Wall clock time and date at job start Mon Mar 30 2020 04:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 5 5 S 1.65599 * 119.99913 * 95.00258 * 4 2 1 6 6 O 1.42098 * 106.40463 * 178.53804 * 5 4 2 7 7 O 1.42103 * 106.40366 * 311.46058 * 5 4 2 8 8 N 1.65605 * 107.21700 * 64.99803 * 5 4 2 9 9 C 1.46501 * 119.99993 * 269.99874 * 8 5 4 10 10 C 1.50703 * 109.47196 * 95.00128 * 9 8 5 11 11 H 1.08004 * 119.99863 * 0.02562 * 10 9 8 12 12 C 1.37869 * 120.00323 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00100 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00314 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46683 * 60.00002 * 14 12 10 16 16 H 1.48497 * 109.47495 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47252 * 300.00755 * 14 12 10 18 18 C 1.46501 * 119.99970 * 90.00051 * 8 5 4 19 19 C 1.52997 * 117.49886 * 188.74476 * 18 8 5 20 20 C 1.53002 * 117.49575 * 120.08704 * 18 8 5 21 21 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 22 22 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 24 24 H 1.09000 * 109.47312 * 239.99678 * 2 1 3 25 25 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 27 27 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 28 28 H 0.96992 * 120.00053 * 275.00239 * 4 2 1 29 29 H 1.08997 * 109.47302 * 214.99755 * 9 8 5 30 30 H 1.09003 * 109.47210 * 335.00032 * 9 8 5 31 31 H 0.97000 * 120.00108 * 180.02562 * 13 12 10 32 32 H 1.08996 * 115.54957 * 334.42175 * 18 8 5 33 33 H 1.09004 * 117.49928 * 0.02562 * 19 18 8 34 34 H 1.08994 * 117.49885 * 145.01968 * 19 18 8 35 35 H 1.09002 * 117.49557 * 214.98026 * 20 18 8 36 36 H 1.09002 * 117.50141 * 359.97417 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 16 2.4122 -2.2973 1.1220 6 8 2.8777 -2.6566 2.4156 7 8 1.3247 -2.9478 0.4789 8 7 3.7098 -2.4373 0.1026 9 6 3.4954 -2.6470 -1.3314 10 6 3.5357 -1.3201 -2.0447 11 1 3.7045 -0.4115 -1.4858 12 6 3.3580 -1.2662 -3.4109 13 7 3.1530 -2.3726 -4.0915 14 14 3.4071 0.3786 -4.2950 15 1 4.7307 1.0168 -4.0798 16 1 3.1912 0.1660 -5.7487 17 1 2.3394 1.2607 -3.7592 18 6 5.0720 -2.3514 0.6348 19 6 6.2211 -2.2821 -0.3730 20 6 5.9865 -3.5615 0.4339 21 1 -0.3633 0.5137 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 2.1109 -0.2066 2.0317 29 1 4.2787 -3.2949 -1.7249 30 1 2.5236 -3.1149 -1.4889 31 1 3.0284 -2.3347 -5.0527 32 1 5.1802 -1.7871 1.5610 33 1 5.9635 -2.3000 -1.4320 34 1 7.0854 -1.6725 -0.1097 35 1 6.6965 -3.7930 1.2279 36 1 5.5744 -4.4217 -0.0938 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129120667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:11 Heat of formation + Delta-G solvation = -79.675758 kcal Electronic energy + Delta-G solvation = -19583.016296 eV Core-core repulsion = 16614.810092 eV Total energy + Delta-G solvation = -2968.206204 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.99442 -38.37983 -37.49306 -36.85742 -35.18931 -33.47167 -31.36030 -28.95997 -27.94688 -24.96233 -23.12174 -22.39198 -22.18219 -20.28960 -18.90083 -18.66327 -18.22991 -17.20861 -16.75816 -16.13757 -15.71669 -15.36577 -15.08918 -14.52706 -14.24677 -13.90170 -13.78808 -13.50077 -13.15037 -13.08261 -12.99082 -12.91313 -12.77922 -12.49672 -12.42125 -12.39715 -12.22695 -12.13798 -11.95570 -11.56054 -11.28705 -11.09397 -10.51474 -10.38221 -9.48685 -8.12099 -6.23780 -0.25168 1.48319 1.48696 1.55774 2.00944 2.46036 2.63138 3.13134 3.18650 3.48022 4.01671 4.09173 4.11811 4.20173 4.28090 4.32724 4.47435 4.74907 4.85351 4.90568 4.96334 5.04221 5.09208 5.20357 5.28814 5.35454 5.46200 5.49017 5.54197 5.56798 5.82129 5.95245 6.14323 6.34995 6.86695 7.44082 8.95367 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.016314 B = 0.011426 C = 0.008286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.865033 B = 2449.970809 C = 3378.405367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 C -0.145 4.145 4 N -1.106 6.106 5 S 2.802 3.198 6 O -1.010 7.010 7 O -1.015 7.015 8 N -0.971 5.971 9 C 0.257 3.743 10 C -0.529 4.529 11 H 0.082 0.918 12 C 0.016 3.984 13 N -0.928 5.928 14 Si 0.948 3.052 15 H -0.267 1.267 16 H -0.295 1.295 17 H -0.256 1.256 18 C 0.076 3.924 19 C -0.166 4.166 20 C -0.195 4.195 21 H 0.071 0.929 22 H 0.040 0.960 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.420 0.580 29 H 0.021 0.979 30 H 0.016 0.984 31 H 0.264 0.736 32 H 0.142 0.858 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.860 7.352 8.740 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.008 3.992 3 C -0.203 4.203 4 N -0.869 5.869 5 S 2.811 3.189 6 O -0.994 6.994 7 O -0.999 6.999 8 N -0.809 5.809 9 C 0.133 3.867 10 C -0.568 4.568 11 H 0.100 0.900 12 C -0.184 4.184 13 N -0.567 5.567 14 Si 0.772 3.228 15 H -0.192 1.192 16 H -0.221 1.221 17 H -0.180 1.180 18 C -0.031 4.031 19 C -0.205 4.205 20 C -0.235 4.235 21 H 0.090 0.910 22 H 0.059 0.941 23 H 0.093 0.907 24 H 0.117 0.883 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.256 0.744 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.104 0.896 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.319 6.462 8.849 11.036 hybrid contribution 0.080 0.708 -0.864 1.120 sum 1.399 7.170 7.985 10.822 Atomic orbital electron populations 1.22274 0.95480 1.01780 1.02977 1.21344 0.94405 0.95798 0.87640 1.21963 1.01614 0.93743 1.03029 1.55671 1.81821 1.30317 1.19087 1.01034 0.72675 0.73704 0.71476 1.93516 1.82238 1.83144 1.40492 1.93537 1.54041 1.74822 1.77477 1.57236 1.17620 1.86407 1.19675 1.18789 0.96130 0.96896 0.74854 1.21743 1.48741 0.93921 0.92411 0.89964 1.25743 0.94712 0.99505 0.98410 1.70069 1.49458 1.29123 1.08086 0.85757 0.79549 0.80386 0.77063 1.19152 1.22091 1.18036 1.21453 0.79468 1.02993 0.99184 1.23240 0.99002 1.00312 0.97917 1.23429 1.03479 0.92591 1.03993 0.91015 0.94065 0.90666 0.88304 0.92229 0.91395 0.90376 0.74446 0.96116 0.96617 0.92742 0.84032 0.89649 0.86170 0.85826 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.04 9.52 71.98 0.69 -4.35 16 2 C 0.11 3.74 3.12 44.99 0.14 3.88 16 3 C -0.14 -3.72 9.44 71.98 0.68 -3.04 16 4 N -1.11 -34.65 5.53 -169.37 -0.94 -35.59 16 5 S 2.80 110.61 6.06 -56.49 -0.34 110.26 16 6 O -1.01 -40.59 17.28 -128.00 -2.21 -42.81 16 7 O -1.02 -48.18 15.95 -128.00 -2.04 -50.22 16 8 N -0.97 -39.61 3.16 -497.41 -1.57 -41.18 16 9 C 0.26 12.60 4.59 85.63 0.39 12.99 16 10 C -0.53 -25.81 6.26 25.60 0.16 -25.65 16 11 H 0.08 3.73 6.95 -2.91 -0.02 3.71 16 12 C 0.02 0.83 5.46 84.65 0.46 1.29 16 13 N -0.93 -52.22 13.29 21.44 0.28 -51.93 16 14 Si 0.95 39.79 29.54 68.60 2.03 41.81 16 15 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 16 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 18 C 0.08 2.59 6.10 44.99 0.27 2.87 16 19 C -0.17 -5.37 9.63 30.62 0.29 -5.08 16 20 C -0.20 -6.10 10.12 30.62 0.31 -5.79 16 21 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.04 1.45 7.64 -2.38 -0.02 1.43 16 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.10 4.02 4.25 -2.39 -0.01 4.01 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.42 10.21 8.84 -96.76 -0.85 9.36 16 29 H 0.02 1.09 6.56 -2.39 -0.02 1.07 16 30 H 0.02 0.89 6.91 -2.39 -0.02 0.87 16 31 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 32 H 0.14 4.07 7.98 -2.39 -0.02 4.05 16 33 H 0.09 3.41 6.15 -2.39 -0.01 3.40 16 34 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.07 2.63 8.05 -2.39 -0.02 2.61 16 Total: -1.00 -64.12 304.98 -1.17 -65.29 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.23 Total: 27.24 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: 3.40 Total: -22.88 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -2.23 Total: -128.70 kcal Atomic # 8 Polarization: -88.77 SS G_CDS: -4.25 Total: -93.03 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.81 kcal Atomic # 16 Polarization: 110.61 SS G_CDS: -0.34 Total: 110.26 kcal Total: -64.12 -1.17 -65.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129120667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.384 kcal (2) G-P(sol) polarization free energy of solvation -64.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds