Wall clock time and date at job start Mon Mar 30 2020 04:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47245 * 2 1 4 4 H 1.08997 * 109.52259 * 55.08379 * 3 2 1 5 5 C 1.53195 * 109.49699 * 295.00064 * 3 2 1 6 6 N 1.46919 * 108.89273 * 185.48402 * 5 3 2 7 7 S 1.65601 * 120.63249 * 233.56084 * 6 5 3 8 8 O 1.42096 * 106.40492 * 203.54197 * 7 6 5 9 9 O 1.42100 * 106.40014 * 336.45576 * 7 6 5 10 10 C 1.76197 * 107.22049 * 89.99584 * 7 6 5 11 11 H 1.08006 * 120.00102 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99917 * 179.97438 * 10 7 6 13 13 N 1.31513 * 120.00282 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99696 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47471 * 59.99965 * 14 12 10 16 16 H 1.48498 * 109.46883 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46878 * 299.99893 * 14 12 10 18 18 C 1.46928 * 118.73982 * 53.53793 * 6 5 3 19 19 C 1.53191 * 108.77343 * 306.39079 * 18 6 5 20 20 C 1.53039 * 109.31416 * 54.63452 * 19 18 6 21 21 H 1.09000 * 109.45893 * 178.62518 * 20 19 18 22 22 N 1.46899 * 109.45455 * 58.65461 * 20 19 18 23 23 H 1.08995 * 109.47269 * 299.99567 * 1 2 3 24 24 H 1.09000 * 109.46873 * 60.00319 * 1 2 3 25 25 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47051 * 239.99844 * 2 1 3 27 27 H 1.09000 * 109.47421 * 120.00214 * 2 1 3 28 28 H 1.09002 * 109.58720 * 65.62433 * 5 3 2 29 29 H 1.08996 * 109.58651 * 305.34329 * 5 3 2 30 30 H 0.96994 * 119.99853 * 179.97438 * 13 12 10 31 31 H 1.08998 * 109.58787 * 66.18123 * 18 6 5 32 32 H 1.09007 * 109.58600 * 186.46436 * 18 6 5 33 33 H 1.09002 * 109.49529 * 174.58688 * 19 18 6 34 34 H 1.09001 * 109.49774 * 294.68244 * 19 18 6 35 35 H 1.00896 * 111.00569 * 60.00370 * 22 20 19 36 36 H 1.00908 * 110.99713 * 183.95104 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9819 0.8424 5 6 1.6350 2.1280 -1.3088 6 7 2.2416 3.4654 -1.3528 7 16 1.3079 4.8070 -1.6183 8 8 2.1754 5.8021 -2.1439 9 8 0.1418 4.3570 -2.2942 10 6 0.7758 5.3921 -0.0438 11 1 1.0776 4.8745 0.8549 12 6 -0.0251 6.5112 0.0412 13 7 -0.3922 7.1418 -1.0530 14 14 -0.5886 7.1318 1.7105 15 1 0.5964 7.4752 2.5370 16 1 -1.4336 8.3396 1.5301 17 1 -1.3773 6.0737 2.3916 18 6 3.6924 3.5900 -1.1563 19 6 4.0744 2.8913 0.1523 20 6 3.5657 1.4482 0.1230 21 1 3.8575 0.9416 1.0429 22 7 4.1495 0.7470 -1.0283 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.5496 2.2173 -1.3539 29 1 1.9885 1.5384 -2.1547 30 1 -0.9559 7.9288 -0.9932 31 1 4.2156 3.1188 -1.9884 32 1 3.9647 4.6441 -1.1033 33 1 5.1589 2.8927 0.2623 34 1 3.6225 3.4193 0.9920 35 1 5.1568 0.7340 -0.9711 36 1 3.7797 -0.1885 -1.1074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122653238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:01 Heat of formation + Delta-G solvation = -104.618311 kcal Electronic energy + Delta-G solvation = -19395.433555 eV Core-core repulsion = 16426.145761 eV Total energy + Delta-G solvation = -2969.287794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.91160 -35.21955 -34.07323 -33.85352 -33.31022 -32.96034 -29.56942 -28.26857 -26.06058 -24.09139 -23.31563 -20.93600 -19.26810 -18.25822 -17.23626 -16.23873 -15.96798 -15.24079 -15.03418 -14.77951 -14.10231 -13.81522 -13.71742 -13.22157 -13.08164 -12.78270 -12.39240 -12.02171 -11.83857 -11.68088 -11.34314 -11.21300 -11.17399 -10.79572 -10.65853 -10.57598 -10.45797 -10.19437 -10.17062 -9.83052 -9.71486 -9.19088 -8.87239 -8.60443 -7.90404 -6.63450 -5.25164 2.38915 3.10475 3.14915 3.20512 4.09880 4.64368 4.64793 4.69437 4.92665 5.00005 5.12672 5.37634 5.47737 5.60775 5.66161 5.81635 5.92992 5.99132 5.99896 6.05352 6.10529 6.14715 6.23514 6.30965 6.37166 6.48011 6.51529 6.68433 6.77047 7.05127 7.27140 7.38973 7.53842 7.76875 8.03723 8.94738 10.29758 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022430 B = 0.008045 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.018625 B = 3479.426662 C = 3773.123976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 C -0.101 4.101 4 H 0.079 0.921 5 C 0.144 3.856 6 N -1.008 6.008 7 S 2.717 3.283 8 O -1.007 7.007 9 O -1.007 7.007 10 C -1.020 5.020 11 H 0.100 0.900 12 C 0.133 3.867 13 N -0.847 5.847 14 Si 0.917 3.083 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.265 1.265 18 C 0.138 3.862 19 C -0.129 4.129 20 C 0.102 3.898 21 H 0.028 0.972 22 N -0.840 5.840 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.290 0.710 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.336 0.664 36 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.488 -12.641 4.582 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.122 4.122 4 H 0.098 0.902 5 C 0.018 3.982 6 N -0.843 5.843 7 S 2.818 3.182 8 O -0.997 6.997 9 O -0.997 6.997 10 C -1.153 5.153 11 H 0.118 0.882 12 C -0.084 4.084 13 N -0.477 5.477 14 Si 0.741 3.259 15 H -0.189 1.189 16 H -0.202 1.202 17 H -0.189 1.189 18 C 0.012 3.988 19 C -0.169 4.169 20 C -0.009 4.009 21 H 0.046 0.954 22 N -0.371 5.371 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.863 -11.554 3.154 13.335 hybrid contribution 0.072 -0.371 2.380 2.410 sum 5.934 -11.925 5.534 14.424 Atomic orbital electron populations 1.21841 0.95550 1.01198 1.02897 1.21527 0.96423 0.96254 1.01271 1.21661 0.94308 0.95917 1.00275 0.90245 1.21104 0.97731 0.83474 0.95935 1.58053 1.16302 1.20626 1.89322 1.00416 0.71606 0.70228 0.75984 1.93342 1.67908 1.57481 1.80978 1.93341 1.48964 1.81479 1.75915 1.30651 1.45063 1.23053 1.16511 0.88188 1.24739 0.91421 0.93478 0.98799 1.69893 1.30640 1.18255 1.28898 0.86255 0.79152 0.78466 0.81983 1.18928 1.20153 1.18930 1.21020 0.81214 1.00424 0.96176 1.21965 0.99972 0.95136 0.99789 1.21240 0.94508 0.94511 0.90636 0.95389 1.58721 1.10507 1.22582 1.45310 0.92534 0.91743 0.93159 0.91738 0.92640 0.89884 0.91683 0.89924 0.91580 0.89995 0.91854 0.90977 0.85211 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.67 37.16 0.36 -1.54 16 2 C -0.12 -1.34 4.97 -26.73 -0.13 -1.47 16 3 C -0.10 -1.46 2.16 -90.48 -0.20 -1.66 16 4 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 5 C 0.14 2.60 5.00 -3.71 -0.02 2.58 16 6 N -1.01 -21.21 3.29 -113.52 -0.37 -21.58 16 7 S 2.72 74.13 4.97 -107.50 -0.53 73.59 16 8 O -1.01 -30.12 16.73 -57.18 -0.96 -31.07 16 9 O -1.01 -30.03 16.73 -57.18 -0.96 -30.99 16 10 C -1.02 -28.43 9.75 30.60 0.30 -28.13 16 11 H 0.10 2.55 7.81 -52.48 -0.41 2.14 16 12 C 0.13 3.77 5.46 -17.82 -0.10 3.67 16 13 N -0.85 -25.35 13.19 55.43 0.73 -24.61 16 14 Si 0.92 20.83 29.54 -169.99 -5.02 15.81 16 15 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 18 C 0.14 2.49 6.12 -3.71 -0.02 2.46 16 19 C -0.13 -1.86 5.78 -26.61 -0.15 -2.02 16 20 C 0.10 1.30 3.08 -67.66 -0.21 1.09 16 21 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 22 N -0.84 -9.24 7.78 -4.62 -0.04 -9.27 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.86 6.70 -51.93 -0.35 0.51 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.68 6.84 -51.93 -0.36 0.32 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.63 5.84 -51.93 -0.30 1.32 16 29 H 0.06 1.11 7.74 -51.93 -0.40 0.70 16 30 H 0.29 7.83 8.31 -40.82 -0.34 7.49 16 31 H 0.07 1.11 7.74 -51.93 -0.40 0.71 16 32 H 0.08 1.59 7.12 -51.92 -0.37 1.22 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.34 3.09 9.04 -39.29 -0.36 2.73 16 36 H 0.34 3.19 7.19 -39.29 -0.28 2.91 16 LS Contribution 296.88 15.07 4.47 4.47 Total: -1.00 -34.59 296.88 -8.17 -42.76 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.32 Total: 5.91 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -0.17 Total: -25.01 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.32 Total: -55.47 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: -1.91 Total: -62.06 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 74.13 SS G_CDS: -0.53 Total: 73.59 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.59 -8.17 -42.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122653238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.861 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds