Wall clock time and date at job start Mon Mar 30 2020 05:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.63913 * 2 1 4 4 C 1.54329 * 110.72060 * 236.86404 * 2 1 3 5 5 N 1.47025 * 107.26645 * 263.65201 * 4 2 1 6 6 S 1.65607 * 125.64557 * 181.01471 * 5 4 2 7 7 O 1.42102 * 106.40219 * 203.56166 * 6 5 4 8 8 O 1.42101 * 106.40131 * 336.48307 * 6 5 4 9 9 C 1.76198 * 107.22024 * 90.01992 * 6 5 4 10 10 H 1.08005 * 119.99694 * 359.97438 * 9 6 5 11 11 C 1.37875 * 120.00084 * 180.02562 * 9 6 5 12 12 N 1.31509 * 120.00197 * 359.97438 * 11 9 6 13 13 Si 1.86804 * 119.99832 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.47172 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47025 * 119.99837 * 13 11 9 16 16 H 1.48504 * 109.47023 * 239.99910 * 13 11 9 17 17 C 1.47422 * 108.70530 * 1.05709 * 5 4 2 18 18 C 1.54908 * 104.83341 * 335.87196 * 17 5 4 19 19 H 1.08999 * 111.00544 * 278.93942 * 18 17 5 20 20 N 1.46897 * 111.00556 * 155.08153 * 18 17 5 21 21 C 1.46901 * 110.99555 * 57.06445 * 20 18 17 22 22 C 1.46897 * 111.00020 * 181.01562 * 20 18 17 23 23 H 1.09009 * 109.47355 * 187.65401 * 1 2 3 24 24 H 1.09001 * 109.47520 * 307.65292 * 1 2 3 25 25 H 1.09002 * 109.47307 * 67.65723 * 1 2 3 26 26 H 1.09001 * 109.88224 * 23.06145 * 4 2 1 27 27 H 1.08994 * 109.88365 * 144.23531 * 4 2 1 28 28 H 0.96997 * 120.00114 * 179.97438 * 12 11 9 29 29 H 1.09009 * 110.36331 * 217.03453 * 17 5 4 30 30 H 1.08996 * 110.45855 * 94.76308 * 17 5 4 31 31 H 1.09007 * 109.47135 * 60.00060 * 21 20 18 32 32 H 1.09000 * 109.46976 * 179.97438 * 21 20 18 33 33 H 1.08995 * 109.47801 * 300.00036 * 21 20 18 34 34 H 1.08997 * 109.46856 * 54.91388 * 22 20 18 35 35 H 1.09003 * 109.47017 * 174.91159 * 22 20 18 36 36 H 1.09002 * 109.47678 * 294.91282 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7890 -1.2087 5 7 2.3756 -2.1506 -0.7418 6 16 3.0077 -3.3707 -1.6661 7 8 2.6287 -4.5876 -1.0379 8 8 2.6870 -3.0595 -3.0150 9 6 4.7619 -3.2687 -1.5356 10 1 5.2143 -2.4989 -0.9279 11 6 5.5570 -4.1708 -2.2101 12 7 5.0061 -5.1078 -2.9505 13 14 7.4167 -4.0631 -2.0711 14 1 7.7820 -2.9298 -1.1838 15 1 7.9446 -5.3286 -1.5012 16 1 8.0019 -3.8448 -3.4184 17 6 2.0191 -2.2501 0.6853 18 6 2.0828 -0.7949 1.2124 19 1 3.1096 -0.5044 1.4346 20 7 1.2226 -0.6236 2.3907 21 6 1.5941 -1.5655 3.4550 22 6 1.2644 0.7623 2.8760 23 1 -0.3634 -1.0186 0.1369 24 1 -0.3634 0.6278 0.8136 25 1 -0.3634 0.3907 -0.9505 26 1 1.3250 -0.8247 -1.9980 27 1 2.9850 -0.3161 -1.5801 28 1 5.5655 -5.7422 -3.4253 29 1 2.7383 -2.8766 1.2131 30 1 1.0121 -2.6513 0.7993 31 1 2.6290 -1.3913 3.7495 32 1 0.9419 -1.4169 4.3157 33 1 1.4873 -2.5869 3.0900 34 1 1.0048 1.4400 2.0628 35 1 0.5513 0.8834 3.6915 36 1 2.2680 0.9919 3.2339 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124057714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:20 Heat of formation + Delta-G solvation = -81.729663 kcal Electronic energy + Delta-G solvation = -19083.458911 eV Core-core repulsion = 16115.163643 eV Total energy + Delta-G solvation = -2968.295268 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.25376 -35.66913 -35.19771 -33.93371 -33.08128 -31.61674 -28.61436 -27.29316 -26.11876 -25.95640 -23.48308 -21.24554 -19.20977 -18.71669 -17.48081 -16.40228 -15.98193 -15.20048 -14.88238 -14.68925 -14.31016 -14.00424 -13.90226 -13.09083 -12.84465 -12.66089 -12.32455 -12.15857 -12.06150 -11.95218 -11.85326 -11.42546 -11.23671 -11.18791 -10.71585 -10.59432 -10.54835 -10.33013 -10.25899 -10.20334 -10.13726 -9.25651 -8.90312 -8.34537 -8.10797 -6.69101 -5.31159 2.24864 3.04973 3.13041 3.20273 3.89945 4.08005 4.56042 4.64500 4.72838 5.04816 5.14354 5.20917 5.32937 5.48407 5.51145 5.61077 5.66982 5.71675 5.80545 5.87002 5.94455 5.98146 6.05883 6.18354 6.30020 6.31538 6.35169 6.37063 6.61123 6.89484 7.05102 7.10075 7.34022 7.50877 7.99164 8.89541 10.24414 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027826 B = 0.006654 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.994129 B = 4206.890457 C = 4543.363836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 H 0.077 0.923 4 C 0.129 3.871 5 N -1.020 6.020 6 S 2.728 3.272 7 O -1.001 7.001 8 O -1.000 7.000 9 C -1.020 5.020 10 H 0.101 0.899 11 C 0.132 3.868 12 N -0.846 5.846 13 Si 0.920 3.080 14 H -0.263 1.263 15 H -0.271 1.271 16 H -0.270 1.270 17 C 0.137 3.863 18 C 0.070 3.930 19 H 0.058 0.942 20 N -0.533 5.533 21 C 0.019 3.981 22 C 0.024 3.976 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.290 0.710 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 10.801 10.020 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.113 4.113 3 H 0.096 0.904 4 C 0.002 3.998 5 N -0.855 5.855 6 S 2.830 3.170 7 O -0.991 6.991 8 O -0.991 6.991 9 C -1.153 5.153 10 H 0.120 0.880 11 C -0.085 4.085 12 N -0.476 5.476 13 Si 0.744 3.256 14 H -0.187 1.187 15 H -0.196 1.196 16 H -0.196 1.196 17 C 0.010 3.990 18 C -0.040 4.040 19 H 0.075 0.925 20 N -0.257 5.257 21 C -0.129 4.129 22 C -0.125 4.125 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.869 9.847 9.206 14.703 hybrid contribution 2.490 0.474 0.552 2.594 sum -3.379 10.321 9.758 14.600 Atomic orbital electron populations 1.21622 0.93574 1.02718 1.00528 1.22210 0.97129 0.98287 0.93691 0.90418 1.21609 0.99789 0.82496 0.95859 1.59131 1.80808 1.25454 1.20154 1.00141 0.75681 0.69980 0.71189 1.93359 1.85530 1.42929 1.77313 1.93355 1.86608 1.84058 1.35077 1.30663 1.17811 1.24973 1.41881 0.88029 1.24758 1.01862 0.91581 0.90339 1.69901 1.38647 1.14274 1.24769 0.86142 0.81450 0.79077 0.78936 1.18682 1.19572 1.19552 1.21714 1.00646 0.94905 0.81686 1.22944 0.94383 0.96689 0.89977 0.92452 1.61986 1.52957 1.04717 1.06014 1.22448 0.98717 0.97465 0.94264 1.22406 0.99784 0.89719 1.00542 0.92019 0.92339 0.93320 0.91549 0.92016 0.89918 0.91162 0.91336 0.95587 0.91534 0.90664 0.91093 0.91570 0.95882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 8.36 37.15 0.31 -1.27 16 2 C -0.09 -1.27 2.64 -88.79 -0.23 -1.50 16 3 H 0.08 0.90 8.00 -51.93 -0.42 0.48 16 4 C 0.13 2.26 6.57 -3.06 -0.02 2.24 16 5 N -1.02 -21.46 3.70 -111.42 -0.41 -21.87 16 6 S 2.73 74.42 5.22 -107.50 -0.56 73.86 16 7 O -1.00 -29.81 17.60 -57.17 -1.01 -30.82 16 8 O -1.00 -29.85 17.60 -57.17 -1.01 -30.86 16 9 C -1.02 -28.57 9.74 30.60 0.30 -28.28 16 10 H 0.10 2.63 7.81 -52.48 -0.41 2.22 16 11 C 0.13 3.74 5.46 -17.82 -0.10 3.65 16 12 N -0.85 -25.19 13.19 55.43 0.73 -24.46 16 13 Si 0.92 20.79 29.54 -169.99 -5.02 15.77 16 14 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 17 C 0.14 2.44 4.87 -2.53 -0.01 2.43 16 18 C 0.07 1.00 2.50 -65.57 -0.16 0.83 16 19 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 20 N -0.53 -6.42 3.99 -240.58 -0.96 -7.38 16 21 C 0.02 0.21 9.30 60.07 0.56 0.77 16 22 C 0.02 0.23 8.99 60.06 0.54 0.77 16 23 H 0.06 0.86 7.36 -51.92 -0.38 0.48 16 24 H 0.06 0.64 6.46 -51.93 -0.34 0.30 16 25 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 26 H 0.07 1.15 7.81 -51.93 -0.41 0.75 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.29 7.72 8.31 -40.82 -0.34 7.38 16 29 H 0.07 1.27 8.03 -51.92 -0.42 0.85 16 30 H 0.07 1.19 7.65 -51.93 -0.40 0.79 16 31 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.88 7.00 -51.93 -0.36 0.52 16 34 H 0.07 0.65 6.14 -51.93 -0.32 0.33 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 302.13 15.07 4.55 4.55 Total: -1.00 -34.55 302.13 -8.04 -42.59 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.54 Total: -1.02 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 1.18 Total: -20.36 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.64 Total: -53.71 kcal Atomic # 8 Polarization: -59.66 SS G_CDS: -2.01 Total: -61.68 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 74.42 SS G_CDS: -0.56 Total: 73.86 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.55 -8.04 -42.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124057714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.136 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds