Wall clock time and date at job start Mon Mar 30 2020 04:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47048 * 2 1 4 4 N 1.46495 * 109.47312 * 179.97438 * 3 2 1 5 5 S 1.65607 * 120.00449 * 163.96492 * 4 3 2 6 6 O 1.42094 * 106.40107 * 175.67206 * 5 4 3 7 7 O 1.42101 * 106.39615 * 308.58962 * 5 4 3 8 8 N 1.65600 * 107.21623 * 62.13014 * 5 4 3 9 9 C 1.46501 * 119.99987 * 84.43226 * 8 5 4 10 10 C 1.50697 * 109.46817 * 95.19519 * 9 8 5 11 11 H 1.08000 * 120.00561 * 5.04494 * 10 9 8 12 12 C 1.37882 * 120.00100 * 185.04166 * 10 9 8 13 13 N 1.31510 * 120.00443 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99707 * 0.02562 * 12 10 9 15 15 H 1.48508 * 109.47121 * 89.99995 * 14 12 10 16 16 H 1.48492 * 109.47191 * 209.99909 * 14 12 10 17 17 H 1.48506 * 109.47260 * 330.00000 * 14 12 10 18 18 C 1.46502 * 119.99835 * 264.43030 * 8 5 4 19 19 C 1.52995 * 117.49731 * 188.74906 * 18 8 5 20 20 C 1.52998 * 117.49613 * 120.08958 * 18 8 5 21 21 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47296 * 300.00470 * 1 2 3 23 23 H 1.09005 * 109.47255 * 60.00422 * 1 2 3 24 24 H 1.08995 * 109.47185 * 239.99761 * 2 1 3 25 25 H 1.08998 * 109.46659 * 119.99349 * 2 1 3 26 26 H 1.09004 * 109.47456 * 59.99628 * 3 2 1 27 27 H 1.09000 * 109.47130 * 299.99698 * 3 2 1 28 28 H 0.97003 * 120.00165 * 343.96279 * 4 3 2 29 29 H 1.08995 * 109.47277 * 215.19417 * 9 8 5 30 30 H 1.08999 * 109.47213 * 335.20013 * 9 8 5 31 31 H 0.96996 * 120.00048 * 180.02562 * 13 12 10 32 32 H 1.09000 * 115.55029 * 334.41646 * 18 8 5 33 33 H 1.09008 * 117.49955 * 0.02562 * 19 18 8 34 34 H 1.09001 * 117.49963 * 145.01920 * 19 18 8 35 35 H 1.08995 * 117.49760 * 214.97648 * 20 18 8 36 36 H 1.09000 * 117.50309 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 16 4.3331 2.8209 -0.3954 6 8 5.7108 2.5300 -0.2041 7 8 3.7979 3.2688 -1.6332 8 7 3.9374 3.9706 0.7288 9 6 4.6551 4.0251 2.0048 10 6 5.7761 5.0277 1.9081 11 1 5.8879 5.6286 1.0177 12 6 6.6590 5.1779 2.9564 13 7 7.6369 6.0532 2.8723 14 14 6.4661 4.1382 4.4962 15 1 7.2444 2.8823 4.3463 16 1 6.9690 4.8949 5.6707 17 1 5.0314 3.8106 4.6959 18 6 2.8695 4.9332 0.4473 19 6 2.6870 6.0928 1.4286 20 6 1.6675 4.9515 1.3937 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 1.8933 -0.5138 -0.8899 25 1 1.8932 -0.5137 0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.9899 0.6353 0.2330 29 1 3.9676 4.3240 2.7960 30 1 5.0661 3.0416 2.2328 31 1 8.2582 6.1586 3.6096 32 1 2.6825 5.1327 -0.6078 33 1 3.3618 6.1397 2.2835 34 1 2.3795 7.0550 1.0192 35 1 0.6897 5.1634 0.9613 36 1 1.6709 4.2471 2.2255 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126930247.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:07 Heat of formation + Delta-G solvation = -81.272121 kcal Electronic energy + Delta-G solvation = -18970.307625 eV Core-core repulsion = 16002.032198 eV Total energy + Delta-G solvation = -2968.275427 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.07403 -38.32022 -37.21228 -36.88622 -35.17709 -33.67398 -32.97933 -29.58800 -26.50644 -24.60068 -23.15387 -22.52057 -22.23177 -20.15131 -19.16616 -18.92595 -18.22769 -17.51382 -16.71350 -16.27756 -16.03281 -15.76979 -15.30097 -14.72042 -14.18674 -13.96685 -13.74014 -13.64677 -13.60297 -13.20473 -13.16545 -12.98276 -12.88657 -12.55471 -12.42534 -12.37312 -12.06302 -11.88996 -11.78349 -11.70610 -11.50750 -11.10993 -10.76739 -10.44679 -9.51075 -8.27004 -6.31313 -0.37094 1.34944 1.38706 1.46592 1.96980 2.34995 2.61547 3.04821 3.07566 3.39099 3.93749 3.98183 4.12316 4.14437 4.25800 4.32736 4.33260 4.58269 4.76169 4.77016 4.83903 4.92287 4.99648 5.08897 5.20219 5.22438 5.33316 5.39902 5.48152 5.48991 5.52727 5.80839 6.14286 6.34007 6.72021 7.30538 8.90610 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.007291 C = 0.007112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.076188 B = 3839.662005 C = 3935.991798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.111 3.889 4 N -1.119 6.119 5 S 2.799 3.201 6 O -1.012 7.012 7 O -1.010 7.010 8 N -0.966 5.966 9 C 0.237 3.763 10 C -0.529 4.529 11 H 0.029 0.971 12 C 0.008 3.992 13 N -0.948 5.948 14 Si 0.938 3.062 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.229 1.229 18 C 0.056 3.944 19 C -0.183 4.183 20 C -0.163 4.163 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.422 0.578 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.266 0.734 32 H 0.133 0.867 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.112 -11.240 -1.399 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.015 4.015 4 N -0.883 5.883 5 S 2.808 3.192 6 O -0.996 6.996 7 O -0.993 6.993 8 N -0.803 5.803 9 C 0.112 3.888 10 C -0.568 4.568 11 H 0.047 0.953 12 C -0.190 4.190 13 N -0.588 5.588 14 Si 0.760 3.240 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.152 1.152 18 C -0.051 4.051 19 C -0.222 4.222 20 C -0.202 4.202 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.258 0.742 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.147 0.853 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.463 -10.905 -2.121 20.697 hybrid contribution 0.974 -0.210 0.880 1.329 sum -16.489 -11.115 -1.241 19.924 Atomic orbital electron populations 1.21714 0.93634 1.02769 1.02621 1.21714 0.97440 0.94230 1.03226 1.21567 0.77173 1.00216 1.02534 1.55768 1.16652 1.28177 1.87712 1.01175 0.72039 0.73105 0.72897 1.93588 1.34320 1.85093 1.86612 1.93493 1.80967 1.81991 1.42849 1.57006 1.46442 1.44524 1.32369 1.19155 0.91001 0.96007 0.82595 1.21591 1.12054 1.20928 1.02271 0.95307 1.25877 0.94238 0.96498 1.02366 1.70065 1.17568 1.37308 1.33906 0.85875 0.81028 0.78818 0.78301 1.19674 1.20531 1.15205 1.21582 0.90411 0.95776 0.97316 1.23256 1.02840 0.94150 1.01943 1.23501 0.94278 1.00629 1.01780 0.91372 0.91809 0.92272 0.91261 0.90588 0.90613 0.90947 0.74233 0.92814 0.94994 0.92489 0.85000 0.89554 0.87321 0.85270 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.03 16 2 C -0.13 -1.90 6.08 30.59 0.19 -1.71 16 3 C 0.11 2.26 6.26 86.38 0.54 2.80 16 4 N -1.12 -29.75 6.05 -187.50 -1.13 -30.88 16 5 S 2.80 108.06 6.04 -56.49 -0.34 107.72 16 6 O -1.01 -48.97 17.31 -128.00 -2.22 -51.18 16 7 O -1.01 -41.35 16.38 -128.00 -2.10 -43.44 16 8 N -0.97 -38.04 3.16 -497.43 -1.57 -39.62 16 9 C 0.24 10.71 3.45 85.63 0.30 11.01 16 10 C -0.53 -30.47 9.26 25.60 0.24 -30.23 16 11 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 12 C 0.01 0.45 5.47 84.66 0.46 0.92 16 13 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 14 Si 0.94 42.68 27.37 68.60 1.88 44.56 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.23 -9.01 6.69 99.48 0.67 -8.34 16 18 C 0.06 1.86 6.37 44.99 0.29 2.15 16 19 C -0.18 -5.85 9.62 30.62 0.29 -5.56 16 20 C -0.16 -3.94 10.12 30.62 0.31 -3.63 16 21 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.53 7.80 -2.39 -0.02 1.52 16 28 H 0.42 9.59 8.66 -96.74 -0.84 8.75 16 29 H 0.05 2.22 5.98 -2.39 -0.01 2.21 16 30 H 0.03 1.43 6.91 -2.39 -0.02 1.41 16 31 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.13 4.24 7.33 -2.39 -0.02 4.22 16 33 H 0.09 3.35 6.14 -2.38 -0.01 3.34 16 34 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.10 2.31 8.05 -2.39 -0.02 2.29 16 Total: -1.00 -76.80 310.10 -1.67 -78.46 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.19 Total: 19.51 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 3.33 Total: -25.29 kcal Atomic # 7 Polarization: -127.93 SS G_CDS: -2.41 Total: -130.34 kcal Atomic # 8 Polarization: -90.31 SS G_CDS: -4.31 Total: -94.62 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.88 Total: 44.56 kcal Atomic # 16 Polarization: 108.06 SS G_CDS: -0.34 Total: 107.72 kcal Total: -76.80 -1.67 -78.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126930247.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.809 kcal (2) G-P(sol) polarization free energy of solvation -76.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds