Wall clock time and date at job start Mon Mar 30 2020 04:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.45187 * 2 1 4 4 C 1.53033 * 109.46168 * 240.02720 * 2 1 3 5 5 C 1.53121 * 109.27702 * 180.80219 * 4 2 1 6 6 C 1.53109 * 109.15983 * 57.65794 * 5 4 2 7 7 C 1.53042 * 109.27881 * 302.34062 * 6 5 4 8 8 H 1.08994 * 109.46351 * 299.16873 * 7 6 5 9 9 C 1.52997 * 109.45609 * 179.19150 * 7 6 5 10 10 N 1.46837 * 109.46369 * 119.97338 * 2 1 3 11 11 N 1.36605 * 111.00035 * 305.85259 * 10 2 1 12 12 S 1.65606 * 119.99587 * 110.43152 * 11 10 2 13 13 O 1.42091 * 106.40340 * 306.37267 * 12 11 10 14 14 O 1.42100 * 106.39794 * 173.45028 * 12 11 10 15 15 C 1.76201 * 107.21774 * 59.91640 * 12 11 10 16 16 H 1.08000 * 120.00301 * 354.85648 * 15 12 11 17 17 C 1.37879 * 119.99904 * 174.86168 * 15 12 11 18 18 N 1.31514 * 120.00155 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 119.99832 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47410 * 269.99597 * 19 17 15 21 21 H 1.48501 * 109.47320 * 29.99995 * 19 17 15 22 22 H 1.48503 * 109.47025 * 149.99603 * 19 17 15 23 23 H 1.09003 * 109.46831 * 302.00851 * 1 2 3 24 24 H 1.08999 * 109.47068 * 62.00719 * 1 2 3 25 25 H 1.08993 * 109.46808 * 182.00938 * 1 2 3 26 26 H 1.08997 * 109.50286 * 60.86569 * 4 2 1 27 27 H 1.08996 * 109.53924 * 300.76646 * 4 2 1 28 28 H 1.08996 * 109.52478 * 297.74841 * 5 4 2 29 29 H 1.09004 * 109.52071 * 177.56238 * 5 4 2 30 30 H 1.08999 * 109.50395 * 182.40264 * 6 5 4 31 31 H 1.08995 * 109.51031 * 62.28422 * 6 5 4 32 32 H 1.08999 * 109.47324 * 306.37150 * 9 7 6 33 33 H 1.08997 * 109.46960 * 66.37423 * 9 7 6 34 34 H 1.09000 * 109.47061 * 186.37380 * 9 7 6 35 35 H 0.96994 * 120.00205 * 290.42931 * 11 10 2 36 36 H 0.96996 * 119.99833 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7359 -1.2356 6 6 4.0548 -1.4187 0.0466 7 6 3.4865 -0.6776 1.2590 8 1 3.8403 0.3533 1.2531 9 6 3.9512 -1.3687 2.5425 10 7 2.0193 -0.6917 1.1993 11 7 1.4782 -0.1512 2.3312 12 16 0.3779 -1.0155 3.2171 13 8 -0.6452 -1.4088 2.3129 14 8 0.1270 -0.2590 4.3935 15 6 1.1769 -2.4967 3.7392 16 1 2.1746 -2.7229 3.3933 17 6 0.5282 -3.3670 4.5894 18 7 -0.6867 -3.0915 5.0110 19 14 1.3749 -4.9376 5.1423 20 1 1.0632 -6.0308 4.1869 21 1 2.8433 -4.7201 5.1838 22 1 0.8914 -5.3104 6.4960 23 1 -0.3633 0.5447 0.8715 24 1 -0.3633 0.4823 -0.9074 25 1 -0.3633 -1.0270 0.0360 26 1 1.6895 -0.1981 -2.1399 27 1 1.6659 -1.7446 -1.2584 28 1 3.9457 0.2871 -1.2672 29 1 3.9379 -1.2862 -2.1021 30 1 5.1439 -1.3946 0.0830 31 1 3.7126 -2.4534 0.0594 32 1 3.6964 -2.4275 2.4978 33 1 5.0308 -1.2587 2.6439 34 1 3.4573 -0.9121 3.4003 35 1 1.7383 0.7387 2.6160 36 1 -1.1428 -3.7036 5.6094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147789272.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:26 Heat of formation + Delta-G solvation = -77.572735 kcal Electronic energy + Delta-G solvation = -19704.741341 eV Core-core repulsion = 16736.626331 eV Total energy + Delta-G solvation = -2968.115010 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.38263 -35.10874 -34.47025 -33.87420 -33.27915 -32.86826 -29.59304 -27.25071 -26.26271 -25.66023 -22.04733 -20.83629 -19.85296 -18.82385 -17.45089 -16.72017 -16.07386 -15.49365 -14.87235 -14.16087 -14.01821 -13.80649 -13.64347 -13.49193 -13.15317 -12.21609 -12.06744 -11.88796 -11.58614 -11.44111 -11.26984 -11.14495 -10.85553 -10.73781 -10.57931 -10.54824 -10.50356 -10.33250 -10.15548 -9.93991 -9.89558 -9.14026 -8.99241 -8.54494 -8.17851 -6.58861 -5.15538 2.34989 3.13437 3.19714 3.25203 4.01100 4.27067 4.76708 4.81857 4.98616 5.04297 5.21195 5.30652 5.50100 5.59848 5.64912 5.77731 5.90249 5.94898 6.00097 6.06451 6.08996 6.15400 6.24233 6.36791 6.43830 6.50247 6.57342 6.75088 6.82489 7.02686 7.05954 7.41400 7.47461 8.18358 8.59460 9.02567 10.35619 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.009031 C = 0.007600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.571199 B = 3099.573954 C = 3683.325215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.062 3.938 3 H 0.037 0.963 4 C -0.110 4.110 5 C -0.122 4.122 6 C -0.111 4.111 7 C 0.065 3.935 8 H 0.040 0.960 9 C -0.151 4.151 10 N -0.260 5.260 11 N -0.976 5.976 12 S 2.731 3.269 13 O -0.996 6.996 14 O -1.006 7.006 15 C -1.007 5.007 16 H 0.113 0.887 17 C 0.132 3.868 18 N -0.851 5.851 19 Si 0.917 3.083 20 H -0.268 1.268 21 H -0.263 1.263 22 H -0.278 1.278 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.373 0.627 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.998 3.605 -9.715 13.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.048 4.048 3 H 0.055 0.945 4 C -0.149 4.149 5 C -0.160 4.160 6 C -0.150 4.150 7 C -0.045 4.045 8 H 0.058 0.942 9 C -0.208 4.208 10 N -0.081 5.081 11 N -0.818 5.818 12 S 2.830 3.170 13 O -0.986 6.986 14 O -0.996 6.996 15 C -1.141 5.141 16 H 0.131 0.869 17 C -0.085 4.085 18 N -0.482 5.482 19 Si 0.741 3.259 20 H -0.193 1.193 21 H -0.187 1.187 22 H -0.203 1.203 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.206 0.794 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.701 3.224 -9.480 12.632 hybrid contribution 1.391 0.128 0.483 1.478 sum 9.092 3.352 -8.998 13.224 Atomic orbital electron populations 1.21890 0.92910 1.04878 1.00378 1.22161 0.97032 0.95256 0.90313 0.94545 1.21630 0.95002 1.02106 0.96181 1.21624 0.96153 1.00356 0.97867 1.21646 0.99536 1.00775 0.93027 1.22094 0.87757 0.98074 0.96543 0.94237 1.22016 0.99555 1.02460 0.96779 1.63079 1.05782 1.46015 0.93257 1.56639 1.63953 1.27955 1.33221 1.00143 0.71660 0.74313 0.70863 1.93338 1.55952 1.83467 1.65812 1.93394 1.84364 1.74284 1.47514 1.30644 1.15556 1.26617 1.41292 0.86933 1.24735 0.93533 0.98505 0.91678 1.69912 1.11532 1.37425 1.29286 0.86231 0.80324 0.81197 0.78152 1.19306 1.18726 1.20278 0.92820 0.93321 0.89424 0.91551 0.90391 0.92583 0.91810 0.91519 0.90412 0.90753 0.92993 0.91199 0.79417 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.81 37.16 0.29 -2.23 16 2 C 0.06 0.98 2.63 -67.73 -0.18 0.80 16 3 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -1.44 5.37 -26.65 -0.14 -1.58 16 5 C -0.12 -1.38 6.00 -26.61 -0.16 -1.54 16 6 C -0.11 -1.40 5.37 -26.65 -0.14 -1.55 16 7 C 0.06 0.98 2.63 -67.72 -0.18 0.80 16 8 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 9 C -0.15 -2.43 8.05 37.16 0.30 -2.13 16 10 N -0.26 -4.72 4.53 -99.78 -0.45 -5.17 16 11 N -0.98 -19.78 3.03 60.35 0.18 -19.59 16 12 S 2.73 72.06 5.07 -107.50 -0.54 71.52 16 13 O -1.00 -28.35 14.96 -57.17 -0.86 -29.21 16 14 O -1.01 -29.57 17.90 -57.17 -1.02 -30.59 16 15 C -1.01 -27.36 9.37 30.60 0.29 -27.08 16 16 H 0.11 2.79 4.69 -52.49 -0.25 2.54 16 17 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 18 N -0.85 -25.12 13.09 55.43 0.73 -24.40 16 19 Si 0.92 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H 0.05 1.03 6.85 -51.93 -0.36 0.68 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 1.78 7.09 -51.93 -0.37 1.41 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.29 6.54 -51.93 -0.34 0.95 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.25 6.87 -51.93 -0.36 0.89 16 35 H 0.37 6.66 8.95 -178.81 -1.60 5.06 16 36 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 292.86 15.07 4.41 4.41 Total: -1.00 -33.54 292.86 -9.23 -42.76 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.63 Total: 5.51 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: -0.02 Total: -30.92 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.46 Total: -49.16 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -1.88 Total: -59.80 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 72.06 SS G_CDS: -0.54 Total: 71.52 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.54 -9.23 -42.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147789272.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.808 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds