Wall clock time and date at job start Mon Mar 30 2020 05:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.51112 * 2 1 4 4 C 1.53228 * 109.49332 * 120.07120 * 2 1 3 5 5 N 1.47083 * 108.52212 * 173.79049 * 4 2 1 6 6 S 1.65603 * 120.87904 * 128.78930 * 5 4 2 7 7 O 1.42095 * 106.40218 * 23.56997 * 6 5 4 8 8 O 1.42103 * 106.39640 * 156.48475 * 6 5 4 9 9 C 1.76199 * 107.21930 * 270.02398 * 6 5 4 10 10 H 1.07994 * 120.00055 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99832 * 180.02562 * 9 6 5 12 12 N 1.31516 * 120.00095 * 359.97438 * 11 9 6 13 13 Si 1.86796 * 120.00093 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47145 * 89.99291 * 13 11 9 15 15 H 1.48493 * 109.47285 * 209.99430 * 13 11 9 16 16 H 1.48499 * 109.47013 * 329.99596 * 13 11 9 17 17 C 1.47072 * 118.23733 * 308.81485 * 5 4 2 18 18 C 1.53242 * 108.52192 * 51.18533 * 17 5 4 19 19 H 1.09000 * 109.51813 * 186.19978 * 18 17 5 20 20 C 1.52991 * 109.49682 * 66.12795 * 18 17 5 21 21 N 1.46895 * 109.49192 * 239.93875 * 2 1 3 22 22 C 1.46904 * 111.00495 * 52.78341 * 21 2 1 23 23 H 1.09004 * 109.46650 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47209 * 300.06107 * 1 2 3 25 25 H 1.09004 * 109.47205 * 60.06289 * 1 2 3 26 26 H 1.08995 * 109.63228 * 54.08107 * 4 2 1 27 27 H 1.09002 * 109.63099 * 293.49991 * 4 2 1 28 28 H 0.96999 * 120.00189 * 180.02562 * 12 11 9 29 29 H 1.09000 * 109.62875 * 291.47435 * 17 5 4 30 30 H 1.08997 * 109.63057 * 170.89280 * 17 5 4 31 31 H 1.09001 * 109.47425 * 300.13991 * 20 18 17 32 32 H 1.09001 * 109.47303 * 60.13553 * 20 18 17 33 33 H 1.08997 * 109.47644 * 180.13823 * 20 18 17 34 34 H 1.09003 * 109.47327 * 184.29842 * 22 21 2 35 35 H 1.09001 * 109.47007 * 304.30405 * 22 21 2 36 36 H 1.09009 * 109.46548 * 64.30232 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0414 -0.7238 1.2500 5 7 3.5043 -0.8432 1.1552 6 16 4.4792 -0.3584 2.4030 7 8 3.6805 -0.4041 3.5773 8 8 5.6971 -1.0770 2.2630 9 6 4.8687 1.3384 2.1316 10 1 4.4760 1.8508 1.2659 11 6 5.6757 2.0117 3.0241 12 7 6.1543 1.3876 4.0782 13 14 6.0881 3.8108 2.7369 14 1 5.0680 4.6641 3.3977 15 1 7.4267 4.1089 3.3062 16 1 6.0971 4.0898 1.2784 17 6 4.0782 -1.4040 -0.0773 18 6 3.4867 -0.6534 -1.2752 19 1 3.8157 -1.1269 -2.2002 20 6 3.9594 0.8014 -1.2502 21 7 2.0202 -0.6937 -1.1985 22 6 1.4140 -0.1357 -2.4147 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5148 0.8894 25 1 -0.3634 0.5129 -0.8906 26 1 1.5958 -1.7169 1.3061 27 1 1.7776 -0.1504 2.1388 28 1 6.7217 1.8614 4.7062 29 1 3.8284 -2.4626 -0.1488 30 1 5.1611 -1.2804 -0.0662 31 1 3.6311 1.2744 -0.3246 32 1 5.0476 0.8309 -1.3071 33 1 3.5366 1.3356 -2.1010 34 1 1.7348 -0.7161 -3.2798 35 1 0.3279 -0.1777 -2.3315 36 1 1.7294 0.9007 -2.5353 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135263453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:25 Heat of formation + Delta-G solvation = -78.285483 kcal Electronic energy + Delta-G solvation = -19687.276125 eV Core-core repulsion = 16719.130208 eV Total energy + Delta-G solvation = -2968.145917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.37426 -35.29504 -34.23989 -33.92595 -33.09302 -32.92717 -28.95923 -26.74879 -26.38192 -25.91639 -23.28487 -21.75735 -19.05911 -18.23503 -17.38632 -16.31484 -15.73324 -15.18529 -15.12539 -14.64341 -14.28114 -14.09665 -13.82559 -13.38564 -12.85672 -12.30624 -12.15692 -12.04763 -11.95984 -11.64403 -11.51135 -11.35276 -11.23452 -11.04912 -10.96129 -10.78184 -10.61861 -10.38368 -10.26629 -10.07501 -9.87621 -9.24913 -8.88221 -8.33150 -7.87864 -6.69076 -5.31019 2.28150 3.05041 3.12187 3.17869 4.03397 4.09094 4.55133 4.64397 5.10087 5.17104 5.17478 5.40163 5.50896 5.53522 5.63190 5.66154 5.80264 5.85005 5.90887 5.94263 6.00102 6.04446 6.17399 6.22108 6.26347 6.28821 6.42696 6.50083 6.66889 6.80317 7.31737 7.32317 7.36004 7.60834 7.98987 8.89725 10.24350 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023901 B = 0.008518 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.228945 B = 3286.223967 C = 3606.695163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.060 3.940 3 H 0.055 0.945 4 C 0.139 3.861 5 N -1.012 6.012 6 S 2.714 3.286 7 O -1.005 7.005 8 O -1.004 7.004 9 C -1.019 5.019 10 H 0.103 0.897 11 C 0.134 3.866 12 N -0.846 5.846 13 Si 0.917 3.083 14 H -0.268 1.268 15 H -0.275 1.275 16 H -0.263 1.263 17 C 0.137 3.863 18 C 0.069 3.931 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.529 5.529 22 C 0.019 3.981 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.290 0.710 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.081 -0.675 -11.047 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.050 4.050 3 H 0.073 0.927 4 C 0.012 3.988 5 N -0.847 5.847 6 S 2.816 3.184 7 O -0.995 6.995 8 O -0.994 6.994 9 C -1.152 5.152 10 H 0.121 0.879 11 C -0.084 4.084 12 N -0.476 5.476 13 Si 0.741 3.259 14 H -0.193 1.193 15 H -0.200 1.200 16 H -0.187 1.187 17 C 0.011 3.989 18 C -0.041 4.041 19 H 0.103 0.897 20 C -0.251 4.251 21 N -0.253 5.253 22 C -0.130 4.130 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.834 -1.780 -10.109 12.913 hybrid contribution 0.474 2.437 -0.614 2.558 sum -7.360 0.657 -10.723 13.023 Atomic orbital electron populations 1.21902 0.94363 1.02476 1.01747 1.22092 0.94902 0.96956 0.91056 0.92748 1.21298 0.80458 1.00363 0.96684 1.58241 1.15424 1.78840 1.32187 1.00528 0.71380 0.75984 0.70556 1.93349 1.70830 1.89291 1.46041 1.93351 1.45002 1.75375 1.85716 1.30679 1.43670 1.21705 1.19130 0.87900 1.24726 0.91032 1.00535 0.92060 1.69900 1.28353 1.38680 1.10633 0.86217 0.78342 0.81751 0.79576 1.19253 1.19993 1.18741 1.21299 0.98089 0.96723 0.82833 1.22070 0.87238 0.95702 0.99096 0.89707 1.22548 1.02476 0.97579 1.02512 1.62156 1.06233 1.55006 1.01935 1.22455 1.00109 0.97728 0.92667 0.91781 0.91869 0.92531 0.91791 0.89086 0.89928 0.91800 0.88969 0.90557 0.91543 0.93302 0.91874 0.91192 0.95603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.73 37.16 0.32 -1.40 16 2 C 0.06 0.89 2.24 -67.60 -0.15 0.74 16 3 H 0.05 0.88 6.10 -51.93 -0.32 0.56 16 4 C 0.14 2.46 5.82 -3.61 -0.02 2.44 16 5 N -1.01 -20.79 2.80 -113.25 -0.32 -21.10 16 6 S 2.71 72.18 4.98 -107.50 -0.53 71.65 16 7 O -1.00 -29.38 16.80 -57.17 -0.96 -30.34 16 8 O -1.00 -29.30 16.80 -57.17 -0.96 -30.26 16 9 C -1.02 -27.53 9.74 30.60 0.30 -27.23 16 10 H 0.10 2.54 5.90 -52.49 -0.31 2.23 16 11 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 12 N -0.85 -24.84 13.19 55.43 0.73 -24.11 16 13 Si 0.92 20.48 29.54 -169.99 -5.02 15.46 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 15 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 16 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 17 C 0.14 2.42 5.92 -3.61 -0.02 2.40 16 18 C 0.07 1.02 2.93 -67.59 -0.20 0.82 16 19 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 20 C -0.19 -3.02 8.40 37.15 0.31 -2.70 16 21 N -0.53 -7.41 4.68 -226.61 -1.06 -8.47 16 22 C 0.02 0.21 8.89 60.07 0.53 0.74 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.58 6.23 -51.93 -0.32 0.26 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.09 1.70 7.22 -51.93 -0.37 1.32 16 28 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.09 1.71 7.22 -51.93 -0.37 1.33 16 31 H 0.08 1.37 4.01 -51.93 -0.21 1.17 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.66 6.59 -51.93 -0.34 0.32 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.70 5.95 -51.93 -0.31 0.40 16 36 H 0.03 0.29 6.52 -51.92 -0.34 -0.04 16 LS Contribution 289.20 15.07 4.36 4.36 Total: -1.00 -33.57 289.20 -7.77 -41.34 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.99 Total: 2.04 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 0.98 Total: -20.57 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.65 Total: -53.68 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -1.92 Total: -60.60 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 72.18 SS G_CDS: -0.53 Total: 71.65 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.57 -7.77 -41.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135263453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.942 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds