Wall clock time and date at job start Mon Mar 30 2020 05:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.46981 * 2 1 4 4 C 1.50698 * 109.47134 * 240.00404 * 2 1 3 5 5 H 1.08003 * 120.00023 * 268.26120 * 4 2 1 6 6 C 1.37874 * 120.00099 * 88.26128 * 4 2 1 7 7 N 1.31516 * 120.00008 * 353.45981 * 6 4 2 8 8 Si 1.86805 * 120.00261 * 173.45824 * 6 4 2 9 9 H 1.48501 * 109.46967 * 59.99910 * 8 6 4 10 10 H 1.48504 * 109.46762 * 300.00235 * 8 6 4 11 11 H 1.48493 * 109.47198 * 180.02562 * 8 6 4 12 12 N 1.46896 * 109.46791 * 120.00378 * 2 1 3 13 13 C 1.48537 * 110.99580 * 177.60262 * 12 2 1 14 14 C 1.54938 * 103.22377 * 159.72094 * 13 12 2 15 15 C 1.54590 * 102.92406 * 322.58751 * 14 13 12 16 16 H 1.09000 * 110.39097 * 262.99996 * 15 14 13 17 17 N 1.46495 * 110.31366 * 140.87411 * 15 14 13 18 18 S 1.65602 * 120.00146 * 99.27893 * 17 15 14 19 19 C 1.81403 * 104.44830 * 65.00549 * 18 17 15 20 20 O 1.42102 * 104.28026 * 181.07357 * 18 17 15 21 21 O 1.42098 * 104.28172 * 308.93430 * 18 17 15 22 22 C 1.47898 * 111.00267 * 294.99941 * 12 2 1 23 23 H 1.09005 * 109.46817 * 66.59437 * 1 2 3 24 24 H 1.09001 * 109.46910 * 186.59107 * 1 2 3 25 25 H 1.08997 * 109.47056 * 306.59054 * 1 2 3 26 26 H 0.96996 * 120.00204 * 354.88082 * 7 6 4 27 27 H 1.09002 * 110.66904 * 278.15337 * 13 12 2 28 28 H 1.09000 * 110.66797 * 41.29026 * 13 12 2 29 29 H 1.09005 * 110.72374 * 204.22287 * 14 13 12 30 30 H 1.08998 * 110.87955 * 81.01546 * 14 13 12 31 31 H 0.97001 * 120.00312 * 279.28561 * 17 15 14 32 32 H 1.09005 * 109.47033 * 59.99871 * 19 18 17 33 33 H 1.08997 * 109.47349 * 179.97438 * 19 18 17 34 34 H 1.09003 * 109.47076 * 300.00131 * 19 18 17 35 35 H 1.09003 * 109.91464 * 333.50851 * 22 12 2 36 36 H 1.08992 * 109.91728 * 94.80523 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.2391 -1.7698 -1.1958 6 6 2.2280 -0.0077 -2.4005 7 7 1.8562 1.2512 -2.4816 8 14 3.0212 -0.8438 -3.8707 9 1 2.1949 -2.0063 -4.2843 10 1 4.3816 -1.3101 -3.5004 11 1 3.1181 0.1205 -4.9958 12 7 2.0196 -0.6926 1.1994 13 6 3.5033 -0.7628 1.2050 14 6 3.8407 -1.0124 2.6965 15 6 2.7914 -0.1519 3.4370 16 1 3.2187 0.8114 3.7159 17 7 2.3050 -0.8550 4.6266 18 16 2.9204 -0.4822 6.1182 19 6 2.4016 1.2320 6.4064 20 8 2.2457 -1.3632 7.0059 21 8 4.3288 -0.5544 5.9444 22 6 1.6461 0.0439 2.4263 23 1 -0.3633 0.4083 -0.9432 24 1 -0.3633 -1.0209 0.1180 25 1 -0.3633 0.6126 0.8251 26 1 1.3779 1.6640 -1.7456 27 1 3.8516 -1.5911 0.5880 28 1 3.9343 0.1790 0.8655 29 1 4.8504 -0.6717 2.9258 30 1 3.7238 -2.0660 2.9502 31 1 1.6226 -1.5389 4.5407 32 1 1.3132 1.2900 6.3890 33 1 2.7673 1.5638 7.3780 34 1 2.8120 1.8720 5.6253 35 1 1.5266 1.1038 2.2013 36 1 0.7188 -0.3589 2.8334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116887532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:16 Heat of formation + Delta-G solvation = -69.449615 kcal Electronic energy + Delta-G solvation = -18592.081849 eV Core-core repulsion = 15624.319084 eV Total energy + Delta-G solvation = -2967.762765 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.78849 -37.17537 -36.05247 -35.15120 -32.94480 -30.67718 -29.70303 -27.96434 -27.29746 -24.61316 -21.81175 -20.64120 -19.75181 -19.63922 -17.88916 -16.84893 -16.53445 -16.25822 -15.37234 -14.88131 -14.35306 -13.74045 -13.56790 -13.46593 -13.38516 -12.92715 -12.61696 -12.36269 -12.22447 -12.11749 -11.91917 -11.66442 -11.29626 -11.20913 -11.02234 -10.92077 -10.70339 -10.47854 -10.23545 -10.21072 -10.09256 -9.40914 -8.62615 -8.36025 -7.46328 -6.40480 -4.12065 0.13566 2.61025 3.42743 3.43141 3.62223 3.65606 4.04697 4.47588 4.50703 4.62133 4.77383 4.92179 5.05369 5.19507 5.33681 5.40304 5.45890 5.78986 5.84512 6.10039 6.24480 6.30262 6.43644 6.56081 6.64746 6.69025 6.82295 6.96328 6.97909 7.30868 7.70385 7.94339 8.27586 8.54694 8.82051 9.60021 10.96712 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.043265 B = 0.004633 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.021387 B = 6042.791220 C = 6309.758296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.185 3.815 3 H 0.006 0.994 4 C -0.583 4.583 5 H 0.056 0.944 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 1.066 2.934 9 H -0.288 1.288 10 H -0.288 1.288 11 H -0.284 1.284 12 N -0.507 5.507 13 C 0.059 3.941 14 C -0.138 4.138 15 C 0.142 3.858 16 H 0.083 0.917 17 N -1.106 6.106 18 S 2.614 3.386 19 C -0.676 4.676 20 O -0.965 6.965 21 O -0.955 6.955 22 C 0.028 3.972 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.014 0.986 26 H 0.268 0.732 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.420 0.580 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.043 0.957 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 0.505 15.030 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.079 3.921 3 H 0.024 0.976 4 C -0.622 4.622 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.549 5.549 8 Si 0.895 3.105 9 H -0.214 1.214 10 H -0.214 1.214 11 H -0.209 1.209 12 N -0.233 5.233 13 C -0.070 4.070 14 C -0.178 4.178 15 C 0.034 3.966 16 H 0.101 0.899 17 N -0.866 5.866 18 S 2.705 3.295 19 C -0.825 4.825 20 O -0.955 6.955 21 O -0.945 6.945 22 C -0.102 4.102 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.256 0.744 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.061 0.939 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.761 -0.147 14.043 14.154 hybrid contribution -0.992 1.032 1.296 1.931 sum 0.768 0.885 15.339 15.384 Atomic orbital electron populations 1.21878 0.98473 0.99639 0.98721 1.19651 0.91682 0.92657 0.88152 0.97640 1.21826 1.48055 0.97036 0.95262 0.92556 1.25814 0.96105 0.95667 1.00808 1.70806 1.36605 1.12438 1.35017 0.83580 0.76243 0.75108 0.75610 1.21398 1.21403 1.20914 1.64912 1.09086 1.47792 1.01490 1.22892 0.89210 1.01182 0.93688 1.23037 0.97917 1.00833 0.95981 1.21708 0.95270 0.94290 0.85309 0.89916 1.55639 1.57151 1.51701 1.22113 1.04711 0.74740 0.76969 0.73103 1.30565 1.13195 1.27210 1.11569 1.93607 1.76019 1.61685 1.64238 1.93626 1.29846 1.86110 1.84938 1.23169 0.97225 0.97464 0.92345 0.93148 0.93551 0.96662 0.92075 0.89866 0.94194 0.90865 0.90287 0.74428 0.85244 0.85591 0.85462 0.93895 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.92 37.16 0.33 -2.52 16 2 C 0.19 4.40 1.40 -68.87 -0.10 4.31 16 3 H 0.01 0.15 6.79 -51.93 -0.35 -0.20 16 4 C -0.58 -15.57 7.47 -34.44 -0.26 -15.82 16 5 H 0.06 1.54 7.82 -52.48 -0.41 1.13 16 6 C 0.02 0.56 5.45 -17.82 -0.10 0.46 16 7 N -0.91 -26.48 13.56 55.43 0.75 -25.73 16 8 Si 1.07 24.47 29.91 -169.99 -5.08 19.39 16 9 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.51 -10.21 5.10 -223.89 -1.14 -11.36 16 13 C 0.06 1.11 5.71 -1.90 -0.01 1.10 16 14 C -0.14 -2.08 6.78 -24.87 -0.17 -2.25 16 15 C 0.14 1.86 3.43 -66.58 -0.23 1.63 16 16 H 0.08 0.90 7.26 -51.93 -0.38 0.52 16 17 N -1.11 -12.04 5.32 -3.74 -0.02 -12.06 16 18 S 2.61 26.73 6.02 -107.50 -0.65 26.08 16 19 C -0.68 -4.53 10.79 101.05 1.09 -3.43 16 20 O -0.97 -12.80 18.08 -57.54 -1.04 -13.85 16 21 O -0.96 -13.20 17.82 -57.54 -1.03 -14.22 16 22 C 0.03 0.45 5.44 -2.76 -0.01 0.43 16 23 H 0.05 1.19 7.81 -51.93 -0.41 0.79 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 26 H 0.27 7.73 6.46 -40.82 -0.26 7.47 16 27 H 0.08 1.67 7.95 -51.93 -0.41 1.26 16 28 H 0.04 0.80 8.02 -51.93 -0.42 0.38 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.19 8.06 -51.93 -0.42 0.77 16 31 H 0.42 4.27 8.66 -34.47 -0.30 3.98 16 32 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.13 0.77 7.50 -51.92 -0.39 0.38 16 35 H 0.04 0.69 7.65 -51.93 -0.40 0.29 16 36 H 0.08 1.12 7.78 -51.93 -0.40 0.71 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -33.71 304.39 -8.50 -42.20 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.43 Total: 1.04 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 0.55 Total: -16.10 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.41 Total: -49.14 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -2.07 Total: -28.07 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -5.08 Total: 19.39 kcal Atomic # 16 Polarization: 26.73 SS G_CDS: -0.65 Total: 26.08 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.71 -8.50 -42.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116887532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.246 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds