Wall clock time and date at job start Mon Mar 30 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46495 * 120.00404 * 2 1 4 4 C 1.50703 * 109.47346 * 270.00239 * 3 2 1 5 5 O 1.21288 * 119.99830 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00072 * 180.02562 * 4 3 2 7 7 C 1.37092 * 119.99724 * 179.97438 * 6 4 3 8 8 H 1.08001 * 120.00233 * 359.97438 * 7 6 4 9 9 C 1.38953 * 119.99616 * 179.97438 * 7 6 4 10 10 N 1.31409 * 120.00469 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99736 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46928 * 90.00382 * 11 9 7 13 13 H 1.48500 * 109.47048 * 210.00025 * 11 9 7 14 14 H 1.48506 * 109.47171 * 330.00191 * 11 9 7 15 15 C 1.34781 * 119.99901 * 180.02562 * 2 1 3 16 16 O 1.21555 * 119.99885 * 184.85176 * 15 2 1 17 17 C 1.47842 * 120.00064 * 4.84940 * 15 2 1 18 18 C 1.39579 * 120.14265 * 320.89226 * 17 15 2 19 19 C 1.37959 * 119.85245 * 179.97438 * 18 17 15 20 20 C 1.38362 * 120.14323 * 359.97438 * 19 18 17 21 21 C 1.38356 * 120.29434 * 0.02562 * 20 19 18 22 22 C 1.37961 * 120.14245 * 359.97438 * 21 20 19 23 23 H 1.08992 * 109.47314 * 265.52684 * 1 2 3 24 24 H 1.09000 * 109.46801 * 25.52738 * 1 2 3 25 25 H 1.09003 * 109.47225 * 145.52315 * 1 2 3 26 26 H 1.08999 * 109.46898 * 29.99746 * 3 2 1 27 27 H 1.09004 * 109.47730 * 149.99374 * 3 2 1 28 28 H 0.96997 * 119.99780 * 359.97438 * 6 4 3 29 29 H 0.96995 * 120.00033 * 179.97438 * 10 9 7 30 30 H 1.08001 * 120.07334 * 359.70869 * 18 17 15 31 31 H 1.08001 * 119.92744 * 180.02562 * 19 18 17 32 32 H 1.07999 * 119.84726 * 179.97438 * 20 19 18 33 33 H 1.07996 * 119.92629 * 180.02562 * 21 20 19 34 34 H 1.08002 * 120.06762 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 8 2.0550 1.0210 -2.3427 6 7 3.1118 2.8510 -1.6671 7 6 3.3407 3.2465 -2.9596 8 1 2.9901 2.6385 -3.7805 9 6 4.0238 4.4296 -3.2134 10 7 4.4509 5.1691 -2.2147 11 14 4.3364 4.9681 -4.9747 12 1 3.2067 5.8108 -5.4424 13 1 5.5967 5.7511 -5.0366 14 1 4.4543 3.7706 -5.8450 15 6 2.1388 -1.1672 -0.0005 16 8 3.3511 -1.1692 0.0885 17 6 1.4036 -2.4453 -0.1093 18 6 0.1896 -2.6145 0.5583 19 6 -0.4917 -3.8094 0.4522 20 6 0.0256 -4.8385 -0.3144 21 6 1.2285 -4.6772 -0.9788 22 6 1.9198 -3.4874 -0.8810 23 1 -0.3633 -0.0801 1.0244 24 1 -0.3633 0.9274 -0.4429 25 1 -0.3634 -0.8472 -0.5817 26 1 1.6085 2.0283 0.5138 27 1 3.1499 1.1384 0.5139 28 1 3.4270 3.3968 -0.9298 29 1 4.9281 5.9947 -2.3919 30 1 -0.2133 -1.8133 1.1602 31 1 -1.4314 -3.9415 0.9680 32 1 -0.5116 -5.7720 -0.3938 33 1 1.6266 -5.4843 -1.5758 34 1 2.8589 -3.3630 -1.3998 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126774334.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:41 Heat of formation + Delta-G solvation = -56.706810 kcal Electronic energy + Delta-G solvation = -19050.194642 eV Core-core repulsion = 15947.540495 eV Total energy + Delta-G solvation = -3102.654147 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55720 -40.07136 -39.04341 -36.71087 -35.90037 -33.38433 -32.46920 -31.91315 -29.70372 -27.75077 -26.61844 -24.17429 -23.45268 -21.68140 -20.62647 -19.90159 -18.45653 -18.07593 -17.65276 -17.13352 -16.67813 -16.14541 -15.92535 -15.64288 -15.45394 -15.19378 -14.54691 -14.46517 -14.30294 -13.83454 -13.62193 -13.54930 -13.29476 -12.99973 -12.72558 -12.52704 -12.47980 -12.15951 -11.94003 -11.56306 -11.04667 -10.76627 -10.07658 -9.95023 -9.86130 -9.63237 -8.50870 -6.00784 -0.01110 0.43257 1.34482 1.38364 1.50011 1.57141 1.95642 2.01474 2.28421 2.86125 3.13944 3.22123 3.47938 3.92914 4.01956 4.17934 4.21378 4.25686 4.33349 4.42554 4.50495 4.56334 4.65171 4.85853 4.89128 5.08299 5.28733 5.36080 5.41851 5.45493 5.52459 5.93027 5.99092 6.27988 6.52308 7.00479 7.07254 7.47515 8.02266 8.66080 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.037375 B = 0.004216 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.975730 B = 6639.856799 C = 6874.866759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.588 5.588 3 C 0.112 3.888 4 C 0.420 3.580 5 O -0.629 6.629 6 N -0.566 5.566 7 C -0.338 4.338 8 H 0.076 0.924 9 C -0.010 4.010 10 N -0.917 5.917 11 Si 0.994 3.006 12 H -0.266 1.266 13 H -0.269 1.269 14 H -0.277 1.277 15 C 0.551 3.449 16 O -0.590 6.590 17 C -0.149 4.149 18 C -0.093 4.093 19 C -0.122 4.122 20 C -0.094 4.094 21 C -0.129 4.129 22 C -0.096 4.096 23 H 0.103 0.897 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.140 0.860 27 H 0.098 0.902 28 H 0.398 0.602 29 H 0.280 0.720 30 H 0.157 0.843 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.148 0.852 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.736 -14.229 8.666 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.318 5.318 3 C -0.015 4.015 4 C 0.207 3.793 5 O -0.517 6.517 6 N -0.203 5.203 7 C -0.467 4.467 8 H 0.094 0.906 9 C -0.210 4.210 10 N -0.557 5.557 11 Si 0.818 3.182 12 H -0.191 1.191 13 H -0.193 1.193 14 H -0.202 1.202 15 C 0.341 3.659 16 O -0.471 6.471 17 C -0.152 4.152 18 C -0.111 4.111 19 C -0.139 4.139 20 C -0.111 4.111 21 C -0.147 4.147 22 C -0.115 4.115 23 H 0.121 0.879 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.157 0.843 27 H 0.116 0.884 28 H 0.232 0.768 29 H 0.089 0.911 30 H 0.174 0.826 31 H 0.185 0.815 32 H 0.180 0.820 33 H 0.166 0.834 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.283 -14.458 8.125 20.638 hybrid contribution 1.007 0.959 -0.775 1.591 sum -11.277 -13.499 7.350 19.063 Atomic orbital electron populations 1.22412 0.76746 1.04223 1.03522 1.47365 1.08652 1.04232 1.71507 1.21208 1.00160 0.86960 0.93172 1.21357 0.82874 0.82526 0.92568 1.90478 1.57234 1.56171 1.47773 1.41895 1.49559 1.20452 1.08404 1.19647 1.35903 1.06314 0.84861 0.90607 1.26068 0.95703 0.95430 1.03828 1.69665 1.38157 1.14988 1.32923 0.84916 0.78373 0.78115 0.76832 1.19062 1.19341 1.20156 1.19055 0.86717 0.85108 0.74987 1.90718 1.16060 1.88131 1.52202 1.19842 0.98076 0.93273 1.03982 1.21903 0.91749 0.99764 0.97678 1.21581 1.01199 0.91989 0.99136 1.21810 0.94629 1.00318 0.94392 1.21385 0.96153 0.96465 1.00681 1.21262 0.99355 0.93533 0.97315 0.87917 0.90998 0.90263 0.84277 0.88372 0.76772 0.91088 0.82563 0.81519 0.82035 0.83443 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.71 8.88 127.77 1.13 2.84 16 2 N -0.59 -20.33 2.36 -854.59 -2.02 -22.34 16 3 C 0.11 4.19 5.90 85.63 0.51 4.69 16 4 C 0.42 21.25 7.85 87.66 0.69 21.94 16 5 O -0.63 -36.86 16.01 -3.05 -0.05 -36.91 16 6 N -0.57 -30.37 5.29 -306.98 -1.62 -31.99 16 7 C -0.34 -19.88 9.68 84.04 0.81 -19.07 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 10 N -0.92 -50.38 13.05 21.66 0.28 -50.09 16 11 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 13 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 15 C 0.55 21.47 7.35 86.78 0.64 22.10 16 16 O -0.59 -28.27 16.47 -3.89 -0.06 -28.34 16 17 C -0.15 -4.56 5.24 -20.09 -0.11 -4.66 16 18 C -0.09 -1.89 7.56 22.53 0.17 -1.72 16 19 C -0.12 -1.77 10.03 22.23 0.22 -1.55 16 20 C -0.09 -1.40 10.04 22.33 0.22 -1.18 16 21 C -0.13 -2.67 10.03 22.23 0.22 -2.45 16 22 C -0.10 -2.86 9.63 22.53 0.22 -2.64 16 23 H 0.10 1.48 6.89 -2.39 -0.02 1.47 16 24 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 25 H 0.08 1.84 5.81 -2.39 -0.01 1.83 16 26 H 0.14 3.92 8.07 -2.39 -0.02 3.90 16 27 H 0.10 3.78 7.36 -2.38 -0.02 3.77 16 28 H 0.40 20.10 7.90 -92.71 -0.73 19.37 16 29 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.16 2.37 5.31 -2.91 -0.02 2.35 16 31 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 32 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.10 3.49 8.05 -2.91 -0.02 3.46 16 Total: -1.00 -81.59 298.82 4.16 -77.43 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.40 Total: 28.12 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 5.20 Total: 18.22 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -3.36 Total: -104.43 kcal Atomic # 8 Polarization: -65.14 SS G_CDS: -0.11 Total: -65.25 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -81.59 4.16 -77.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126774334.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.723 kcal (2) G-P(sol) polarization free energy of solvation -81.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds