Wall clock time and date at job start Mon Mar 30 2020 04:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47337 * 2 1 4 4 H 1.08997 * 109.49187 * 305.04061 * 3 2 1 5 5 C 1.53245 * 109.49036 * 65.09283 * 3 2 1 6 6 N 1.47072 * 108.51921 * 173.81815 * 5 3 2 7 7 S 1.65604 * 120.88249 * 128.83577 * 6 5 3 8 8 O 1.42100 * 106.40410 * 203.53525 * 7 6 5 9 9 O 1.42096 * 106.40169 * 336.46079 * 7 6 5 10 10 C 1.76202 * 107.21663 * 89.99700 * 7 6 5 11 11 H 1.08006 * 120.00055 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00062 * 179.97438 * 10 7 6 13 13 N 1.31517 * 119.99863 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 120.00377 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47280 * 90.00159 * 14 12 10 16 16 H 1.48496 * 109.47297 * 210.00386 * 14 12 10 17 17 H 1.48506 * 109.46732 * 330.00289 * 14 12 10 18 18 C 1.47084 * 118.23633 * 308.81174 * 6 5 3 19 19 C 1.53236 * 108.51984 * 51.18720 * 18 6 5 20 20 N 1.46892 * 109.51372 * 184.96856 * 3 2 1 21 21 C 1.46903 * 110.99902 * 52.77951 * 20 3 2 22 22 H 1.08998 * 109.46770 * 54.39732 * 1 2 3 23 23 H 1.08996 * 109.47094 * 174.40206 * 1 2 3 24 24 H 1.08998 * 109.46612 * 294.40301 * 1 2 3 25 25 H 1.09006 * 109.46780 * 240.00235 * 2 1 3 26 26 H 1.08999 * 109.47420 * 120.00445 * 2 1 3 27 27 H 1.09007 * 109.62486 * 293.52487 * 5 3 2 28 28 H 1.08998 * 109.62918 * 54.10603 * 5 3 2 29 29 H 0.97005 * 119.99846 * 179.97438 * 13 12 10 30 30 H 1.08993 * 109.62784 * 291.47869 * 18 6 5 31 31 H 1.09002 * 109.62719 * 170.89636 * 18 6 5 32 32 H 1.08997 * 109.49279 * 186.20628 * 19 18 6 33 33 H 1.09005 * 109.51481 * 66.14466 * 19 18 6 34 34 H 1.08995 * 109.47267 * 53.32671 * 21 20 3 35 35 H 1.09001 * 109.46903 * 173.32641 * 21 20 3 36 36 H 1.08997 * 109.46983 * 293.32079 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9821 -0.8413 5 6 1.6370 2.1274 1.3103 6 7 2.2619 3.4580 1.3534 7 16 1.3610 4.8102 1.6736 8 8 2.0723 5.9073 1.1171 9 8 0.0216 4.4928 1.3207 10 6 1.3734 5.0436 3.4200 11 1 1.9122 4.3542 4.0532 12 6 0.6961 6.1069 3.9782 13 7 0.0403 6.9466 3.2072 14 14 0.7097 6.3548 5.8296 15 1 1.8622 7.2125 6.2057 16 1 -0.5540 7.0113 6.2505 17 1 0.8319 5.0376 6.5045 18 6 3.7083 3.5559 1.1050 19 6 4.0298 2.8148 -0.1970 20 7 3.5041 1.4453 -0.1199 21 6 3.9392 0.6486 -1.2749 22 1 -0.3633 0.5983 -0.8356 23 1 -0.3633 -1.0227 -0.1002 24 1 -0.3632 0.4246 0.9359 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 0.5525 2.2306 1.3508 28 1 1.9829 1.5328 2.1558 29 1 -0.4365 7.6945 3.6000 30 1 4.2533 3.0986 1.9308 31 1 3.9934 4.6037 1.0100 32 1 5.1099 2.7823 -0.3399 33 1 3.5676 3.3352 -1.0359 34 1 3.4210 0.9929 -2.1698 35 1 5.0146 0.7632 -1.4110 36 1 3.7050 -0.4016 -1.1008 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110751995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:17 Heat of formation + Delta-G solvation = -114.237629 kcal Electronic energy + Delta-G solvation = -19189.944855 eV Core-core repulsion = 16220.239936 eV Total energy + Delta-G solvation = -2969.704919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.26871 -37.51430 -36.18085 -35.78438 -35.14913 -34.70172 -30.53786 -28.68552 -28.23083 -25.60415 -24.72113 -22.58636 -20.97288 -20.74961 -19.08605 -18.39288 -17.13319 -16.99074 -16.44845 -16.00193 -15.87927 -15.54393 -15.42315 -14.96049 -14.55144 -14.00321 -13.96818 -13.48381 -13.43004 -13.03358 -13.00485 -12.94785 -12.65943 -12.58337 -12.53284 -12.48414 -12.31493 -12.02468 -11.83268 -11.63374 -11.26852 -11.26429 -10.99906 -9.90358 -9.26266 -8.75926 -7.50954 0.26762 1.32390 1.33187 1.49658 2.19223 2.55457 2.73875 2.93056 3.72041 3.83479 3.85457 4.04581 4.19345 4.23324 4.31633 4.42867 4.45841 4.57691 4.63064 4.68795 4.73435 4.79553 4.86610 4.94793 5.05327 5.08353 5.14618 5.18645 5.29937 5.32373 5.44651 5.88248 5.91680 6.06088 6.16129 6.75764 8.18897 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029603 B = 0.006765 C = 0.006304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.611049 B = 4137.771330 C = 4440.651373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.107 4.107 3 C 0.074 3.926 4 H 0.023 0.977 5 C 0.126 3.874 6 N -1.012 6.012 7 S 2.716 3.284 8 O -1.040 7.040 9 O -1.040 7.040 10 C -1.040 5.040 11 H 0.118 0.882 12 C 0.069 3.931 13 N -0.896 5.896 14 Si 0.991 3.009 15 H -0.253 1.253 16 H -0.261 1.261 17 H -0.248 1.248 18 C 0.118 3.882 19 C 0.047 3.953 20 N -0.538 5.538 21 C 0.022 3.978 22 H 0.044 0.956 23 H 0.079 0.921 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.299 0.701 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.082 0.918 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.997 -13.963 -3.804 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.146 4.146 3 C -0.036 4.036 4 H 0.041 0.959 5 C 0.000 4.000 6 N -0.851 5.851 7 S 2.819 3.181 8 O -1.030 7.030 9 O -1.030 7.030 10 C -1.174 5.174 11 H 0.136 0.864 12 C -0.144 4.144 13 N -0.527 5.527 14 Si 0.809 3.191 15 H -0.177 1.177 16 H -0.185 1.185 17 H -0.171 1.171 18 C -0.008 4.008 19 C -0.082 4.082 20 N -0.263 5.263 21 C -0.125 4.125 22 H 0.063 0.937 23 H 0.098 0.902 24 H 0.067 0.933 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.038 0.962 34 H 0.039 0.961 35 H 0.101 0.899 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.653 -13.485 -4.117 15.590 hybrid contribution -0.508 0.980 0.427 1.184 sum 6.144 -12.505 -3.690 14.413 Atomic orbital electron populations 1.21853 0.95451 1.02662 1.01634 1.21591 0.95753 0.93170 1.04048 1.22060 0.88128 0.97680 0.95756 0.95915 1.21645 0.97487 0.82318 0.98545 1.57780 1.18521 1.21208 1.87569 1.00045 0.71098 0.70474 0.76469 1.93281 1.74801 1.53342 1.81618 1.93280 1.38763 1.84428 1.86531 1.30981 1.45121 1.21736 1.19525 0.86428 1.26060 0.89222 0.91743 1.07356 1.69995 1.27952 1.14334 1.40436 0.85121 0.79454 0.80190 0.74358 1.17689 1.18527 1.17102 1.21611 0.79576 1.01069 0.98495 1.22480 1.01651 0.88496 0.95583 1.61935 1.09300 1.12401 1.42686 1.22525 1.01356 0.98835 0.89823 0.93670 0.90209 0.93305 0.89593 0.89923 0.90492 0.89903 0.89069 0.89526 0.90185 0.86593 0.96155 0.96095 0.89885 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.54 71.98 0.69 -2.86 16 2 C -0.11 -2.34 5.10 30.60 0.16 -2.18 16 3 C 0.07 2.19 2.05 45.00 0.09 2.28 16 4 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 5 C 0.13 4.55 5.54 86.35 0.48 5.03 16 6 N -1.01 -43.07 3.33 -512.17 -1.71 -44.77 16 7 S 2.72 151.58 5.02 -56.49 -0.28 151.30 16 8 O -1.04 -63.59 16.63 -128.00 -2.13 -65.72 16 9 O -1.04 -63.68 16.63 -128.00 -2.13 -65.81 16 10 C -1.04 -58.86 9.75 67.73 0.66 -58.20 16 11 H 0.12 6.05 7.81 -2.91 -0.02 6.03 16 12 C 0.07 3.90 5.46 84.65 0.46 4.36 16 13 N -0.90 -54.48 13.19 21.45 0.28 -54.20 16 14 Si 0.99 41.89 29.54 68.60 2.03 43.91 16 15 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 16 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 17 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 18 C 0.12 4.14 6.66 86.35 0.58 4.72 16 19 C 0.05 1.35 5.62 86.38 0.49 1.83 16 20 N -0.54 -14.03 4.73 -896.11 -4.24 -18.27 16 21 C 0.02 0.41 8.84 127.69 1.13 1.54 16 22 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.05 1.23 7.01 -2.39 -0.02 1.21 16 25 H 0.09 1.52 6.18 -2.38 -0.01 1.50 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.08 3.06 5.83 -2.38 -0.01 3.05 16 28 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.30 16.28 8.31 -92.70 -0.77 15.51 16 30 H 0.09 2.66 8.14 -2.39 -0.02 2.65 16 31 H 0.08 3.04 6.93 -2.39 -0.02 3.02 16 32 H 0.12 2.48 7.98 -2.39 -0.02 2.46 16 33 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.02 0.41 8.12 -2.39 -0.02 0.39 16 35 H 0.08 1.28 7.95 -2.39 -0.02 1.26 16 36 H 0.09 1.36 6.52 -2.39 -0.02 1.34 16 Total: -1.00 -76.20 298.58 -2.39 -78.59 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 1.06 Total: 18.44 kcal Atomic # 6 Polarization: -48.20 SS G_CDS: 4.72 Total: -43.48 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -5.66 Total: -117.24 kcal Atomic # 8 Polarization: -127.27 SS G_CDS: -4.26 Total: -131.53 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 151.58 SS G_CDS: -0.28 Total: 151.30 kcal Total: -76.20 -2.39 -78.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110751995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.643 kcal (2) G-P(sol) polarization free energy of solvation -76.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds