Wall clock time and date at job start Mon Mar 30 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00404 * 2 1 4 4 C 1.50703 * 109.47346 * 270.00239 * 3 2 1 5 5 O 1.21288 * 119.99830 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00072 * 180.02562 * 4 3 2 7 7 C 1.37092 * 119.99724 * 179.97438 * 6 4 3 8 8 H 1.08001 * 120.00233 * 359.97438 * 7 6 4 9 9 C 1.38953 * 119.99616 * 179.97438 * 7 6 4 10 10 N 1.31409 * 120.00469 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99736 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46928 * 90.00382 * 11 9 7 13 13 H 1.48500 * 109.47048 * 210.00025 * 11 9 7 14 14 H 1.48506 * 109.47171 * 330.00191 * 11 9 7 15 15 C 1.34781 * 119.99901 * 180.02562 * 2 1 3 16 16 O 1.21555 * 119.99885 * 184.85176 * 15 2 1 17 17 C 1.47842 * 120.00064 * 4.84940 * 15 2 1 18 18 C 1.39579 * 120.14265 * 320.89226 * 17 15 2 19 19 C 1.37959 * 119.85245 * 179.97438 * 18 17 15 20 20 C 1.38362 * 120.14323 * 359.97438 * 19 18 17 21 21 C 1.38356 * 120.29434 * 0.02562 * 20 19 18 22 22 C 1.37961 * 120.14245 * 359.97438 * 21 20 19 23 23 H 1.08992 * 109.47314 * 265.52684 * 1 2 3 24 24 H 1.09000 * 109.46801 * 25.52738 * 1 2 3 25 25 H 1.09003 * 109.47225 * 145.52315 * 1 2 3 26 26 H 1.08999 * 109.46898 * 29.99746 * 3 2 1 27 27 H 1.09004 * 109.47730 * 149.99374 * 3 2 1 28 28 H 0.96997 * 119.99780 * 359.97438 * 6 4 3 29 29 H 0.96995 * 120.00033 * 179.97438 * 10 9 7 30 30 H 1.08001 * 120.07334 * 359.70869 * 18 17 15 31 31 H 1.08001 * 119.92744 * 180.02562 * 19 18 17 32 32 H 1.07999 * 119.84726 * 179.97438 * 20 19 18 33 33 H 1.07996 * 119.92629 * 180.02562 * 21 20 19 34 34 H 1.08002 * 120.06762 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 8 2.0550 1.0210 -2.3427 6 7 3.1118 2.8510 -1.6671 7 6 3.3407 3.2465 -2.9596 8 1 2.9901 2.6385 -3.7805 9 6 4.0238 4.4296 -3.2134 10 7 4.4509 5.1691 -2.2147 11 14 4.3364 4.9681 -4.9747 12 1 3.2067 5.8108 -5.4424 13 1 5.5967 5.7511 -5.0366 14 1 4.4543 3.7706 -5.8450 15 6 2.1388 -1.1672 -0.0005 16 8 3.3511 -1.1692 0.0885 17 6 1.4036 -2.4453 -0.1093 18 6 0.1896 -2.6145 0.5583 19 6 -0.4917 -3.8094 0.4522 20 6 0.0256 -4.8385 -0.3144 21 6 1.2285 -4.6772 -0.9788 22 6 1.9198 -3.4874 -0.8810 23 1 -0.3633 -0.0801 1.0244 24 1 -0.3633 0.9274 -0.4429 25 1 -0.3634 -0.8472 -0.5817 26 1 1.6085 2.0283 0.5138 27 1 3.1499 1.1384 0.5139 28 1 3.4270 3.3968 -0.9298 29 1 4.9281 5.9947 -2.3919 30 1 -0.2133 -1.8133 1.1602 31 1 -1.4314 -3.9415 0.9680 32 1 -0.5116 -5.7720 -0.3938 33 1 1.6266 -5.4843 -1.5758 34 1 2.8589 -3.3630 -1.3998 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126774334.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:42 Heat of formation + Delta-G solvation = -31.776053 kcal Electronic energy + Delta-G solvation = -19049.113563 eV Core-core repulsion = 15947.540495 eV Total energy + Delta-G solvation = -3101.573068 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.27475 -38.53412 -37.58607 -35.23156 -33.85263 -31.54950 -31.15861 -31.02764 -28.26645 -26.48284 -24.71374 -23.02451 -22.56642 -20.14144 -19.00406 -17.89138 -17.26989 -16.56621 -16.26035 -15.88376 -15.05213 -14.69943 -14.53024 -14.12114 -13.87062 -13.69500 -13.54125 -13.15615 -12.91552 -12.62964 -12.28271 -12.16782 -11.60039 -11.54146 -11.38040 -11.07013 -11.00702 -10.39075 -10.22723 -9.67147 -9.51529 -9.06272 -8.96072 -8.93775 -8.03254 -7.97356 -6.41396 -3.82325 0.95246 1.29308 2.89232 3.17899 3.22235 3.27028 3.33863 3.82099 3.87954 4.19249 4.57189 4.76498 4.83692 4.98058 5.05074 5.23079 5.25162 5.33375 5.42736 5.48031 5.65074 5.77072 5.86174 5.90834 5.96753 6.22155 6.25467 6.34250 6.36814 6.66728 6.82006 7.55353 7.58700 8.04021 8.39203 8.60768 9.17327 9.52734 10.03606 10.76043 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.037375 B = 0.004216 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.975730 B = 6639.856799 C = 6874.866759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.585 5.585 3 C 0.103 3.897 4 C 0.425 3.575 5 O -0.588 6.588 6 N -0.559 5.559 7 C -0.299 4.299 8 H 0.102 0.898 9 C 0.023 3.977 10 N -0.900 5.900 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.283 1.283 14 H -0.270 1.270 15 C 0.562 3.438 16 O -0.534 6.534 17 C -0.117 4.117 18 C -0.097 4.097 19 C -0.130 4.130 20 C -0.105 4.105 21 C -0.127 4.127 22 C -0.064 4.064 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.393 0.607 29 H 0.272 0.728 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.284 -13.445 7.742 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.316 5.316 3 C -0.024 4.024 4 C 0.209 3.791 5 O -0.472 6.472 6 N -0.195 5.195 7 C -0.429 4.429 8 H 0.120 0.880 9 C -0.178 4.178 10 N -0.541 5.541 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.194 1.194 15 C 0.351 3.649 16 O -0.411 6.411 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.148 4.148 20 C -0.123 4.123 21 C -0.145 4.145 22 C -0.083 4.083 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.227 0.773 29 H 0.082 0.918 30 H 0.153 0.847 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.792 -13.691 7.169 18.296 hybrid contribution 0.307 0.795 -0.510 0.993 sum -9.485 -12.897 6.659 17.339 Atomic orbital electron populations 1.22079 0.79577 1.04194 1.00524 1.47138 1.06832 1.05216 1.72464 1.21274 0.98840 0.85029 0.97230 1.20290 0.84625 0.83727 0.90411 1.90516 1.55904 1.55221 1.45593 1.41837 1.49034 1.19688 1.08963 1.19696 1.33659 1.05287 0.84268 0.87999 1.25266 0.96796 0.96115 0.99662 1.69608 1.38503 1.14763 1.31250 0.85854 0.77717 0.78743 0.81952 1.20394 1.20856 1.19426 1.18284 0.86979 0.83488 0.76171 1.90774 1.13601 1.87180 1.49541 1.19940 0.96108 0.94782 1.01171 1.21663 0.93363 0.98060 0.98453 1.21081 1.00351 0.93325 1.00090 1.21307 0.95765 0.98862 0.96344 1.21123 0.95586 0.97443 1.00373 1.21258 0.99356 0.91695 0.95945 0.92589 0.90662 0.90594 0.88770 0.88035 0.77346 0.91814 0.84700 0.85591 0.85866 0.85485 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 8.88 59.84 0.53 1.55 16 2 N -0.59 -10.14 2.36 -184.08 -0.43 -10.57 16 3 C 0.10 1.91 5.90 -5.19 -0.03 1.88 16 4 C 0.42 10.39 7.85 -10.98 -0.09 10.30 16 5 O -0.59 -16.47 16.01 5.55 0.09 -16.38 16 6 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 7 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 9 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 10 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 11 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 C 0.56 10.55 7.35 -12.33 -0.09 10.46 16 16 O -0.53 -11.96 16.47 5.32 0.09 -11.88 16 17 C -0.12 -1.77 5.24 -104.97 -0.55 -2.32 16 18 C -0.10 -1.12 7.56 -39.18 -0.30 -1.41 16 19 C -0.13 -1.24 10.03 -39.64 -0.40 -1.64 16 20 C -0.10 -0.99 10.04 -39.49 -0.40 -1.39 16 21 C -0.13 -1.40 10.03 -39.64 -0.40 -1.80 16 22 C -0.06 -0.91 9.63 -39.19 -0.38 -1.29 16 23 H 0.06 0.52 6.89 -51.93 -0.36 0.16 16 24 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 25 H 0.08 0.95 5.81 -51.93 -0.30 0.65 16 26 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 27 H 0.10 1.90 7.36 -51.93 -0.38 1.52 16 28 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.14 1.28 5.31 -52.49 -0.28 1.00 16 31 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.13 1.98 8.05 -52.49 -0.42 1.56 16 LS Contribution 298.82 15.07 4.50 4.50 Total: -1.00 -35.19 298.82 -6.13 -41.32 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -3.68 Total: 9.07 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -2.33 Total: 6.21 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.23 Total: -49.17 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: 0.18 Total: -28.26 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.19 -6.13 -41.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126774334.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.541 kcal (2) G-P(sol) polarization free energy of solvation -35.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds