Wall clock time and date at job start Mon Mar 30 2020 04:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.45187 * 2 1 4 4 C 1.53033 * 109.46168 * 240.02720 * 2 1 3 5 5 C 1.53121 * 109.27702 * 180.80219 * 4 2 1 6 6 C 1.53109 * 109.15983 * 57.65794 * 5 4 2 7 7 C 1.53042 * 109.27881 * 302.34062 * 6 5 4 8 8 H 1.08994 * 109.46351 * 299.16873 * 7 6 5 9 9 C 1.52997 * 109.45609 * 179.19150 * 7 6 5 10 10 N 1.46837 * 109.46369 * 119.97338 * 2 1 3 11 11 N 1.36605 * 111.00035 * 305.85259 * 10 2 1 12 12 S 1.65606 * 119.99587 * 110.43152 * 11 10 2 13 13 O 1.42091 * 106.40340 * 306.37267 * 12 11 10 14 14 O 1.42100 * 106.39794 * 173.45028 * 12 11 10 15 15 C 1.76201 * 107.21774 * 59.91640 * 12 11 10 16 16 H 1.08000 * 120.00301 * 354.85648 * 15 12 11 17 17 C 1.37879 * 119.99904 * 174.86168 * 15 12 11 18 18 N 1.31514 * 120.00155 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 119.99832 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47410 * 269.99597 * 19 17 15 21 21 H 1.48501 * 109.47320 * 29.99995 * 19 17 15 22 22 H 1.48503 * 109.47025 * 149.99603 * 19 17 15 23 23 H 1.09003 * 109.46831 * 302.00851 * 1 2 3 24 24 H 1.08999 * 109.47068 * 62.00719 * 1 2 3 25 25 H 1.08993 * 109.46808 * 182.00938 * 1 2 3 26 26 H 1.08997 * 109.50286 * 60.86569 * 4 2 1 27 27 H 1.08996 * 109.53924 * 300.76646 * 4 2 1 28 28 H 1.08996 * 109.52478 * 297.74841 * 5 4 2 29 29 H 1.09004 * 109.52071 * 177.56238 * 5 4 2 30 30 H 1.08999 * 109.50395 * 182.40264 * 6 5 4 31 31 H 1.08995 * 109.51031 * 62.28422 * 6 5 4 32 32 H 1.08999 * 109.47324 * 306.37150 * 9 7 6 33 33 H 1.08997 * 109.46960 * 66.37423 * 9 7 6 34 34 H 1.09000 * 109.47061 * 186.37380 * 9 7 6 35 35 H 0.96994 * 120.00205 * 290.42931 * 11 10 2 36 36 H 0.96996 * 119.99833 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7359 -1.2356 6 6 4.0548 -1.4187 0.0466 7 6 3.4865 -0.6776 1.2590 8 1 3.8403 0.3533 1.2531 9 6 3.9512 -1.3687 2.5425 10 7 2.0193 -0.6917 1.1993 11 7 1.4782 -0.1512 2.3312 12 16 0.3779 -1.0155 3.2171 13 8 -0.6452 -1.4088 2.3129 14 8 0.1270 -0.2590 4.3935 15 6 1.1769 -2.4967 3.7392 16 1 2.1746 -2.7229 3.3933 17 6 0.5282 -3.3670 4.5894 18 7 -0.6867 -3.0915 5.0110 19 14 1.3749 -4.9376 5.1423 20 1 1.0632 -6.0308 4.1869 21 1 2.8433 -4.7201 5.1838 22 1 0.8914 -5.3104 6.4960 23 1 -0.3633 0.5447 0.8715 24 1 -0.3633 0.4823 -0.9074 25 1 -0.3633 -1.0270 0.0360 26 1 1.6895 -0.1981 -2.1399 27 1 1.6659 -1.7446 -1.2584 28 1 3.9457 0.2871 -1.2672 29 1 3.9379 -1.2862 -2.1021 30 1 5.1439 -1.3946 0.0830 31 1 3.7126 -2.4534 0.0594 32 1 3.6964 -2.4275 2.4978 33 1 5.0308 -1.2587 2.6439 34 1 3.4573 -0.9121 3.4003 35 1 1.7383 0.7387 2.6160 36 1 -1.1428 -3.7036 5.6094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147789272.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:26 Heat of formation + Delta-G solvation = -103.549212 kcal Electronic energy + Delta-G solvation = -19705.867766 eV Core-core repulsion = 16736.626331 eV Total energy + Delta-G solvation = -2969.241435 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.65130 -37.29448 -36.05478 -35.76834 -35.10652 -34.38094 -30.90189 -28.73924 -28.13596 -27.01000 -23.22443 -22.07139 -21.21233 -20.64594 -19.32409 -18.25238 -18.05059 -16.87328 -16.82628 -15.87494 -15.59104 -15.09116 -15.05104 -14.79542 -14.47141 -13.94916 -13.60718 -13.32881 -13.08888 -12.96450 -12.80594 -12.65019 -12.55201 -12.47284 -12.37214 -12.20020 -12.02471 -11.71720 -11.54914 -11.49288 -11.17633 -11.12546 -10.85103 -10.30906 -9.56748 -8.66380 -7.32982 0.37298 1.36002 1.37969 1.52339 2.23376 2.62753 2.74840 3.31851 3.83992 3.91943 3.95730 4.07966 4.18958 4.36548 4.40001 4.53220 4.73814 4.76434 4.78563 4.83340 4.94299 4.98697 5.08642 5.09965 5.17987 5.28346 5.33913 5.35860 5.43733 5.50132 5.54682 5.65758 6.12451 6.15877 6.90108 7.08731 8.30145 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.009031 C = 0.007600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.571199 B = 3099.573954 C = 3683.325215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 H 0.055 0.945 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.109 4.109 7 C 0.062 3.938 8 H 0.057 0.943 9 C -0.153 4.153 10 N -0.285 5.285 11 N -0.964 5.964 12 S 2.739 3.261 13 O -1.028 7.028 14 O -1.046 7.046 15 C -1.022 5.022 16 H 0.131 0.869 17 C 0.070 3.930 18 N -0.901 5.901 19 Si 0.984 3.016 20 H -0.257 1.257 21 H -0.245 1.245 22 H -0.267 1.267 23 H 0.027 0.973 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.385 0.615 36 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.775 3.314 -11.315 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.050 4.050 3 H 0.073 0.927 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.148 4.148 7 C -0.047 4.047 8 H 0.075 0.925 9 C -0.211 4.211 10 N -0.108 5.108 11 N -0.809 5.809 12 S 2.839 3.161 13 O -1.017 7.017 14 O -1.036 7.036 15 C -1.157 5.157 16 H 0.149 0.851 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.803 3.197 20 H -0.182 1.182 21 H -0.168 1.168 22 H -0.192 1.192 23 H 0.046 0.954 24 H 0.099 0.901 25 H 0.072 0.928 26 H 0.110 0.890 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.220 0.780 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.480 2.965 -11.087 15.542 hybrid contribution 0.539 0.294 0.905 1.094 sum 11.020 3.258 -10.182 15.353 Atomic orbital electron populations 1.21884 0.94860 1.02592 1.00846 1.22278 0.95525 0.96633 0.90547 0.92662 1.21661 0.96654 1.01024 0.95368 1.21614 0.94347 1.01522 0.97869 1.21685 1.01061 0.99644 0.92397 1.22255 0.85677 0.99405 0.97374 0.92462 1.22030 1.01501 1.01072 0.96473 1.63125 1.07861 1.47034 0.92762 1.55752 1.63432 1.27814 1.33949 0.99531 0.72016 0.74248 0.70291 1.93299 1.58052 1.84064 1.66291 1.93329 1.85515 1.75065 1.49644 1.30995 1.16408 1.27005 1.41263 0.85104 1.25956 0.94099 1.02523 0.91573 1.70015 1.13446 1.39306 1.30530 0.85219 0.79943 0.76345 0.78218 1.18171 1.16846 1.19162 0.95394 0.90061 0.92813 0.89028 0.92059 0.90983 0.89498 0.88714 0.91834 0.92540 0.89750 0.93728 0.77975 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 7.81 71.98 0.56 -4.54 16 2 C 0.06 1.78 2.63 44.94 0.12 1.90 16 3 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 4 C -0.11 -2.52 5.37 30.65 0.16 -2.35 16 5 C -0.12 -2.12 6.00 30.67 0.18 -1.94 16 6 C -0.11 -2.38 5.37 30.64 0.16 -2.21 16 7 C 0.06 1.72 2.63 44.94 0.12 1.84 16 8 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 9 C -0.15 -4.69 8.05 71.98 0.58 -4.11 16 10 N -0.29 -10.15 4.53 -469.58 -2.13 -12.28 16 11 N -0.96 -39.56 3.03 37.02 0.11 -39.45 16 12 S 2.74 149.76 5.07 -56.49 -0.29 149.48 16 13 O -1.03 -61.23 14.96 -128.00 -1.92 -63.14 16 14 O -1.05 -64.07 17.90 -128.00 -2.29 -66.37 16 15 C -1.02 -56.52 9.37 67.73 0.63 -55.88 16 16 H 0.13 6.51 4.69 -2.91 -0.01 6.50 16 17 C 0.07 3.95 5.46 84.66 0.46 4.42 16 18 N -0.90 -54.66 13.09 21.45 0.28 -54.38 16 19 Si 0.98 41.99 29.54 68.60 2.03 44.01 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 23 H 0.03 1.09 6.85 -2.39 -0.02 1.07 16 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.05 2.25 7.09 -2.39 -0.02 2.24 16 26 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.90 6.54 -2.39 -0.02 1.89 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.57 6.87 -2.39 -0.02 1.55 16 35 H 0.38 13.85 8.95 -219.54 -1.97 11.89 16 36 H 0.30 16.18 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -75.44 292.86 -2.10 -77.55 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.89 Total: 27.46 kcal Atomic # 6 Polarization: -65.87 SS G_CDS: 2.99 Total: -62.89 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -1.73 Total: -106.11 kcal Atomic # 8 Polarization: -125.30 SS G_CDS: -4.21 Total: -129.51 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 149.76 SS G_CDS: -0.29 Total: 149.48 kcal Total: -75.44 -2.10 -77.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147789272.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.004 kcal (2) G-P(sol) polarization free energy of solvation -75.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds