Wall clock time and date at job start Mon Mar 30 2020 05:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.51539 * 2 1 4 4 C 1.53243 * 109.48860 * 239.92956 * 2 1 3 5 5 N 1.47084 * 108.51892 * 186.20957 * 4 2 1 6 6 S 1.65594 * 120.88085 * 231.18688 * 5 4 2 7 7 O 1.42104 * 106.40453 * 336.46468 * 6 5 4 8 8 O 1.42104 * 106.40271 * 203.53999 * 6 5 4 9 9 C 1.76204 * 107.21831 * 90.00462 * 6 5 4 10 10 H 1.08006 * 120.00041 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00238 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00089 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 119.99938 * 179.97438 * 11 9 6 14 14 H 1.48506 * 109.47297 * 269.99556 * 13 11 9 15 15 H 1.48503 * 109.47261 * 149.99737 * 13 11 9 16 16 H 1.48500 * 109.47454 * 29.99730 * 13 11 9 17 17 C 1.47085 * 118.23435 * 51.45992 * 5 4 2 18 18 C 1.53693 * 108.27815 * 308.48410 * 17 5 4 19 19 H 1.09001 * 109.44591 * 173.96375 * 18 17 5 20 20 C 1.53003 * 109.64684 * 294.08103 * 18 17 5 21 21 N 1.46896 * 109.25623 * 54.08030 * 18 17 5 22 22 C 1.46906 * 110.99629 * 172.60884 * 21 18 17 23 23 H 1.08994 * 109.47458 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46626 * 300.06595 * 1 2 3 25 25 H 1.09001 * 109.47106 * 60.06247 * 1 2 3 26 26 H 1.08999 * 109.62398 * 66.50375 * 4 2 1 27 27 H 1.08989 * 109.63092 * 305.92224 * 4 2 1 28 28 H 0.96998 * 119.99255 * 0.02562 * 12 11 9 29 29 H 1.08997 * 109.62404 * 68.25036 * 17 5 4 30 30 H 1.08996 * 109.62284 * 188.82939 * 17 5 4 31 31 H 1.09002 * 109.47509 * 179.86178 * 20 18 17 32 32 H 1.08999 * 109.46942 * 299.85832 * 20 18 17 33 33 H 1.08997 * 109.47115 * 59.85639 * 20 18 17 34 34 H 1.09008 * 109.46932 * 184.30365 * 22 21 18 35 35 H 1.08996 * 109.47330 * 304.30064 * 22 21 18 36 36 H 1.08998 * 109.47272 * 64.30732 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2502 5 7 3.5042 -0.8433 -1.1554 6 16 4.4791 -0.3591 -2.4033 7 8 3.6801 -0.4044 -3.5776 8 8 5.6968 -1.0781 -2.2635 9 6 4.8693 1.3377 -2.1322 10 1 4.4763 1.8506 -1.2668 11 6 5.6756 2.0109 -3.0254 12 7 6.1538 1.3865 -4.0795 13 14 6.0887 3.8099 -2.7383 14 1 5.0683 4.6635 -3.3981 15 1 7.4270 4.1076 -3.3087 16 1 6.0991 4.0887 -1.2797 17 6 4.0778 -1.4099 0.0747 18 6 3.4867 -0.6537 1.2751 19 1 3.8157 -1.1272 2.2001 20 6 3.9595 0.8012 1.2501 21 7 2.0202 -0.6938 1.1984 22 6 1.4141 -0.1358 2.4147 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5149 0.8895 25 1 -0.3633 0.5129 -0.8905 26 1 1.7775 -0.1504 -2.1388 27 1 1.5957 -1.7169 -1.3063 28 1 5.9389 0.4525 -4.2286 29 1 3.8242 -2.4677 0.1435 30 1 5.1612 -1.2903 0.0623 31 1 3.5368 1.3354 2.1010 32 1 5.0476 0.8306 1.3069 33 1 3.6312 1.2741 0.3245 34 1 0.3309 -0.2473 2.3648 35 1 1.7942 -0.6675 3.2869 36 1 1.6672 0.9213 2.4947 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135263475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:28 Heat of formation + Delta-G solvation = -108.175440 kcal Electronic energy + Delta-G solvation = -19737.406503 eV Core-core repulsion = 16767.964461 eV Total energy + Delta-G solvation = -2969.442043 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.65905 -37.78817 -36.57744 -35.84257 -35.22886 -34.22885 -30.17009 -28.13746 -27.82979 -27.21838 -24.66424 -23.03967 -21.44916 -20.11802 -19.31843 -18.34753 -17.12074 -16.96977 -16.64482 -16.17150 -15.72049 -15.66741 -15.42107 -15.24683 -14.61989 -14.04317 -13.47288 -13.28141 -13.27007 -13.13829 -13.05354 -12.98519 -12.80171 -12.77112 -12.64136 -12.57798 -12.37297 -12.00163 -11.95695 -11.65724 -11.51779 -11.22512 -10.67676 -9.90684 -9.39698 -9.14066 -7.63059 0.07999 1.42139 1.47411 1.71067 2.28791 2.49773 2.58182 2.95094 3.47279 3.68970 3.81087 3.96316 4.11976 4.18335 4.27902 4.34339 4.44623 4.50190 4.62353 4.70352 4.76202 4.83313 4.86882 4.95189 5.01468 5.03228 5.06938 5.14896 5.29127 5.38720 5.46779 5.80032 5.84322 6.11925 6.22162 6.48558 7.93360 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023831 B = 0.008566 C = 0.007793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.653636 B = 3268.112051 C = 3592.045909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.064 3.936 3 H 0.041 0.959 4 C 0.130 3.870 5 N -1.001 6.001 6 S 2.692 3.308 7 O -1.045 7.045 8 O -1.043 7.043 9 C -1.089 5.089 10 H 0.122 0.878 11 C 0.036 3.964 12 N -0.879 5.879 13 Si 1.120 2.880 14 H -0.255 1.255 15 H -0.268 1.268 16 H -0.250 1.250 17 C 0.127 3.873 18 C 0.075 3.925 19 H 0.117 0.883 20 C -0.191 4.191 21 N -0.530 5.530 22 C 0.020 3.980 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.255 0.745 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.160 -0.022 14.596 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.046 4.046 3 H 0.059 0.941 4 C 0.004 3.996 5 N -0.839 5.839 6 S 2.796 3.204 7 O -1.035 7.035 8 O -1.033 7.033 9 C -1.223 5.223 10 H 0.140 0.860 11 C -0.174 4.174 12 N -0.509 5.509 13 Si 0.934 3.066 14 H -0.179 1.179 15 H -0.192 1.192 16 H -0.174 1.174 17 C 0.002 3.998 18 C -0.035 4.035 19 H 0.135 0.865 20 C -0.250 4.250 21 N -0.255 5.255 22 C -0.128 4.128 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -9.226 0.072 13.212 16.114 hybrid contribution -0.282 -0.234 0.401 0.543 sum -9.508 -0.162 13.613 16.605 Atomic orbital electron populations 1.21860 0.91523 1.03393 1.03016 1.22018 0.97006 0.95541 0.90010 0.94142 1.21601 0.78265 1.01571 0.98138 1.57475 1.16166 1.78541 1.31732 1.00666 0.71551 0.76530 0.71686 1.93349 1.71242 1.89822 1.49059 1.93350 1.47129 1.76208 1.86613 1.31899 1.46027 1.22003 1.22394 0.85987 1.27740 0.88767 1.11836 0.89046 1.70977 1.40341 1.12182 1.27436 0.83069 0.78249 0.66927 0.78363 1.17915 1.19208 1.17403 1.21717 0.97450 0.98072 0.82602 1.22122 0.88031 0.94841 0.98478 0.86539 1.22519 1.02078 0.98241 1.02114 1.62159 1.05431 1.55177 1.02708 1.22536 1.01017 0.97708 0.91499 0.90986 0.90379 0.91664 0.90914 0.90180 0.93424 0.89993 0.90615 0.90762 0.92386 0.93350 0.89627 0.90158 0.95553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.72 71.98 0.63 -2.21 16 2 C 0.06 1.77 2.24 45.00 0.10 1.87 16 3 H 0.04 1.25 6.10 -2.39 -0.01 1.23 16 4 C 0.13 4.50 5.81 86.35 0.50 5.01 16 5 N -1.00 -40.92 2.79 -511.33 -1.43 -42.35 16 6 S 2.69 145.56 4.34 -56.49 -0.25 145.32 16 7 O -1.04 -62.23 16.42 -128.00 -2.10 -64.33 16 8 O -1.04 -61.89 16.41 -128.00 -2.10 -63.99 16 9 C -1.09 -59.80 9.74 67.73 0.66 -59.14 16 10 H 0.12 6.07 5.90 -2.91 -0.02 6.06 16 11 C 0.04 2.06 5.46 84.65 0.46 2.52 16 12 N -0.88 -55.32 13.66 21.45 0.29 -55.03 16 13 Si 1.12 47.04 29.90 68.60 2.05 49.09 16 14 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 15 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 16 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 17 C 0.13 4.34 5.97 86.50 0.52 4.86 16 18 C 0.08 2.02 2.93 45.15 0.13 2.16 16 19 H 0.12 2.48 8.06 -2.39 -0.02 2.46 16 20 C -0.19 -5.57 8.40 71.98 0.60 -4.96 16 21 N -0.53 -12.96 4.67 -869.94 -4.07 -17.02 16 22 C 0.02 0.35 8.66 127.69 1.11 1.46 16 23 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.08 1.28 6.33 -2.38 -0.02 1.26 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 2.76 7.22 -2.39 -0.02 2.74 16 27 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 28 H 0.25 16.86 6.52 -92.71 -0.60 16.25 16 29 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.08 2.82 7.21 -2.39 -0.02 2.80 16 31 H 0.07 1.77 6.69 -2.39 -0.02 1.76 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.68 4.01 -2.39 -0.01 1.67 16 34 H 0.09 1.28 6.21 -2.38 -0.01 1.26 16 35 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 36 H 0.03 0.48 6.72 -2.39 -0.02 0.46 16 Total: -1.00 -74.60 287.19 -1.64 -76.24 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 1.24 Total: 20.51 kcal Atomic # 6 Polarization: -53.14 SS G_CDS: 4.71 Total: -48.43 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -5.20 Total: -114.40 kcal Atomic # 8 Polarization: -124.12 SS G_CDS: -4.20 Total: -128.33 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.05 Total: 49.09 kcal Atomic # 16 Polarization: 145.56 SS G_CDS: -0.25 Total: 145.32 kcal Total: -74.60 -1.64 -76.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135263475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.932 kcal (2) G-P(sol) polarization free energy of solvation -74.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds