Wall clock time and date at job start Mon Mar 30 2020 05:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47367 * 2 1 4 4 S 1.65596 * 120.00191 * 164.99793 * 3 2 1 5 5 O 1.42094 * 106.40078 * 311.45837 * 4 3 2 6 6 O 1.42101 * 106.40156 * 178.53843 * 4 3 2 7 7 N 1.65600 * 107.21713 * 65.00142 * 4 3 2 8 8 C 1.36944 * 119.99789 * 269.99603 * 7 4 3 9 9 H 1.07998 * 119.99662 * 129.87744 * 8 7 4 10 10 C 1.38810 * 119.99854 * 309.88377 * 8 7 4 11 11 N 1.31617 * 120.00455 * 334.61031 * 10 8 7 12 12 Si 1.86804 * 119.99767 * 154.61480 * 10 8 7 13 13 H 1.48505 * 109.47056 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47301 * 119.99895 * 12 10 8 15 15 H 1.48505 * 109.46959 * 239.99939 * 12 10 8 16 16 C 1.46498 * 120.00406 * 90.00108 * 7 4 3 17 17 C 1.54265 * 110.03136 * 241.51512 * 16 7 4 18 18 C 1.54962 * 104.16188 * 217.13411 * 17 16 7 19 19 C 1.54888 * 102.77797 * 37.88844 * 18 17 16 20 20 C 1.53876 * 110.03241 * 124.29692 * 16 7 4 21 21 H 1.08995 * 109.47088 * 300.00599 * 1 2 3 22 22 H 1.09003 * 109.46796 * 60.00339 * 1 2 3 23 23 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47471 * 240.00011 * 2 1 3 25 25 H 1.09003 * 109.46796 * 119.99661 * 2 1 3 26 26 H 0.97002 * 119.99208 * 344.99614 * 3 2 1 27 27 H 0.96996 * 120.00455 * 175.22660 * 11 10 8 28 28 H 1.09002 * 110.01727 * 2.90629 * 16 7 4 29 29 H 1.08997 * 110.48662 * 335.78374 * 17 16 7 30 30 H 1.08999 * 110.48321 * 98.42524 * 17 16 7 31 31 H 1.09007 * 110.71882 * 279.57892 * 18 17 16 32 32 H 1.08999 * 110.92495 * 156.29950 * 18 17 16 33 33 H 1.08996 * 110.49030 * 203.40978 * 19 18 17 34 34 H 1.09006 * 110.59857 * 80.81456 * 19 18 17 35 35 H 1.09002 * 110.02976 * 238.56690 * 20 16 7 36 36 H 1.08996 * 110.03626 * 0.02562 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6004 1.7001 0.3712 5 8 3.8848 0.9833 1.5647 6 8 3.7651 3.1064 0.2512 7 7 4.5299 1.0174 -0.8171 8 6 4.9712 -0.2723 -0.6852 9 1 4.8292 -0.9767 -1.4914 10 6 5.6007 -0.6742 0.4849 11 7 6.2179 0.2115 1.2378 12 14 5.5719 -2.4722 0.9908 13 1 4.8181 -3.2585 -0.0186 14 1 6.9631 -2.9839 1.0794 15 1 4.9109 -2.6035 2.3142 16 6 4.8804 1.7930 -2.0095 17 6 4.3069 1.1128 -3.2697 18 6 5.3973 1.3324 -4.3486 19 6 6.7116 1.1681 -3.5457 20 6 6.4087 1.8285 -2.1848 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 1.4150 2.1089 -0.2175 27 1 6.5979 -0.0563 2.0892 28 1 4.4909 2.8073 -1.9226 29 1 4.1545 0.0482 -3.0927 30 1 3.3726 1.5884 -3.5682 31 1 5.3255 2.3348 -4.7711 32 1 5.3267 0.5785 -5.1326 33 1 7.5313 1.6837 -4.0459 34 1 6.9504 0.1128 -3.4128 35 1 6.7607 2.8601 -2.1839 36 1 6.8897 1.2683 -1.3830 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126973931.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:49 Heat of formation + Delta-G solvation = -84.332998 kcal Electronic energy + Delta-G solvation = -19752.551413 eV Core-core repulsion = 16784.143256 eV Total energy + Delta-G solvation = -2968.408157 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -37.76021 -35.72802 -34.89516 -34.19034 -33.78519 -31.19923 -28.94383 -27.87805 -26.76412 -24.05210 -22.18073 -20.05869 -19.28138 -18.86528 -17.51881 -16.01990 -15.76569 -15.24382 -14.77101 -14.57466 -14.30785 -14.03119 -13.45213 -12.80930 -12.59175 -12.45636 -11.90425 -11.66205 -11.44262 -11.26973 -11.17662 -11.03883 -10.68712 -10.52316 -10.46227 -10.37560 -10.29586 -10.26449 -10.20947 -10.07115 -9.67358 -9.57027 -8.64692 -8.44816 -7.52592 -6.33410 -4.01721 2.19987 3.28640 3.35754 3.39874 4.26703 4.50314 5.05057 5.07225 5.36177 5.41180 5.54010 5.55117 5.60026 5.70313 6.08721 6.14033 6.21161 6.22051 6.24304 6.32696 6.42047 6.45552 6.47657 6.53366 6.55298 6.72212 6.87773 6.99546 7.02709 7.31001 7.59358 7.74821 8.00248 8.42734 9.12047 9.54599 10.73853 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.012435 C = 0.009245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.143633 B = 2251.225826 C = 3027.949867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 N -1.149 6.149 4 S 2.701 3.299 5 O -0.967 6.967 6 O -1.034 7.034 7 N -0.829 5.829 8 C -0.303 4.303 9 H 0.077 0.923 10 C 0.067 3.933 11 N -0.800 5.800 12 Si 0.906 3.094 13 H -0.267 1.267 14 H -0.284 1.284 15 H -0.277 1.277 16 C 0.153 3.847 17 C -0.133 4.133 18 C -0.122 4.122 19 C -0.116 4.116 20 C -0.122 4.122 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.391 0.609 27 H 0.273 0.727 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 -1.146 -7.043 8.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.000 4.000 3 N -0.902 5.902 4 S 2.722 3.278 5 O -0.949 6.949 6 O -1.019 7.019 7 N -0.658 5.658 8 C -0.443 4.443 9 H 0.095 0.905 10 C -0.148 4.148 11 N -0.435 5.435 12 Si 0.732 3.268 13 H -0.191 1.191 14 H -0.210 1.210 15 H -0.203 1.203 16 C 0.044 3.956 17 C -0.172 4.172 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.161 4.161 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.219 0.781 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.751 -0.655 -5.997 7.679 hybrid contribution -0.494 -0.629 0.039 0.801 sum -5.246 -1.283 -5.957 8.041 Atomic orbital electron populations 1.22003 0.96296 1.01724 1.01635 1.20925 0.93700 0.83488 1.01889 1.57063 1.32064 1.12260 1.88787 1.06914 0.71985 0.72642 0.76214 1.93472 1.82346 1.73145 1.45924 1.93374 1.86131 1.34217 1.88133 1.53022 1.56444 1.22285 1.34094 1.18707 1.36151 0.85684 1.03803 0.90494 1.25536 0.92346 0.99125 0.97829 1.69916 1.26095 1.36253 1.11208 0.86248 0.77816 0.83515 0.79256 1.19132 1.21014 1.20265 1.21307 0.94781 0.93471 0.85994 1.22774 0.96865 1.02406 0.95198 1.22437 0.96097 1.00190 0.97263 1.22264 0.96180 1.00921 0.96034 1.22364 0.96385 0.99475 0.97914 0.92711 0.92767 0.92047 0.92192 0.91274 0.78051 0.91649 0.91091 0.90249 0.93121 0.92481 0.92617 0.93176 0.91655 0.93455 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 10.05 37.16 0.37 -1.73 16 2 C 0.13 2.22 6.97 -4.04 -0.03 2.19 16 3 N -1.15 -22.37 6.05 -10.61 -0.06 -22.43 16 4 S 2.70 66.59 5.91 -107.50 -0.63 65.96 16 5 O -0.97 -27.11 13.81 -57.17 -0.79 -27.90 16 6 O -1.03 -27.64 16.70 -57.17 -0.95 -28.59 16 7 N -0.83 -19.52 2.71 -52.34 -0.14 -19.66 16 8 C -0.30 -7.37 7.54 -15.06 -0.11 -7.48 16 9 H 0.08 1.80 6.93 -52.49 -0.36 1.43 16 10 C 0.07 1.74 3.98 -17.43 -0.07 1.67 16 11 N -0.80 -22.29 11.75 55.49 0.65 -21.64 16 12 Si 0.91 20.28 29.63 -169.99 -5.04 15.24 16 13 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C 0.15 3.19 3.30 -66.81 -0.22 2.97 16 17 C -0.13 -2.32 6.43 -25.03 -0.16 -2.48 16 18 C -0.12 -1.84 6.91 -24.70 -0.17 -2.01 16 19 C -0.12 -1.93 6.83 -25.07 -0.17 -2.10 16 20 C -0.12 -2.46 6.25 -25.61 -0.16 -2.62 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.07 1.33 7.75 -51.93 -0.40 0.93 16 26 H 0.39 6.69 8.65 -34.47 -0.30 6.39 16 27 H 0.27 7.35 8.32 -40.82 -0.34 7.01 16 28 H 0.07 1.52 6.91 -51.93 -0.36 1.16 16 29 H 0.08 1.45 6.58 -51.93 -0.34 1.11 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 2.26 7.20 -51.93 -0.37 1.88 16 LS Contribution 299.89 15.07 4.52 4.52 Total: -1.00 -30.67 299.89 -8.67 -39.35 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.50 Total: 6.75 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -0.72 Total: -11.58 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: 0.45 Total: -63.74 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -1.74 Total: -56.49 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.04 Total: 15.24 kcal Atomic # 16 Polarization: 66.59 SS G_CDS: -0.63 Total: 65.96 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.67 -8.67 -39.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126973931.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.988 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds