total: -54.86 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: -1.90 Total: -60.69 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 73.08 SS G_CDS: -0.54 Total: 72.54 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.19 -8.41 -42.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110751995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.042 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds