Wall clock time and date at job start Mon Mar 30 2020 05:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.88643 * 2 1 4 4 C 1.54912 * 111.00170 * 123.87629 * 2 1 3 5 5 N 1.47433 * 104.82822 * 155.08457 * 4 2 1 6 6 S 1.65598 * 125.64508 * 155.83527 * 5 4 2 7 7 O 1.42099 * 106.39973 * 203.56444 * 6 5 4 8 8 O 1.42094 * 106.40672 * 336.48723 * 6 5 4 9 9 C 1.76201 * 107.21548 * 90.02655 * 6 5 4 10 10 H 1.07995 * 120.00155 * 0.02562 * 9 6 5 11 11 C 1.37877 * 119.99724 * 179.97438 * 9 6 5 12 12 N 1.31518 * 119.99910 * 180.02562 * 11 9 6 13 13 Si 1.86800 * 120.00204 * 0.02562 * 11 9 6 14 14 H 1.48505 * 109.47112 * 89.99503 * 13 11 9 15 15 H 1.48501 * 109.47188 * 209.99650 * 13 11 9 16 16 H 1.48497 * 109.47124 * 329.99323 * 13 11 9 17 17 C 1.47016 * 108.70465 * 335.87510 * 5 4 2 18 18 C 1.54372 * 107.28902 * 1.09027 * 17 5 4 19 19 H 1.08998 * 110.70574 * 263.79515 * 18 17 5 20 20 N 1.46908 * 110.75886 * 140.50863 * 18 17 5 21 21 C 1.46894 * 110.99789 * 62.68345 * 20 18 17 22 22 C 1.46893 * 111.00200 * 186.64125 * 20 18 17 23 23 H 1.09000 * 109.47021 * 289.77925 * 1 2 3 24 24 H 1.09001 * 109.46938 * 49.77410 * 1 2 3 25 25 H 1.09001 * 109.46847 * 169.77664 * 1 2 3 26 26 H 1.08996 * 110.36706 * 273.91783 * 4 2 1 27 27 H 1.08996 * 110.36581 * 36.24850 * 4 2 1 28 28 H 0.97003 * 120.00174 * 180.02562 * 12 11 9 29 29 H 1.08998 * 109.88735 * 120.47109 * 17 5 4 30 30 H 1.09001 * 109.88187 * 241.48737 * 17 5 4 31 31 H 1.09001 * 109.47374 * 60.00204 * 21 20 18 32 32 H 1.08997 * 109.47278 * 180.02562 * 21 20 18 33 33 H 1.09007 * 109.47677 * 300.00294 * 21 20 18 34 34 H 1.08998 * 109.47242 * 68.54638 * 22 20 18 35 35 H 1.08996 * 109.47157 * 188.54568 * 22 20 18 36 36 H 1.09002 * 109.47085 * 308.54736 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0852 -0.8061 1.2007 5 7 3.4272 -1.2427 0.7739 6 16 4.6816 -1.6320 1.7824 7 8 5.8729 -1.4522 1.0290 8 8 4.4308 -0.9639 3.0112 9 6 4.5625 -3.3571 2.1209 10 1 3.7650 -3.9394 1.6836 11 6 5.4882 -3.9638 2.9432 12 7 5.3997 -5.2515 3.1954 13 14 6.8680 -2.9567 3.6990 14 1 6.4260 -2.4167 5.0098 15 1 8.0603 -3.8198 3.8958 16 1 7.2148 -1.8330 2.7922 17 6 3.4675 -1.2743 -0.6954 18 6 2.0862 -0.8075 -1.2024 19 1 1.4469 -1.6626 -1.4215 20 7 2.2291 0.0528 -2.3847 21 6 2.8391 -0.6827 -3.5003 22 6 0.9353 0.6269 -2.7775 23 1 -0.3633 0.3478 0.9670 24 1 -0.3633 0.6637 -0.7846 25 1 -0.3633 -1.0114 -0.1824 26 1 2.1560 -0.1711 2.0837 27 1 1.4519 -1.6698 1.4031 28 1 6.0507 -5.6782 3.7742 29 1 4.2426 -0.6000 -1.0596 30 1 3.6678 -2.2892 -1.0390 31 1 2.2103 -1.5340 -3.7614 32 1 2.9337 -0.0225 -4.3624 33 1 3.8266 -1.0376 -3.2049 34 1 0.6108 1.3423 -2.0219 35 1 1.0389 1.1336 -3.7369 36 1 0.1960 -0.1694 -2.8651 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124057920.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:23 Heat of formation + Delta-G solvation = -93.285608 kcal Electronic energy + Delta-G solvation = -19039.869610 eV Core-core repulsion = 16071.073239 eV Total energy + Delta-G solvation = -2968.796371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.43227 -37.75758 -36.82047 -36.54889 -35.22507 -33.33638 -29.96581 -28.59199 -28.21432 -27.01074 -24.57993 -22.14109 -21.12011 -20.70407 -19.42202 -18.69676 -17.63597 -17.25358 -16.41572 -15.77024 -15.73482 -15.56903 -15.11177 -14.96232 -14.84045 -14.12287 -14.07457 -13.75299 -13.51185 -13.48185 -13.13930 -13.07385 -12.90085 -12.76626 -12.62330 -12.51979 -12.28029 -11.88331 -11.82657 -11.65178 -11.37067 -11.31390 -11.24375 -9.83341 -9.27764 -9.00462 -7.56956 0.01659 1.01838 1.11472 1.18803 1.86333 2.37331 2.40128 2.97907 3.33542 3.41348 3.56810 4.05156 4.11532 4.27769 4.33740 4.44059 4.52689 4.56501 4.59524 4.69980 4.74514 4.77669 4.87000 4.95632 5.01164 5.07537 5.13146 5.16868 5.31308 5.38394 5.46557 5.65837 5.96824 6.10731 6.15828 6.48939 8.17557 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034689 B = 0.006444 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.988167 B = 4343.793963 C = 4551.085566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.092 0.908 4 C 0.111 3.889 5 N -1.014 6.014 6 S 2.712 3.288 7 O -1.024 7.024 8 O -1.023 7.023 9 C -1.039 5.039 10 H 0.102 0.898 11 C 0.108 3.892 12 N -0.853 5.853 13 Si 0.824 3.176 14 H -0.236 1.236 15 H -0.215 1.215 16 H -0.230 1.230 17 C 0.123 3.877 18 C 0.087 3.913 19 H 0.067 0.933 20 N -0.550 5.550 21 C 0.017 3.983 22 C 0.021 3.979 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.292 0.708 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.518 9.748 -10.921 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.110 0.890 4 C -0.014 4.014 5 N -0.853 5.853 6 S 2.815 3.185 7 O -1.015 7.015 8 O -1.014 7.014 9 C -1.171 5.171 10 H 0.121 0.879 11 C -0.109 4.109 12 N -0.483 5.483 13 Si 0.641 3.359 14 H -0.159 1.159 15 H -0.137 1.137 16 H -0.153 1.153 17 C -0.003 4.003 18 C -0.023 4.023 19 H 0.085 0.915 20 N -0.275 5.275 21 C -0.131 4.131 22 C -0.126 4.126 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.422 10.528 -10.350 17.514 hybrid contribution 0.048 -1.653 0.282 1.677 sum -9.373 8.876 -10.068 16.370 Atomic orbital electron populations 1.21935 0.91448 1.02974 1.03670 1.22385 0.97507 0.99215 0.91416 0.88962 1.22314 0.81707 0.98653 0.98757 1.58170 1.26912 1.83769 1.16471 1.00090 0.71165 0.75559 0.71722 1.93416 1.46628 1.88558 1.72866 1.93359 1.85450 1.77245 1.45316 1.31043 1.23553 1.20121 1.42428 0.87933 1.25186 0.97502 0.95752 0.92468 1.70010 1.35641 1.10581 1.32063 0.87506 0.82517 0.82626 0.83289 1.15950 1.13734 1.15286 1.21771 0.99314 1.00634 0.78550 1.22710 0.93788 0.94655 0.91170 0.91527 1.61991 1.25701 1.34815 1.05016 1.22500 0.99343 0.97549 0.93675 1.22631 0.88424 0.99433 1.02140 0.91173 0.89754 0.92169 0.90434 0.91079 0.89718 0.91349 0.92453 0.94869 0.89565 0.92227 0.90082 0.90315 0.94648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.81 71.98 0.63 -1.78 16 2 C -0.08 -2.08 2.64 -9.40 -0.02 -2.10 16 3 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.11 3.65 6.58 86.85 0.57 4.22 16 5 N -1.01 -41.74 3.70 -506.34 -1.87 -43.61 16 6 S 2.71 141.99 4.44 -56.49 -0.25 141.74 16 7 O -1.02 -57.14 15.60 -128.00 -2.00 -59.14 16 8 O -1.02 -56.14 16.15 -128.00 -2.07 -58.20 16 9 C -1.04 -60.70 10.29 67.73 0.70 -60.01 16 10 H 0.10 6.15 8.06 -2.91 -0.02 6.13 16 11 C 0.11 6.36 5.47 84.65 0.46 6.82 16 12 N -0.85 -50.36 13.96 21.45 0.30 -50.06 16 13 Si 0.82 41.99 26.54 68.60 1.82 43.81 16 14 H -0.24 -11.60 7.11 99.48 0.71 -10.90 16 15 H -0.22 -9.58 7.11 99.48 0.71 -8.87 16 16 H -0.23 -12.13 5.61 99.48 0.56 -11.57 16 17 C 0.12 4.30 5.60 86.75 0.49 4.79 16 18 C 0.09 2.24 2.19 46.12 0.10 2.34 16 19 H 0.07 1.61 7.89 -2.39 -0.02 1.59 16 20 N -0.55 -12.10 4.84 -916.18 -4.43 -16.54 16 21 C 0.02 0.34 9.34 127.69 1.19 1.53 16 22 C 0.02 0.32 8.21 127.69 1.05 1.37 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.08 1.09 5.51 -2.39 -0.01 1.08 16 25 H 0.06 1.00 7.94 -2.39 -0.02 0.98 16 26 H 0.08 2.59 7.78 -2.39 -0.02 2.57 16 27 H 0.07 2.21 8.04 -2.39 -0.02 2.19 16 28 H 0.29 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.07 2.46 7.73 -2.39 -0.02 2.44 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.09 1.36 8.03 -2.39 -0.02 1.34 16 33 H 0.06 1.34 7.05 -2.38 -0.02 1.32 16 34 H 0.08 1.15 5.80 -2.39 -0.01 1.13 16 35 H 0.08 1.00 7.97 -2.39 -0.02 0.98 16 36 H 0.03 0.50 8.10 -2.39 -0.02 0.48 16 Total: -1.00 -70.89 294.93 -2.43 -73.31 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.90 Total: 11.49 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 5.17 Total: -42.82 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -6.01 Total: -110.20 kcal Atomic # 8 Polarization: -113.28 SS G_CDS: -4.06 Total: -117.34 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.82 Total: 43.81 kcal Atomic # 16 Polarization: 141.99 SS G_CDS: -0.25 Total: 141.74 kcal Total: -70.89 -2.43 -73.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124057920.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.971 kcal (2) G-P(sol) polarization free energy of solvation -70.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds