Wall clock time and date at job start Mon Mar 30 2020 04:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47048 * 2 1 4 4 N 1.46495 * 109.47312 * 179.97438 * 3 2 1 5 5 S 1.65607 * 120.00449 * 163.96492 * 4 3 2 6 6 O 1.42094 * 106.40107 * 175.67206 * 5 4 3 7 7 O 1.42101 * 106.39615 * 308.58962 * 5 4 3 8 8 N 1.65600 * 107.21623 * 62.13014 * 5 4 3 9 9 C 1.46501 * 119.99987 * 84.43226 * 8 5 4 10 10 C 1.50697 * 109.46817 * 95.19519 * 9 8 5 11 11 H 1.08000 * 120.00561 * 5.04494 * 10 9 8 12 12 C 1.37882 * 120.00100 * 185.04166 * 10 9 8 13 13 N 1.31510 * 120.00443 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99707 * 0.02562 * 12 10 9 15 15 H 1.48508 * 109.47121 * 89.99995 * 14 12 10 16 16 H 1.48492 * 109.47191 * 209.99909 * 14 12 10 17 17 H 1.48506 * 109.47260 * 330.00000 * 14 12 10 18 18 C 1.46502 * 119.99835 * 264.43030 * 8 5 4 19 19 C 1.52995 * 117.49731 * 188.74906 * 18 8 5 20 20 C 1.52998 * 117.49613 * 120.08958 * 18 8 5 21 21 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47296 * 300.00470 * 1 2 3 23 23 H 1.09005 * 109.47255 * 60.00422 * 1 2 3 24 24 H 1.08995 * 109.47185 * 239.99761 * 2 1 3 25 25 H 1.08998 * 109.46659 * 119.99349 * 2 1 3 26 26 H 1.09004 * 109.47456 * 59.99628 * 3 2 1 27 27 H 1.09000 * 109.47130 * 299.99698 * 3 2 1 28 28 H 0.97003 * 120.00165 * 343.96279 * 4 3 2 29 29 H 1.08995 * 109.47277 * 215.19417 * 9 8 5 30 30 H 1.08999 * 109.47213 * 335.20013 * 9 8 5 31 31 H 0.96996 * 120.00048 * 180.02562 * 13 12 10 32 32 H 1.09000 * 115.55029 * 334.41646 * 18 8 5 33 33 H 1.09008 * 117.49955 * 0.02562 * 19 18 8 34 34 H 1.09001 * 117.49963 * 145.01920 * 19 18 8 35 35 H 1.08995 * 117.49760 * 214.97648 * 20 18 8 36 36 H 1.09000 * 117.50309 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 16 4.3331 2.8209 -0.3954 6 8 5.7108 2.5300 -0.2041 7 8 3.7979 3.2688 -1.6332 8 7 3.9374 3.9706 0.7288 9 6 4.6551 4.0251 2.0048 10 6 5.7761 5.0277 1.9081 11 1 5.8879 5.6286 1.0177 12 6 6.6590 5.1779 2.9564 13 7 7.6369 6.0532 2.8723 14 14 6.4661 4.1382 4.4962 15 1 7.2444 2.8823 4.3463 16 1 6.9690 4.8949 5.6707 17 1 5.0314 3.8106 4.6959 18 6 2.8695 4.9332 0.4473 19 6 2.6870 6.0928 1.4286 20 6 1.6675 4.9515 1.3937 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 1.8933 -0.5138 -0.8899 25 1 1.8932 -0.5137 0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.9899 0.6353 0.2330 29 1 3.9676 4.3240 2.7960 30 1 5.0661 3.0416 2.2328 31 1 8.2582 6.1586 3.6096 32 1 2.6825 5.1327 -0.6078 33 1 3.3618 6.1397 2.2835 34 1 2.3795 7.0550 1.0192 35 1 0.6897 5.1634 0.9613 36 1 1.6709 4.2471 2.2255 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126930247.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:08 Heat of formation + Delta-G solvation = -54.924958 kcal Electronic energy + Delta-G solvation = -18969.165127 eV Core-core repulsion = 16002.032198 eV Total energy + Delta-G solvation = -2967.132929 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -37.66442 -36.71096 -36.19986 -35.21830 -33.32349 -32.09782 -31.83344 -27.67044 -25.64945 -22.71632 -22.00520 -21.67583 -20.74604 -18.70302 -17.56776 -17.03068 -16.60812 -16.13459 -15.50249 -15.15056 -14.47169 -14.20023 -13.88143 -13.18462 -12.89041 -12.82429 -12.59300 -12.27147 -12.03635 -11.58731 -11.52640 -11.49846 -11.32162 -11.20139 -11.09661 -10.93957 -10.92264 -10.76078 -10.47047 -10.04146 -9.82161 -9.48345 -9.31318 -8.59462 -7.96042 -6.08200 -4.06855 1.14633 3.24766 3.30167 3.32482 3.41617 4.06295 4.32449 4.37333 4.69553 4.85590 4.93859 5.07642 5.20062 5.36247 5.40134 5.43351 5.44656 5.52330 5.56063 5.73737 5.83366 5.89411 5.99235 6.03308 6.20012 6.36621 6.51869 6.68459 6.80121 7.00225 7.17605 7.44858 7.56514 8.49425 8.99249 9.50901 11.05303 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.007291 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.076188 B = 3839.662005 C = 3935.991798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.120 3.880 4 N -1.136 6.136 5 S 2.786 3.214 6 O -0.961 6.961 7 O -0.994 6.994 8 N -0.959 5.959 9 C 0.227 3.773 10 C -0.525 4.525 11 H 0.080 0.920 12 C 0.074 3.926 13 N -0.893 5.893 14 Si 0.869 3.131 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.266 1.266 18 C 0.088 3.912 19 C -0.165 4.165 20 C -0.208 4.208 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.411 0.589 29 H 0.033 0.967 30 H 0.027 0.973 31 H 0.265 0.735 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.042 -9.278 -2.679 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C -0.006 4.006 4 N -0.895 5.895 5 S 2.794 3.206 6 O -0.945 6.945 7 O -0.977 6.977 8 N -0.797 5.797 9 C 0.104 3.896 10 C -0.565 4.565 11 H 0.098 0.902 12 C -0.129 4.129 13 N -0.531 5.531 14 Si 0.695 3.305 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.191 1.191 18 C -0.020 4.020 19 C -0.204 4.204 20 C -0.248 4.248 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.244 0.756 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.355 -8.944 -3.380 17.248 hybrid contribution 0.061 -0.866 1.410 1.656 sum -14.294 -9.810 -1.970 17.449 Atomic orbital electron populations 1.21715 0.95028 1.01876 1.02277 1.21716 0.96374 0.96184 1.02720 1.21239 0.79322 0.98080 1.02007 1.56231 1.15404 1.29775 1.88111 1.01862 0.73012 0.72536 0.73163 1.93662 1.30608 1.84179 1.86008 1.93523 1.81003 1.81235 1.41968 1.57144 1.45744 1.43257 1.33601 1.19413 0.92015 0.97555 0.80602 1.21334 1.10312 1.20629 1.04176 0.90192 1.24858 0.94739 0.95051 0.98218 1.69886 1.16020 1.34848 1.32390 0.86980 0.78934 0.81143 0.83402 1.19856 1.20952 1.19101 1.21285 0.89015 0.95334 0.96403 1.23276 1.01495 0.92560 1.03054 1.23416 0.94299 1.03458 1.03597 0.92493 0.92371 0.92354 0.91332 0.91417 0.91813 0.90718 0.75589 0.94923 0.95519 0.92546 0.85288 0.86349 0.88926 0.88982 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.13 -1.19 6.08 -26.73 -0.16 -1.36 16 3 C 0.12 1.41 6.26 -4.05 -0.03 1.38 16 4 N -1.14 -16.18 6.05 -10.62 -0.06 -16.25 16 5 S 2.79 54.07 6.04 -107.50 -0.65 53.43 16 6 O -0.96 -22.75 17.31 -57.17 -0.99 -23.74 16 7 O -0.99 -20.41 16.38 -57.17 -0.94 -21.34 16 8 N -0.96 -19.17 3.16 -108.58 -0.34 -19.52 16 9 C 0.23 5.23 3.45 -5.19 -0.02 5.21 16 10 C -0.53 -14.68 9.26 -34.44 -0.32 -14.99 16 11 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 12 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 13 N -0.89 -27.26 13.96 55.43 0.77 -26.49 16 14 Si 0.87 20.91 27.37 -169.99 -4.65 16.26 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -5.93 6.69 56.52 0.38 -5.55 16 18 C 0.09 1.51 6.37 -67.93 -0.43 1.08 16 19 C -0.16 -2.74 9.62 -26.70 -0.26 -2.99 16 20 C -0.21 -2.90 10.12 -26.69 -0.27 -3.17 16 21 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.89 7.80 -51.93 -0.41 0.48 16 28 H 0.41 5.08 8.66 -34.47 -0.30 4.78 16 29 H 0.03 0.72 5.98 -51.93 -0.31 0.41 16 30 H 0.03 0.62 6.91 -51.93 -0.36 0.26 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.13 2.13 7.33 -51.93 -0.38 1.75 16 33 H 0.12 2.30 6.14 -51.92 -0.32 1.98 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 LS Contribution 310.10 15.07 4.67 4.67 Total: -1.00 -33.89 310.10 -8.86 -42.75 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.45 Total: 3.84 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -1.21 Total: -13.61 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: 0.37 Total: -62.25 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.93 Total: -45.09 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.65 Total: 16.26 kcal Atomic # 16 Polarization: 54.07 SS G_CDS: -0.65 Total: 53.43 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.89 -8.86 -42.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126930247.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.178 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds