Wall clock time and date at job start Mon Mar 30 2020 04:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 5 5 S 1.65599 * 119.99913 * 95.00258 * 4 2 1 6 6 O 1.42098 * 106.40463 * 178.53804 * 5 4 2 7 7 O 1.42103 * 106.40366 * 311.46058 * 5 4 2 8 8 N 1.65605 * 107.21700 * 64.99803 * 5 4 2 9 9 C 1.46501 * 119.99993 * 269.99874 * 8 5 4 10 10 C 1.50703 * 109.47196 * 95.00128 * 9 8 5 11 11 H 1.08004 * 119.99863 * 0.02562 * 10 9 8 12 12 C 1.37869 * 120.00323 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00100 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00314 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46683 * 60.00002 * 14 12 10 16 16 H 1.48497 * 109.47495 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47252 * 300.00755 * 14 12 10 18 18 C 1.46501 * 119.99970 * 90.00051 * 8 5 4 19 19 C 1.52997 * 117.49886 * 188.74476 * 18 8 5 20 20 C 1.53002 * 117.49575 * 120.08704 * 18 8 5 21 21 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 22 22 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 24 24 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 25 25 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 27 27 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 28 28 H 0.96992 * 120.00053 * 275.00239 * 4 2 1 29 29 H 1.08997 * 109.47302 * 214.99755 * 9 8 5 30 30 H 1.09003 * 109.47210 * 335.00032 * 9 8 5 31 31 H 0.97000 * 120.00108 * 180.02562 * 13 12 10 32 32 H 1.08996 * 115.54957 * 334.42175 * 18 8 5 33 33 H 1.09004 * 117.49928 * 0.02562 * 19 18 8 34 34 H 1.08994 * 117.49885 * 145.01968 * 19 18 8 35 35 H 1.09002 * 117.49557 * 214.98026 * 20 18 8 36 36 H 1.09002 * 117.50141 * 359.97417 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 16 2.4122 -2.2973 1.1220 6 8 2.8777 -2.6566 2.4156 7 8 1.3247 -2.9478 0.4789 8 7 3.7098 -2.4373 0.1026 9 6 3.4954 -2.6470 -1.3314 10 6 3.5357 -1.3201 -2.0447 11 1 3.7045 -0.4115 -1.4858 12 6 3.3580 -1.2662 -3.4109 13 7 3.1530 -2.3726 -4.0915 14 14 3.4071 0.3786 -4.2950 15 1 4.7307 1.0168 -4.0798 16 1 3.1912 0.1660 -5.7487 17 1 2.3394 1.2607 -3.7592 18 6 5.0720 -2.3514 0.6348 19 6 6.2211 -2.2821 -0.3730 20 6 5.9865 -3.5615 0.4339 21 1 -0.3633 0.5137 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 2.1109 -0.2066 2.0317 29 1 4.2787 -3.2949 -1.7249 30 1 2.5236 -3.1149 -1.4889 31 1 3.0284 -2.3347 -5.0527 32 1 5.1802 -1.7871 1.5610 33 1 5.9635 -2.3000 -1.4320 34 1 7.0854 -1.6725 -0.1097 35 1 6.6965 -3.7930 1.2279 36 1 5.5744 -4.4217 -0.0938 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129120667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:11 Heat of formation + Delta-G solvation = -58.709447 kcal Electronic energy + Delta-G solvation = -19582.107129 eV Core-core repulsion = 16614.810092 eV Total energy + Delta-G solvation = -2967.297036 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -37.50149 -36.76299 -36.07075 -35.15519 -33.39233 -31.74468 -30.00981 -27.09710 -26.74282 -23.12066 -21.78044 -20.98660 -20.71618 -18.72089 -17.32505 -16.98646 -16.43746 -15.56426 -15.22483 -14.43634 -14.31710 -13.80987 -13.73567 -12.99199 -12.61765 -12.41167 -12.23576 -11.86139 -11.80060 -11.44195 -11.41158 -11.22152 -11.11091 -11.08014 -10.93889 -10.88146 -10.77500 -10.53298 -10.28842 -10.05658 -9.76139 -9.49367 -8.98727 -8.55600 -7.86966 -6.17898 -4.24318 1.34592 3.21180 3.27882 3.28470 3.55666 4.16583 4.29656 4.52393 5.07800 5.12061 5.37429 5.42967 5.52754 5.54071 5.59313 5.61206 5.79633 5.97778 6.11223 6.17661 6.19518 6.27759 6.44761 6.48278 6.70571 6.75066 6.89202 6.92355 7.29987 7.36346 7.51449 7.68701 7.80056 8.08382 8.80285 9.40349 10.89159 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.016314 B = 0.011426 C = 0.008286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.865033 B = 2449.970809 C = 3378.405367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.121 3.879 3 C -0.150 4.150 4 N -1.123 6.123 5 S 2.790 3.210 6 O -1.003 7.003 7 O -0.978 6.978 8 N -0.967 5.967 9 C 0.239 3.761 10 C -0.543 4.543 11 H 0.070 0.930 12 C 0.068 3.932 13 N -0.884 5.884 14 Si 0.889 3.111 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.272 1.272 18 C 0.098 3.902 19 C -0.172 4.172 20 C -0.202 4.202 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.046 0.954 24 H 0.135 0.865 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.403 0.597 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.266 0.734 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 4.886 7.276 8.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 C -0.209 4.209 4 N -0.881 5.881 5 S 2.798 3.202 6 O -0.987 6.987 7 O -0.961 6.961 8 N -0.805 5.805 9 C 0.117 3.883 10 C -0.581 4.581 11 H 0.088 0.912 12 C -0.136 4.136 13 N -0.521 5.521 14 Si 0.716 3.284 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.010 4.010 19 C -0.210 4.210 20 C -0.242 4.242 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.153 0.847 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.234 0.766 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.546 3.984 7.341 8.370 hybrid contribution 0.316 1.511 -0.482 1.617 sum 0.862 5.495 6.859 8.831 Atomic orbital electron populations 1.22285 0.96342 1.02876 1.01059 1.21361 0.93588 0.94520 0.89075 1.21997 1.01766 0.95788 1.01327 1.56071 1.82292 1.31551 1.18180 1.01600 0.73327 0.73127 0.72115 1.93536 1.82204 1.82519 1.40481 1.93581 1.52441 1.73312 1.76773 1.57366 1.16001 1.85879 1.21274 1.19264 0.98830 0.97377 0.72815 1.21540 1.50550 0.93613 0.92445 0.91222 1.24953 0.94760 0.96453 0.97435 1.69923 1.47350 1.26826 1.08043 0.86706 0.78835 0.84089 0.78777 1.20102 1.21244 1.19761 1.21009 0.80715 1.01279 0.98001 1.23311 0.98378 0.99303 1.00036 1.23351 1.03639 0.93641 1.03571 0.92038 0.91447 0.93439 0.84748 0.92027 0.91846 0.93290 0.76564 0.94192 0.92938 0.92416 0.86640 0.86208 0.89443 0.89206 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 9.52 37.16 0.35 -2.31 16 2 C 0.12 2.08 3.12 -67.92 -0.21 1.86 16 3 C -0.15 -2.19 9.44 37.16 0.35 -1.84 16 4 N -1.12 -18.59 5.53 -4.88 -0.03 -18.62 16 5 S 2.79 55.45 6.06 -107.50 -0.65 54.80 16 6 O -1.00 -20.82 17.28 -57.17 -0.99 -21.81 16 7 O -0.98 -22.56 15.95 -57.17 -0.91 -23.47 16 8 N -0.97 -19.66 3.16 -108.57 -0.34 -20.00 16 9 C 0.24 5.66 4.59 -5.19 -0.02 5.64 16 10 C -0.54 -13.10 6.26 -34.44 -0.22 -13.32 16 11 H 0.07 1.61 6.95 -52.48 -0.36 1.25 16 12 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.88 -24.05 13.29 55.43 0.74 -23.31 16 14 Si 0.89 19.55 29.54 -169.99 -5.02 14.53 16 15 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 C 0.10 1.75 6.10 -67.93 -0.41 1.34 16 19 C -0.17 -2.90 9.63 -26.70 -0.26 -3.15 16 20 C -0.20 -3.30 10.12 -26.69 -0.27 -3.57 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.07 1.19 7.64 -51.93 -0.40 0.80 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.14 2.76 4.25 -51.93 -0.22 2.54 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.40 5.49 8.84 -34.47 -0.30 5.19 16 29 H 0.04 0.99 6.56 -51.93 -0.34 0.65 16 30 H 0.05 1.39 6.91 -51.93 -0.36 1.03 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.12 1.84 7.98 -51.93 -0.41 1.42 16 33 H 0.12 2.37 6.15 -51.93 -0.32 2.05 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.62 8.05 -51.93 -0.42 1.21 16 LS Contribution 304.98 15.07 4.60 4.60 Total: -1.00 -29.14 304.98 -8.63 -37.77 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.23 Total: 9.23 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -0.79 Total: -13.72 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.37 Total: -61.93 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -1.90 Total: -45.28 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 16 Polarization: 55.45 SS G_CDS: -0.65 Total: 54.80 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.14 -8.63 -37.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129120667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.940 kcal (2) G-P(sol) polarization free energy of solvation -29.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds