Wall clock time and date at job start Mon Mar 30 2020 05:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.46981 * 2 1 4 4 C 1.50698 * 109.47134 * 240.00404 * 2 1 3 5 5 H 1.08003 * 120.00023 * 268.26120 * 4 2 1 6 6 C 1.37874 * 120.00099 * 88.26128 * 4 2 1 7 7 N 1.31516 * 120.00008 * 353.45981 * 6 4 2 8 8 Si 1.86805 * 120.00261 * 173.45824 * 6 4 2 9 9 H 1.48501 * 109.46967 * 59.99910 * 8 6 4 10 10 H 1.48504 * 109.46762 * 300.00235 * 8 6 4 11 11 H 1.48493 * 109.47198 * 180.02562 * 8 6 4 12 12 N 1.46896 * 109.46791 * 120.00378 * 2 1 3 13 13 C 1.48537 * 110.99580 * 177.60262 * 12 2 1 14 14 C 1.54938 * 103.22377 * 159.72094 * 13 12 2 15 15 C 1.54590 * 102.92406 * 322.58751 * 14 13 12 16 16 H 1.09000 * 110.39097 * 262.99996 * 15 14 13 17 17 N 1.46495 * 110.31366 * 140.87411 * 15 14 13 18 18 S 1.65602 * 120.00146 * 99.27893 * 17 15 14 19 19 C 1.81403 * 104.44830 * 65.00549 * 18 17 15 20 20 O 1.42102 * 104.28026 * 181.07357 * 18 17 15 21 21 O 1.42098 * 104.28172 * 308.93430 * 18 17 15 22 22 C 1.47898 * 111.00267 * 294.99941 * 12 2 1 23 23 H 1.09005 * 109.46817 * 66.59437 * 1 2 3 24 24 H 1.09001 * 109.46910 * 186.59107 * 1 2 3 25 25 H 1.08997 * 109.47056 * 306.59054 * 1 2 3 26 26 H 0.96996 * 120.00204 * 354.88082 * 7 6 4 27 27 H 1.09002 * 110.66904 * 278.15337 * 13 12 2 28 28 H 1.09000 * 110.66797 * 41.29026 * 13 12 2 29 29 H 1.09005 * 110.72374 * 204.22287 * 14 13 12 30 30 H 1.08998 * 110.87955 * 81.01546 * 14 13 12 31 31 H 0.97001 * 120.00312 * 279.28561 * 17 15 14 32 32 H 1.09005 * 109.47033 * 59.99871 * 19 18 17 33 33 H 1.08997 * 109.47349 * 179.97438 * 19 18 17 34 34 H 1.09003 * 109.47076 * 300.00131 * 19 18 17 35 35 H 1.09003 * 109.91464 * 333.50851 * 22 12 2 36 36 H 1.08992 * 109.91728 * 94.80523 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.2391 -1.7698 -1.1958 6 6 2.2280 -0.0077 -2.4005 7 7 1.8562 1.2512 -2.4816 8 14 3.0212 -0.8438 -3.8707 9 1 2.1949 -2.0063 -4.2843 10 1 4.3816 -1.3101 -3.5004 11 1 3.1181 0.1205 -4.9958 12 7 2.0196 -0.6926 1.1994 13 6 3.5033 -0.7628 1.2050 14 6 3.8407 -1.0124 2.6965 15 6 2.7914 -0.1519 3.4370 16 1 3.2187 0.8114 3.7159 17 7 2.3050 -0.8550 4.6266 18 16 2.9204 -0.4822 6.1182 19 6 2.4016 1.2320 6.4064 20 8 2.2457 -1.3632 7.0059 21 8 4.3288 -0.5544 5.9444 22 6 1.6461 0.0439 2.4263 23 1 -0.3633 0.4083 -0.9432 24 1 -0.3633 -1.0209 0.1180 25 1 -0.3633 0.6126 0.8251 26 1 1.3779 1.6640 -1.7456 27 1 3.8516 -1.5911 0.5880 28 1 3.9343 0.1790 0.8655 29 1 4.8504 -0.6717 2.9258 30 1 3.7238 -2.0660 2.9502 31 1 1.6226 -1.5389 4.5407 32 1 1.3132 1.2900 6.3890 33 1 2.7673 1.5638 7.3780 34 1 2.8120 1.8720 5.6253 35 1 1.5266 1.1038 2.2013 36 1 0.7188 -0.3589 2.8334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116887532.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:15 Heat of formation + Delta-G solvation = -97.455913 kcal Electronic energy + Delta-G solvation = -18593.296293 eV Core-core repulsion = 15624.319084 eV Total energy + Delta-G solvation = -2968.977209 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.17929 -38.11125 -36.98567 -36.65230 -34.55387 -32.32499 -30.27081 -29.42737 -28.72097 -26.59870 -23.40316 -21.99566 -21.33338 -20.49869 -19.01946 -18.53387 -17.58884 -17.10876 -16.75592 -16.14810 -15.78714 -15.57748 -14.92278 -14.38678 -14.19630 -14.02817 -13.89849 -13.76629 -13.27959 -13.20661 -13.12399 -13.10398 -13.03280 -12.74169 -12.53797 -12.28503 -12.04550 -11.93692 -11.87933 -11.84798 -11.74738 -10.66418 -10.43749 -10.33607 -9.11390 -8.57429 -6.29018 -0.63696 1.55199 1.61247 1.77594 1.80811 2.57916 2.89999 3.15514 3.31339 3.37241 3.62639 3.80947 4.03994 4.06132 4.18356 4.36834 4.45913 4.53798 4.56753 4.78839 4.81218 4.85582 4.94336 4.99126 5.07098 5.17560 5.19843 5.35785 5.51824 5.95213 6.03145 6.10611 6.37938 6.52500 6.75031 7.49972 8.80215 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.043265 B = 0.004633 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.021387 B = 6042.791220 C = 6309.758296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.187 3.813 3 H -0.022 1.022 4 C -0.588 4.588 5 H 0.044 0.956 6 C -0.027 4.027 7 N -0.939 5.939 8 Si 1.108 2.892 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.519 5.519 13 C 0.057 3.943 14 C -0.131 4.131 15 C 0.152 3.848 16 H 0.113 0.887 17 N -1.104 6.104 18 S 2.623 3.377 19 C -0.655 4.655 20 O -0.999 6.999 21 O -0.996 6.996 22 C 0.026 3.974 23 H 0.026 0.974 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.258 0.742 27 H 0.062 0.938 28 H 0.022 0.978 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.423 0.577 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.044 0.956 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.621 0.940 16.600 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 H -0.004 1.004 4 C -0.627 4.627 5 H 0.062 0.938 6 C -0.225 4.225 7 N -0.576 5.576 8 Si 0.931 3.069 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.244 5.244 13 C -0.072 4.072 14 C -0.171 4.171 15 C 0.043 3.957 16 H 0.131 0.869 17 N -0.863 5.863 18 S 2.719 3.281 19 C -0.809 4.809 20 O -0.989 6.989 21 O -0.986 6.986 22 C -0.104 4.104 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.259 0.741 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.161 0.839 35 H 0.062 0.938 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.564 0.227 15.636 15.716 hybrid contribution -0.955 0.923 0.899 1.604 sum 0.608 1.150 16.535 16.587 Atomic orbital electron populations 1.21694 0.97184 1.00034 0.98636 1.19491 0.92607 0.91020 0.88942 1.00401 1.22092 1.47396 0.96552 0.96642 0.93802 1.27050 0.96294 0.95632 1.03541 1.70913 1.38302 1.13459 1.34964 0.83032 0.76387 0.74630 0.72846 1.19920 1.19910 1.21183 1.64780 1.09680 1.48108 1.01800 1.22839 0.88673 0.99437 0.96227 1.22987 0.99388 1.01453 0.93283 1.21561 0.93461 0.95368 0.85294 0.86917 1.55503 1.57033 1.52116 1.21610 1.04243 0.73429 0.78285 0.72096 1.30360 1.14640 1.22456 1.13399 1.93565 1.76291 1.64306 1.64764 1.93577 1.32351 1.87461 1.85201 1.23265 0.99011 0.97089 0.91025 0.95519 0.93455 0.93716 0.93164 0.91962 0.95954 0.89659 0.90329 0.74076 0.83240 0.83448 0.83894 0.93803 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.92 71.98 0.64 -4.50 16 2 C 0.19 8.98 1.40 44.17 0.06 9.04 16 3 H -0.02 -1.14 6.79 -2.39 -0.02 -1.16 16 4 C -0.59 -31.96 7.47 25.60 0.19 -31.77 16 5 H 0.04 2.44 7.82 -2.91 -0.02 2.42 16 6 C -0.03 -1.48 5.45 84.65 0.46 -1.02 16 7 N -0.94 -55.57 13.56 21.45 0.29 -55.28 16 8 Si 1.11 49.58 29.91 68.60 2.05 51.63 16 9 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 12 N -0.52 -20.67 5.10 -862.25 -4.40 -25.07 16 13 C 0.06 2.16 5.71 86.65 0.50 2.66 16 14 C -0.13 -3.80 6.78 31.80 0.22 -3.59 16 15 C 0.15 3.59 3.43 45.87 0.16 3.74 16 16 H 0.11 2.03 7.26 -2.39 -0.02 2.02 16 17 N -1.10 -21.24 5.32 -165.75 -0.88 -22.12 16 18 S 2.62 47.33 6.02 -56.49 -0.34 46.99 16 19 C -0.65 -5.78 10.79 113.37 1.22 -4.56 16 20 O -1.00 -24.88 18.08 -127.65 -2.31 -27.18 16 21 O -1.00 -25.76 17.82 -127.65 -2.27 -28.03 16 22 C 0.03 0.76 5.44 86.45 0.47 1.23 16 23 H 0.03 1.26 7.81 -2.38 -0.02 1.24 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.66 7.57 -2.39 -0.02 1.64 16 26 H 0.26 15.33 6.46 -92.71 -0.60 14.73 16 27 H 0.06 2.57 7.95 -2.39 -0.02 2.55 16 28 H 0.02 0.91 8.02 -2.39 -0.02 0.89 16 29 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.08 2.28 8.06 -2.39 -0.02 2.26 16 31 H 0.42 7.68 8.66 -96.75 -0.84 6.84 16 32 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.14 0.97 7.50 -2.39 -0.02 0.95 16 35 H 0.04 1.32 7.65 -2.39 -0.02 1.30 16 36 H 0.09 2.45 7.78 -2.39 -0.02 2.43 16 Total: -1.00 -74.06 304.39 -3.54 -77.60 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.40 Total: 10.24 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 3.92 Total: -28.76 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -4.99 Total: -102.47 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -4.58 Total: -55.22 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 2.05 Total: 51.63 kcal Atomic # 16 Polarization: 47.33 SS G_CDS: -0.34 Total: 46.99 kcal Total: -74.06 -3.54 -77.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116887532.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.860 kcal (2) G-P(sol) polarization free energy of solvation -74.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds