Wall clock time and date at job start Mon Mar 30 2020 05:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.63913 * 2 1 4 4 C 1.54329 * 110.72060 * 236.86404 * 2 1 3 5 5 N 1.47025 * 107.26645 * 263.65201 * 4 2 1 6 6 S 1.65607 * 125.64557 * 181.01471 * 5 4 2 7 7 O 1.42102 * 106.40219 * 203.56166 * 6 5 4 8 8 O 1.42101 * 106.40131 * 336.48307 * 6 5 4 9 9 C 1.76198 * 107.22024 * 90.01992 * 6 5 4 10 10 H 1.08005 * 119.99694 * 359.97438 * 9 6 5 11 11 C 1.37875 * 120.00084 * 180.02562 * 9 6 5 12 12 N 1.31509 * 120.00197 * 359.97438 * 11 9 6 13 13 Si 1.86804 * 119.99832 * 180.02562 * 11 9 6 14 14 H 1.48499 * 109.47172 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47025 * 119.99837 * 13 11 9 16 16 H 1.48504 * 109.47023 * 239.99910 * 13 11 9 17 17 C 1.47422 * 108.70530 * 1.05709 * 5 4 2 18 18 C 1.54908 * 104.83341 * 335.87196 * 17 5 4 19 19 H 1.08999 * 111.00544 * 278.93942 * 18 17 5 20 20 N 1.46897 * 111.00556 * 155.08153 * 18 17 5 21 21 C 1.46901 * 110.99555 * 57.06445 * 20 18 17 22 22 C 1.46897 * 111.00020 * 181.01562 * 20 18 17 23 23 H 1.09009 * 109.47355 * 187.65401 * 1 2 3 24 24 H 1.09001 * 109.47520 * 307.65292 * 1 2 3 25 25 H 1.09002 * 109.47307 * 67.65723 * 1 2 3 26 26 H 1.09001 * 109.88224 * 23.06145 * 4 2 1 27 27 H 1.08994 * 109.88365 * 144.23531 * 4 2 1 28 28 H 0.96997 * 120.00114 * 179.97438 * 12 11 9 29 29 H 1.09009 * 110.36331 * 217.03453 * 17 5 4 30 30 H 1.08996 * 110.45855 * 94.76308 * 17 5 4 31 31 H 1.09007 * 109.47135 * 60.00060 * 21 20 18 32 32 H 1.09000 * 109.46976 * 179.97438 * 21 20 18 33 33 H 1.08995 * 109.47801 * 300.00036 * 21 20 18 34 34 H 1.08997 * 109.46856 * 54.91388 * 22 20 18 35 35 H 1.09003 * 109.47017 * 174.91159 * 22 20 18 36 36 H 1.09002 * 109.47678 * 294.91282 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7890 -1.2087 5 7 2.3756 -2.1506 -0.7418 6 16 3.0077 -3.3707 -1.6661 7 8 2.6287 -4.5876 -1.0379 8 8 2.6870 -3.0595 -3.0150 9 6 4.7619 -3.2687 -1.5356 10 1 5.2143 -2.4989 -0.9279 11 6 5.5570 -4.1708 -2.2101 12 7 5.0061 -5.1078 -2.9505 13 14 7.4167 -4.0631 -2.0711 14 1 7.7820 -2.9298 -1.1838 15 1 7.9446 -5.3286 -1.5012 16 1 8.0019 -3.8448 -3.4184 17 6 2.0191 -2.2501 0.6853 18 6 2.0828 -0.7949 1.2124 19 1 3.1096 -0.5044 1.4346 20 7 1.2226 -0.6236 2.3907 21 6 1.5941 -1.5655 3.4550 22 6 1.2644 0.7623 2.8760 23 1 -0.3634 -1.0186 0.1369 24 1 -0.3634 0.6278 0.8136 25 1 -0.3634 0.3907 -0.9505 26 1 1.3250 -0.8247 -1.9980 27 1 2.9850 -0.3161 -1.5801 28 1 5.5655 -5.7422 -3.4253 29 1 2.7383 -2.8766 1.2131 30 1 1.0121 -2.6513 0.7993 31 1 2.6290 -1.3913 3.7495 32 1 0.9419 -1.4169 4.3157 33 1 1.4873 -2.5869 3.0900 34 1 1.0048 1.4400 2.0628 35 1 0.5513 0.8834 3.6915 36 1 2.2680 0.9919 3.2339 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124057714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:19 Heat of formation + Delta-G solvation = -109.433889 kcal Electronic energy + Delta-G solvation = -19084.660256 eV Core-core repulsion = 16115.163643 eV Total energy + Delta-G solvation = -2969.496613 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45790 -37.47185 -36.79547 -36.19444 -35.21970 -32.89606 -29.84320 -28.30525 -28.18339 -27.16649 -24.59088 -22.54577 -20.76626 -20.34520 -19.30244 -18.40044 -17.38239 -16.97513 -16.27925 -15.95636 -15.82568 -15.64134 -15.38173 -14.34460 -14.28714 -14.08821 -13.90050 -13.41888 -13.35983 -13.20560 -13.05675 -13.02519 -12.95714 -12.57703 -12.51275 -12.35909 -12.31440 -12.00881 -11.77848 -11.59035 -11.40000 -11.29963 -11.02000 -9.80503 -9.26107 -8.78134 -7.53286 0.21737 1.30558 1.30800 1.49164 2.17520 2.53280 2.74329 3.10826 3.43302 3.66272 3.74743 4.09101 4.25058 4.30672 4.37548 4.45708 4.54612 4.58295 4.68334 4.76172 4.78283 4.83763 4.98655 5.01943 5.08006 5.09671 5.14293 5.19799 5.28637 5.38990 5.59797 5.77504 5.87063 6.10352 6.17168 6.73474 8.17594 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027826 B = 0.006654 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.994129 B = 4206.890457 C = 4543.363836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 H 0.111 0.889 4 C 0.115 3.885 5 N -1.022 6.022 6 S 2.732 3.268 7 O -1.039 7.039 8 O -1.038 7.038 9 C -1.039 5.039 10 H 0.117 0.883 11 C 0.068 3.932 12 N -0.895 5.895 13 Si 0.993 3.007 14 H -0.248 1.248 15 H -0.257 1.257 16 H -0.257 1.257 17 C 0.129 3.871 18 C 0.082 3.918 19 H 0.059 0.941 20 N -0.538 5.538 21 C 0.017 3.983 22 C 0.023 3.977 23 H 0.039 0.961 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.300 0.700 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.024 13.090 11.601 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.129 0.871 4 C -0.011 4.011 5 N -0.860 5.860 6 S 2.835 3.165 7 O -1.030 7.030 8 O -1.028 7.028 9 C -1.173 5.173 10 H 0.135 0.865 11 C -0.144 4.144 12 N -0.526 5.526 13 Si 0.810 3.190 14 H -0.171 1.171 15 H -0.182 1.182 16 H -0.181 1.181 17 C 0.003 3.997 18 C -0.028 4.028 19 H 0.077 0.923 20 N -0.262 5.262 21 C -0.131 4.131 22 C -0.125 4.125 23 H 0.059 0.941 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.043 12.141 10.792 17.009 hybrid contribution 2.122 -0.208 0.107 2.135 sum -2.921 11.934 10.899 16.424 Atomic orbital electron populations 1.21605 0.92574 1.01951 1.01914 1.22226 0.97833 0.98954 0.91067 0.87135 1.21980 1.00185 0.81042 0.97854 1.58557 1.80316 1.25847 1.21330 0.99577 0.75935 0.70194 0.70758 1.93295 1.86059 1.45824 1.77792 1.93292 1.87108 1.84779 1.37654 1.30971 1.18310 1.25681 1.42333 0.86455 1.26076 1.08152 0.90767 0.89452 1.69991 1.41201 1.15468 1.25961 0.85072 0.73854 0.80100 0.79933 1.17056 1.18151 1.18075 1.21936 1.00132 0.97839 0.79806 1.22762 0.95108 0.93690 0.91270 0.92321 1.61989 1.52169 1.06420 1.05650 1.22488 0.99425 0.96552 0.94610 1.22500 1.00590 0.87976 1.01402 0.94134 0.90147 0.92459 0.92054 0.91660 0.88975 0.92187 0.91474 0.95392 0.89396 0.92201 0.90200 0.89890 0.95499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 8.36 71.98 0.60 -2.17 16 2 C -0.08 -2.00 2.64 -9.61 -0.03 -2.03 16 3 H 0.11 2.10 8.00 -2.39 -0.02 2.08 16 4 C 0.11 3.96 6.57 86.73 0.57 4.53 16 5 N -1.02 -43.70 3.70 -506.42 -1.87 -45.58 16 6 S 2.73 154.15 5.22 -56.49 -0.29 153.86 16 7 O -1.04 -64.66 17.60 -128.00 -2.25 -66.92 16 8 O -1.04 -64.37 17.60 -128.00 -2.25 -66.63 16 9 C -1.04 -58.92 9.74 67.73 0.66 -58.26 16 10 H 0.12 6.04 7.81 -2.91 -0.02 6.02 16 11 C 0.07 3.87 5.46 84.65 0.46 4.33 16 12 N -0.89 -54.45 13.19 21.45 0.28 -54.16 16 13 Si 0.99 41.80 29.54 68.60 2.03 43.83 16 14 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 15 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 16 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 17 C 0.13 4.60 4.87 86.86 0.42 5.03 16 18 C 0.08 2.19 2.50 46.31 0.12 2.30 16 19 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 20 N -0.54 -11.59 3.99 -915.07 -3.65 -15.25 16 21 C 0.02 0.35 9.30 127.69 1.19 1.54 16 22 C 0.02 0.35 8.99 127.69 1.15 1.50 16 23 H 0.04 1.08 7.36 -2.38 -0.02 1.06 16 24 H 0.08 1.47 6.46 -2.39 -0.02 1.45 16 25 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 26 H 0.06 2.14 7.81 -2.39 -0.02 2.13 16 27 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.30 16.26 8.31 -92.71 -0.77 15.49 16 29 H 0.06 2.22 8.03 -2.38 -0.02 2.20 16 30 H 0.07 2.39 7.65 -2.39 -0.02 2.37 16 31 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.38 7.00 -2.39 -0.02 1.36 16 34 H 0.08 1.11 6.14 -2.39 -0.01 1.09 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -76.73 302.13 -1.82 -78.55 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.05 Total: 15.51 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 5.14 Total: -43.22 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -5.24 Total: -114.99 kcal Atomic # 8 Polarization: -129.04 SS G_CDS: -4.51 Total: -133.54 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 154.15 SS G_CDS: -0.29 Total: 153.86 kcal Total: -76.73 -1.82 -78.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124057714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.884 kcal (2) G-P(sol) polarization free energy of solvation -76.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds