Wall clock time and date at job start Mon Mar 30 2020 05:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.51539 * 2 1 4 4 C 1.53243 * 109.48860 * 239.92956 * 2 1 3 5 5 N 1.47084 * 108.51892 * 186.20957 * 4 2 1 6 6 S 1.65594 * 120.88085 * 231.18688 * 5 4 2 7 7 O 1.42104 * 106.40453 * 336.46468 * 6 5 4 8 8 O 1.42104 * 106.40271 * 203.53999 * 6 5 4 9 9 C 1.76204 * 107.21831 * 90.00462 * 6 5 4 10 10 H 1.08006 * 120.00041 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00238 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00089 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 119.99938 * 179.97438 * 11 9 6 14 14 H 1.48506 * 109.47297 * 269.99556 * 13 11 9 15 15 H 1.48503 * 109.47261 * 149.99737 * 13 11 9 16 16 H 1.48500 * 109.47454 * 29.99730 * 13 11 9 17 17 C 1.47085 * 118.23435 * 51.45992 * 5 4 2 18 18 C 1.53693 * 108.27815 * 308.48410 * 17 5 4 19 19 H 1.09001 * 109.44591 * 173.96375 * 18 17 5 20 20 C 1.53003 * 109.64684 * 294.08103 * 18 17 5 21 21 N 1.46896 * 109.25623 * 54.08030 * 18 17 5 22 22 C 1.46906 * 110.99629 * 172.60884 * 21 18 17 23 23 H 1.08994 * 109.47458 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46626 * 300.06595 * 1 2 3 25 25 H 1.09001 * 109.47106 * 60.06247 * 1 2 3 26 26 H 1.08999 * 109.62398 * 66.50375 * 4 2 1 27 27 H 1.08989 * 109.63092 * 305.92224 * 4 2 1 28 28 H 0.96998 * 119.99255 * 0.02562 * 12 11 9 29 29 H 1.08997 * 109.62404 * 68.25036 * 17 5 4 30 30 H 1.08996 * 109.62284 * 188.82939 * 17 5 4 31 31 H 1.09002 * 109.47509 * 179.86178 * 20 18 17 32 32 H 1.08999 * 109.46942 * 299.85832 * 20 18 17 33 33 H 1.08997 * 109.47115 * 59.85639 * 20 18 17 34 34 H 1.09008 * 109.46932 * 184.30365 * 22 21 18 35 35 H 1.08996 * 109.47330 * 304.30064 * 22 21 18 36 36 H 1.08998 * 109.47272 * 64.30732 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2502 5 7 3.5042 -0.8433 -1.1554 6 16 4.4791 -0.3591 -2.4033 7 8 3.6801 -0.4044 -3.5776 8 8 5.6968 -1.0781 -2.2635 9 6 4.8693 1.3377 -2.1322 10 1 4.4763 1.8506 -1.2668 11 6 5.6756 2.0109 -3.0254 12 7 6.1538 1.3865 -4.0795 13 14 6.0887 3.8099 -2.7383 14 1 5.0683 4.6635 -3.3981 15 1 7.4270 4.1076 -3.3087 16 1 6.0991 4.0887 -1.2797 17 6 4.0778 -1.4099 0.0747 18 6 3.4867 -0.6537 1.2751 19 1 3.8157 -1.1272 2.2001 20 6 3.9595 0.8012 1.2501 21 7 2.0202 -0.6938 1.1984 22 6 1.4141 -0.1358 2.4147 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5149 0.8895 25 1 -0.3633 0.5129 -0.8905 26 1 1.7775 -0.1504 -2.1388 27 1 1.5957 -1.7169 -1.3063 28 1 5.9389 0.4525 -4.2286 29 1 3.8242 -2.4677 0.1435 30 1 5.1612 -1.2903 0.0623 31 1 3.5368 1.3354 2.1010 32 1 5.0476 0.8306 1.3069 33 1 3.6312 1.2741 0.3245 34 1 0.3309 -0.2473 2.3648 35 1 1.7942 -0.6675 3.2869 36 1 1.6672 0.9213 2.4947 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135263475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:28 Heat of formation + Delta-G solvation = -81.337473 kcal Electronic energy + Delta-G solvation = -19736.242722 eV Core-core repulsion = 16767.964461 eV Total energy + Delta-G solvation = -2968.278261 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.44021 -35.61398 -34.38807 -34.36467 -33.18327 -32.99094 -29.03065 -26.81704 -26.35222 -25.45240 -23.36332 -21.84954 -19.40515 -18.64598 -17.69578 -16.39004 -15.79954 -15.28264 -15.00513 -14.67250 -14.26482 -14.16425 -13.88746 -13.62668 -13.00885 -12.63097 -12.22773 -12.16027 -12.00254 -11.74367 -11.44371 -11.30180 -11.21557 -11.10204 -11.00016 -10.87643 -10.61212 -10.50939 -10.36533 -10.34816 -10.04650 -9.19436 -8.79928 -8.28778 -7.93210 -7.17601 -5.39163 2.07359 3.20328 3.22585 3.40753 3.98970 4.11673 4.32922 4.70127 5.00801 5.06346 5.10542 5.32352 5.41787 5.46312 5.55045 5.58726 5.63293 5.73170 5.78597 5.86222 5.89779 5.96677 6.09251 6.13198 6.15811 6.17996 6.28720 6.38044 6.59998 6.64321 7.24659 7.26155 7.41124 7.62878 8.05576 8.62051 10.19310 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023831 B = 0.008566 C = 0.007793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.653636 B = 3268.112051 C = 3592.045909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 H 0.055 0.945 4 C 0.139 3.861 5 N -1.006 6.006 6 S 2.689 3.311 7 O -1.011 7.011 8 O -1.010 7.010 9 C -1.082 5.082 10 H 0.104 0.896 11 C 0.091 3.909 12 N -0.846 5.846 13 Si 1.080 2.920 14 H -0.275 1.275 15 H -0.273 1.273 16 H -0.279 1.279 17 C 0.137 3.863 18 C 0.069 3.931 19 H 0.086 0.914 20 C -0.192 4.192 21 N -0.529 5.529 22 C 0.021 3.979 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.276 0.724 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.638 -0.933 11.813 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.049 4.049 3 H 0.073 0.927 4 C 0.012 3.988 5 N -0.841 5.841 6 S 2.792 3.208 7 O -1.001 7.001 8 O -1.000 7.000 9 C -1.217 5.217 10 H 0.122 0.878 11 C -0.128 4.128 12 N -0.475 5.475 13 Si 0.904 3.096 14 H -0.201 1.201 15 H -0.198 1.198 16 H -0.204 1.204 17 C 0.011 3.989 18 C -0.041 4.041 19 H 0.104 0.896 20 C -0.251 4.251 21 N -0.254 5.254 22 C -0.128 4.128 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.683 -0.815 10.415 12.968 hybrid contribution -0.684 0.141 1.192 1.382 sum -8.368 -0.673 11.608 14.325 Atomic orbital electron populations 1.21888 0.94225 1.02498 1.01834 1.22088 0.94999 0.96931 0.90924 0.92684 1.21327 0.80116 1.00469 0.96861 1.57927 1.15424 1.78655 1.32109 1.01112 0.71811 0.76673 0.71185 1.93407 1.70690 1.89548 1.46476 1.93407 1.45068 1.75722 1.85852 1.31571 1.46715 1.21263 1.22117 0.87799 1.25925 0.89411 1.07498 0.89933 1.70821 1.38075 1.13184 1.25426 0.83448 0.77646 0.72075 0.76475 1.20070 1.19775 1.20392 1.21423 0.98077 0.96687 0.82726 1.22149 0.87261 0.95714 0.98967 0.89617 1.22541 1.02501 0.97462 1.02564 1.62154 1.06196 1.55026 1.01980 1.22427 1.00138 0.97645 0.92555 0.91769 0.92457 0.91865 0.89120 0.91671 0.91176 0.91642 0.88993 0.93191 0.91545 0.90584 0.91232 0.91832 0.95586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.72 37.16 0.32 -1.38 16 2 C 0.06 0.89 2.24 -67.59 -0.15 0.74 16 3 H 0.06 0.89 6.10 -51.93 -0.32 0.57 16 4 C 0.14 2.45 5.81 -3.60 -0.02 2.42 16 5 N -1.01 -20.49 2.79 -112.97 -0.31 -20.81 16 6 S 2.69 70.43 4.34 -107.50 -0.47 69.96 16 7 O -1.01 -28.91 16.42 -57.17 -0.94 -29.85 16 8 O -1.01 -28.82 16.41 -57.17 -0.94 -29.76 16 9 C -1.08 -29.29 9.74 30.60 0.30 -29.00 16 10 H 0.10 2.59 5.90 -52.48 -0.31 2.28 16 11 C 0.09 2.56 5.46 -17.82 -0.10 2.46 16 12 N -0.85 -25.83 13.66 55.43 0.76 -25.07 16 13 Si 1.08 23.92 29.90 -169.99 -5.08 18.83 16 14 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 17 C 0.14 2.41 5.97 -3.36 -0.02 2.39 16 18 C 0.07 1.02 2.93 -67.35 -0.20 0.82 16 19 H 0.09 1.08 8.06 -51.93 -0.42 0.66 16 20 C -0.19 -3.00 8.40 37.16 0.31 -2.69 16 21 N -0.53 -7.33 4.67 -226.32 -1.06 -8.39 16 22 C 0.02 0.23 8.66 60.07 0.52 0.75 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.58 6.33 -51.92 -0.33 0.26 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 1.68 7.22 -51.93 -0.37 1.31 16 27 H 0.06 1.06 8.14 -51.94 -0.42 0.64 16 28 H 0.28 8.70 6.52 -40.82 -0.27 8.43 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.70 7.21 -51.93 -0.37 1.32 16 31 H 0.05 0.67 6.69 -51.93 -0.35 0.33 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.37 4.01 -51.93 -0.21 1.16 16 34 H 0.07 0.69 6.21 -51.92 -0.32 0.37 16 35 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 36 H 0.03 0.29 6.72 -51.93 -0.35 -0.06 16 LS Contribution 287.19 15.07 4.33 4.33 Total: -1.00 -33.40 287.19 -7.69 -41.09 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.94 Total: 3.14 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 0.97 Total: -23.48 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.62 Total: -54.27 kcal Atomic # 8 Polarization: -57.73 SS G_CDS: -1.88 Total: -59.61 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.08 Total: 18.83 kcal Atomic # 16 Polarization: 70.43 SS G_CDS: -0.47 Total: 69.96 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.40 -7.69 -41.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135263475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.245 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds