Wall clock time and date at job start Mon Mar 30 2020 04:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47245 * 2 1 4 4 H 1.08997 * 109.52259 * 55.08379 * 3 2 1 5 5 C 1.53195 * 109.49699 * 295.00064 * 3 2 1 6 6 N 1.46919 * 108.89273 * 185.48402 * 5 3 2 7 7 S 1.65601 * 120.63249 * 233.56084 * 6 5 3 8 8 O 1.42096 * 106.40492 * 203.54197 * 7 6 5 9 9 O 1.42100 * 106.40014 * 336.45576 * 7 6 5 10 10 C 1.76197 * 107.22049 * 89.99584 * 7 6 5 11 11 H 1.08006 * 120.00102 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99917 * 179.97438 * 10 7 6 13 13 N 1.31513 * 120.00282 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99696 * 180.02562 * 12 10 7 15 15 H 1.48497 * 109.47471 * 59.99965 * 14 12 10 16 16 H 1.48498 * 109.46883 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46878 * 299.99893 * 14 12 10 18 18 C 1.46928 * 118.73982 * 53.53793 * 6 5 3 19 19 C 1.53191 * 108.77343 * 306.39079 * 18 6 5 20 20 C 1.53039 * 109.31416 * 54.63452 * 19 18 6 21 21 H 1.09000 * 109.45893 * 178.62518 * 20 19 18 22 22 N 1.46899 * 109.45455 * 58.65461 * 20 19 18 23 23 H 1.08995 * 109.47269 * 299.99567 * 1 2 3 24 24 H 1.09000 * 109.46873 * 60.00319 * 1 2 3 25 25 H 1.09003 * 109.46965 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47051 * 239.99844 * 2 1 3 27 27 H 1.09000 * 109.47421 * 120.00214 * 2 1 3 28 28 H 1.09002 * 109.58720 * 65.62433 * 5 3 2 29 29 H 1.08996 * 109.58651 * 305.34329 * 5 3 2 30 30 H 0.96994 * 119.99853 * 179.97438 * 13 12 10 31 31 H 1.08998 * 109.58787 * 66.18123 * 18 6 5 32 32 H 1.09007 * 109.58600 * 186.46436 * 18 6 5 33 33 H 1.09002 * 109.49529 * 174.58688 * 19 18 6 34 34 H 1.09001 * 109.49774 * 294.68244 * 19 18 6 35 35 H 1.00896 * 111.00569 * 60.00370 * 22 20 19 36 36 H 1.00908 * 110.99713 * 183.95104 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6071 1.9819 0.8424 5 6 1.6350 2.1280 -1.3088 6 7 2.2416 3.4654 -1.3528 7 16 1.3079 4.8070 -1.6183 8 8 2.1754 5.8021 -2.1439 9 8 0.1418 4.3570 -2.2942 10 6 0.7758 5.3921 -0.0438 11 1 1.0776 4.8745 0.8549 12 6 -0.0251 6.5112 0.0412 13 7 -0.3922 7.1418 -1.0530 14 14 -0.5886 7.1318 1.7105 15 1 0.5964 7.4752 2.5370 16 1 -1.4336 8.3396 1.5301 17 1 -1.3773 6.0737 2.3916 18 6 3.6924 3.5900 -1.1563 19 6 4.0744 2.8913 0.1523 20 6 3.5657 1.4482 0.1230 21 1 3.8575 0.9416 1.0429 22 7 4.1495 0.7470 -1.0283 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.5496 2.2173 -1.3539 29 1 1.9885 1.5384 -2.1547 30 1 -0.9559 7.9288 -0.9932 31 1 4.2156 3.1188 -1.9884 32 1 3.9647 4.6441 -1.1033 33 1 5.1589 2.8927 0.2623 34 1 3.6225 3.4193 0.9920 35 1 5.1568 0.7340 -0.9711 36 1 3.7797 -0.1885 -1.1074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122653238.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:01 Heat of formation + Delta-G solvation = -133.034538 kcal Electronic energy + Delta-G solvation = -19396.665775 eV Core-core repulsion = 16426.145761 eV Total energy + Delta-G solvation = -2970.520014 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.12622 -37.45885 -36.12790 -35.46406 -35.08924 -34.36147 -30.78258 -29.38979 -28.25546 -25.31686 -24.68102 -22.06200 -20.96878 -19.86221 -19.07177 -18.26752 -17.08341 -17.00597 -16.56143 -16.19528 -15.89292 -15.33105 -14.95820 -14.65989 -14.53857 -13.99305 -13.93691 -13.55619 -13.38075 -13.05991 -13.00885 -12.91504 -12.58494 -12.49556 -12.37713 -12.34058 -12.30456 -11.85662 -11.52811 -11.24434 -11.22429 -11.05925 -10.89856 -9.84920 -9.21172 -8.72939 -7.47864 0.35007 1.31523 1.34125 1.47006 2.19720 2.57490 2.89119 3.69507 3.79072 3.84103 3.88054 4.08889 4.28026 4.32617 4.41316 4.46608 4.56262 4.59629 4.77714 4.82920 4.91872 4.98781 5.03477 5.04220 5.17278 5.23268 5.25307 5.35933 5.47299 5.53565 5.58814 5.91622 6.10375 6.44242 6.77761 6.83690 8.21191 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022430 B = 0.008045 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.018625 B = 3479.426662 C = 3773.123976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.108 4.108 3 C -0.099 4.099 4 H 0.063 0.937 5 C 0.139 3.861 6 N -1.004 6.004 7 S 2.715 3.285 8 O -1.045 7.045 9 O -1.045 7.045 10 C -1.037 5.037 11 H 0.117 0.883 12 C 0.069 3.931 13 N -0.897 5.897 14 Si 0.988 3.012 15 H -0.249 1.249 16 H -0.263 1.263 17 H -0.250 1.250 18 C 0.130 3.870 19 C -0.126 4.126 20 C 0.110 3.890 21 H 0.056 0.944 22 N -0.848 5.848 23 H 0.047 0.953 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.298 0.702 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.350 0.650 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.610 -14.552 6.893 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.146 4.146 3 C -0.120 4.120 4 H 0.082 0.918 5 C 0.013 3.987 6 N -0.842 5.842 7 S 2.818 3.182 8 O -1.035 7.035 9 O -1.035 7.035 10 C -1.170 5.170 11 H 0.135 0.865 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.806 3.194 15 H -0.173 1.173 16 H -0.187 1.187 17 H -0.173 1.173 18 C 0.005 3.995 19 C -0.166 4.166 20 C -0.001 4.001 21 H 0.073 0.927 22 N -0.382 5.382 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.163 0.837 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.003 -13.487 5.443 16.142 hybrid contribution -0.228 0.158 1.575 1.599 sum 6.775 -13.329 7.018 16.517 Atomic orbital electron populations 1.21873 0.96413 1.02173 1.01418 1.21491 0.95611 0.94287 1.03189 1.21647 0.96081 0.97196 0.97061 0.91843 1.21323 0.96307 0.82137 0.98900 1.57573 1.17234 1.20049 1.89387 1.00040 0.71240 0.70854 0.76083 1.93278 1.68525 1.59858 1.81850 1.93278 1.51031 1.82226 1.76987 1.30953 1.45292 1.23632 1.17129 0.86500 1.26046 0.91188 0.93531 1.03600 1.69996 1.31817 1.19253 1.31769 0.85193 0.79466 0.78587 0.76123 1.17264 1.18727 1.17348 1.21270 0.79139 0.99966 0.99127 1.21966 1.01969 0.95851 0.96770 1.21109 0.92825 0.93722 0.92488 0.92658 1.58613 1.11644 1.23367 1.44536 0.93346 0.93981 0.90939 0.90264 0.90098 0.92366 0.90541 0.89149 0.90215 0.92199 0.88656 0.92075 0.83652 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 9.67 71.98 0.70 -2.98 16 2 C -0.11 -2.16 4.97 30.59 0.15 -2.01 16 3 C -0.10 -2.69 2.16 -10.71 -0.02 -2.71 16 4 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 5 C 0.14 5.00 5.00 86.36 0.43 5.43 16 6 N -1.00 -42.89 3.29 -513.07 -1.69 -44.58 16 7 S 2.72 154.12 4.97 -56.49 -0.28 153.84 16 8 O -1.04 -65.39 16.73 -128.00 -2.14 -67.53 16 9 O -1.05 -65.47 16.73 -128.00 -2.14 -67.61 16 10 C -1.04 -58.94 9.75 67.73 0.66 -58.28 16 11 H 0.12 6.00 7.81 -2.91 -0.02 5.98 16 12 C 0.07 3.93 5.46 84.66 0.46 4.39 16 13 N -0.90 -55.20 13.19 21.45 0.28 -54.91 16 14 Si 0.99 42.14 29.54 68.60 2.03 44.16 16 15 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 16 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 17 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 18 C 0.13 4.63 6.12 86.36 0.53 5.16 16 19 C -0.13 -3.34 5.78 30.67 0.18 -3.17 16 20 C 0.11 2.42 3.08 44.95 0.14 2.56 16 21 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 22 N -0.85 -15.50 7.78 -168.53 -1.31 -16.81 16 23 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.04 1.13 6.70 -2.39 -0.02 1.11 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.08 1.38 6.84 -2.39 -0.02 1.36 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 2.37 5.84 -2.39 -0.01 2.36 16 29 H 0.08 2.55 7.74 -2.39 -0.02 2.53 16 30 H 0.30 16.50 8.31 -92.71 -0.77 15.73 16 31 H 0.08 2.60 7.74 -2.39 -0.02 2.58 16 32 H 0.06 2.37 7.12 -2.38 -0.02 2.36 16 33 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.35 4.96 9.04 -89.70 -0.81 4.15 16 36 H 0.35 5.14 7.19 -89.69 -0.64 4.50 16 Total: -1.00 -78.06 296.88 -2.39 -80.45 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -0.36 Total: 24.58 kcal Atomic # 6 Polarization: -54.81 SS G_CDS: 3.22 Total: -51.59 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -2.72 Total: -116.31 kcal Atomic # 8 Polarization: -130.85 SS G_CDS: -4.28 Total: -135.14 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 154.12 SS G_CDS: -0.28 Total: 153.84 kcal Total: -78.06 -2.39 -80.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122653238.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.583 kcal (2) G-P(sol) polarization free energy of solvation -78.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds