Wall clock time and date at job start Mon Mar 30 2020 04:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46546 * 2 1 4 4 C 1.53037 * 109.46087 * 240.01634 * 2 1 3 5 5 C 1.53126 * 109.27801 * 180.81557 * 4 2 1 6 6 C 1.53124 * 109.15878 * 57.65645 * 5 4 2 7 7 C 1.53035 * 109.27794 * 302.34791 * 6 5 4 8 8 H 1.09002 * 109.46192 * 179.19659 * 7 6 5 9 9 C 1.52998 * 109.45624 * 299.16746 * 7 6 5 10 10 N 1.46844 * 109.52494 * 59.18054 * 7 6 5 11 11 N 1.36601 * 111.00181 * 174.16228 * 10 7 6 12 12 S 1.65601 * 119.99972 * 244.21118 * 11 10 7 13 13 O 1.42094 * 106.40469 * 173.53675 * 12 11 10 14 14 O 1.42107 * 106.39859 * 306.45647 * 12 11 10 15 15 C 1.76198 * 107.21839 * 59.99282 * 12 11 10 16 16 H 1.08000 * 120.00209 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00091 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00028 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00252 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.46959 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46892 * 120.00078 * 19 17 15 22 22 H 1.48500 * 109.47085 * 239.99995 * 19 17 15 23 23 H 1.09001 * 109.46946 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47334 * 299.97673 * 1 2 3 25 25 H 1.08992 * 109.46901 * 59.98389 * 1 2 3 26 26 H 1.09000 * 109.50480 * 60.88073 * 4 2 1 27 27 H 1.08992 * 109.50737 * 300.75501 * 4 2 1 28 28 H 1.08998 * 109.52297 * 177.56592 * 5 4 2 29 29 H 1.08999 * 109.51925 * 297.75795 * 5 4 2 30 30 H 1.08999 * 109.50059 * 62.28737 * 6 5 4 31 31 H 1.08993 * 109.49981 * 182.40384 * 6 5 4 32 32 H 1.08998 * 109.47860 * 180.02562 * 9 7 6 33 33 H 1.09007 * 109.47322 * 300.05249 * 9 7 6 34 34 H 1.08999 * 109.47285 * 60.04895 * 9 7 6 35 35 H 0.97004 * 120.00176 * 64.20516 * 11 10 7 36 36 H 0.97002 * 120.00674 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2498 5 6 3.5710 -0.7365 -1.2354 6 6 4.0546 -1.4193 0.0471 7 6 3.4862 -0.6780 1.2593 8 1 3.8171 -1.1702 2.1739 9 6 3.9832 0.7690 1.2508 10 7 2.0191 -0.6918 1.1995 11 7 1.4778 -0.1512 2.3312 12 16 0.5654 -1.0919 3.3436 13 8 0.2817 -0.2946 4.4851 14 8 -0.4449 -1.6844 2.5388 15 6 1.5946 -2.4093 3.9001 16 1 2.6189 -2.4734 3.5639 17 6 1.0922 -3.3585 4.7648 18 7 -0.1553 -3.2808 5.1739 19 14 2.1835 -4.7549 5.3554 20 1 3.5341 -4.6159 4.7541 21 1 2.2936 -4.7050 6.8356 22 1 1.5903 -6.0535 4.9467 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5135 0.8902 25 1 -0.3633 0.5141 -0.8898 26 1 1.6897 -0.1984 -2.1399 27 1 1.6658 -1.7448 -1.2574 28 1 3.9379 -1.2868 -2.1017 29 1 3.9458 0.2865 -1.2669 30 1 3.7121 -2.4540 0.0598 31 1 5.1436 -1.3953 0.0836 32 1 3.5789 1.2972 2.1143 33 1 5.0723 0.7795 1.2952 34 1 3.6521 1.2615 0.3365 35 1 1.6280 0.7837 2.5419 36 1 -0.5089 -3.9488 5.7819 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147789654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:33 Heat of formation + Delta-G solvation = -77.479902 kcal Electronic energy + Delta-G solvation = -19605.984486 eV Core-core repulsion = 16637.873501 eV Total energy + Delta-G solvation = -2968.110984 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.69173 -35.09695 -34.51246 -33.84433 -33.02395 -32.84874 -29.63647 -27.05799 -26.31749 -26.01571 -22.57207 -21.40245 -18.91959 -18.82193 -17.45608 -16.73974 -16.04826 -15.34352 -14.98555 -14.67426 -14.03696 -13.81087 -13.55800 -13.28513 -13.23300 -12.49485 -12.24339 -11.94250 -11.73995 -11.54137 -11.37011 -11.18141 -11.16745 -10.72976 -10.64004 -10.52749 -10.44663 -10.23703 -10.15956 -10.02877 -9.96821 -9.16816 -9.00762 -8.50860 -8.21183 -6.61043 -5.18426 2.34390 3.11218 3.18905 3.26184 4.01878 4.28147 4.74701 4.80564 4.98513 5.02013 5.18330 5.26336 5.41116 5.54403 5.61957 5.65103 5.70224 5.85023 5.94276 6.02008 6.05112 6.07117 6.16517 6.25136 6.31274 6.43289 6.44215 6.56751 6.81678 6.85674 7.05902 7.37331 7.43896 8.11280 8.59297 8.99825 10.33623 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.008534 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.322830 B = 3280.295809 C = 3791.987572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.060 3.940 3 H 0.044 0.956 4 C -0.110 4.110 5 C -0.123 4.123 6 C -0.110 4.110 7 C 0.055 3.945 8 H 0.096 0.904 9 C -0.186 4.186 10 N -0.255 5.255 11 N -0.976 5.976 12 S 2.733 3.267 13 O -1.009 7.009 14 O -0.992 6.992 15 C -1.004 5.004 16 H 0.102 0.898 17 C 0.132 3.868 18 N -0.850 5.850 19 Si 0.919 3.081 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.272 1.272 23 H 0.079 0.921 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.373 0.627 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.047 4.986 -10.749 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.049 4.049 3 H 0.062 0.938 4 C -0.149 4.149 5 C -0.161 4.161 6 C -0.149 4.149 7 C -0.055 4.055 8 H 0.114 0.886 9 C -0.244 4.244 10 N -0.075 5.075 11 N -0.819 5.819 12 S 2.832 3.168 13 O -0.998 6.998 14 O -0.981 6.981 15 C -1.138 5.138 16 H 0.121 0.879 17 C -0.085 4.085 18 N -0.480 5.480 19 Si 0.743 3.257 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.197 1.197 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.206 0.794 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.747 4.445 -10.460 13.217 hybrid contribution 1.575 0.285 0.497 1.676 sum 8.321 4.730 -9.963 13.816 Atomic orbital electron populations 1.21819 0.93453 1.04172 1.00673 1.22124 0.96571 0.95890 0.90328 0.93777 1.21623 0.95136 1.02042 0.96068 1.21648 0.96055 1.00562 0.97792 1.21591 0.99528 1.00546 0.93257 1.22337 0.87968 0.95062 1.00108 0.88634 1.22443 1.01678 0.98409 1.01907 1.63229 1.05207 1.45734 0.93306 1.56659 1.71351 1.21658 1.32204 1.00108 0.72827 0.73308 0.70560 1.93394 1.84672 1.72454 1.49299 1.93336 1.57434 1.77302 1.70051 1.30469 1.13485 1.29238 1.40627 0.87944 1.24735 0.94686 0.97225 0.91862 1.69903 1.13837 1.35179 1.29130 0.86165 0.80703 0.80197 0.78638 1.18663 1.19850 1.19701 0.90171 0.92741 0.93081 0.91605 0.90447 0.91943 0.92231 0.90467 0.91527 0.92486 0.92110 0.92136 0.79407 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.46 37.16 0.31 -2.08 16 2 C 0.06 0.92 2.34 -67.72 -0.16 0.76 16 3 H 0.04 0.62 6.19 -51.93 -0.32 0.30 16 4 C -0.11 -1.40 5.37 -26.65 -0.14 -1.54 16 5 C -0.12 -1.37 5.70 -26.60 -0.15 -1.52 16 6 C -0.11 -1.41 5.61 -26.65 -0.15 -1.56 16 7 C 0.05 0.84 3.15 -67.73 -0.21 0.63 16 8 H 0.10 1.61 7.58 -51.93 -0.39 1.22 16 9 C -0.19 -2.38 8.29 37.16 0.31 -2.07 16 10 N -0.25 -4.61 4.64 -99.77 -0.46 -5.08 16 11 N -0.98 -19.83 3.92 60.35 0.24 -19.59 16 12 S 2.73 72.83 5.18 -107.50 -0.56 72.27 16 13 O -1.01 -29.70 18.02 -57.17 -1.03 -30.73 16 14 O -0.99 -28.76 17.04 -57.17 -0.97 -29.74 16 15 C -1.00 -27.82 9.75 30.60 0.30 -27.52 16 16 H 0.10 2.62 7.25 -52.49 -0.38 2.24 16 17 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 18 N -0.85 -25.25 13.19 55.43 0.73 -24.52 16 19 Si 0.92 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 23 H 0.08 1.53 7.82 -51.93 -0.41 1.12 16 24 H 0.05 0.98 7.46 -51.93 -0.39 0.60 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.76 7.05 -51.93 -0.37 0.40 16 33 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.06 0.71 4.80 -51.93 -0.25 0.47 16 35 H 0.37 6.66 7.80 -178.80 -1.39 5.26 16 36 H 0.29 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 294.78 15.07 4.44 4.44 Total: -1.00 -34.14 294.78 -8.96 -43.10 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.33 Total: 5.29 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 0.01 Total: -31.29 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.50 Total: -49.19 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -2.00 Total: -60.47 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 72.83 SS G_CDS: -0.56 Total: 72.27 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.14 -8.96 -43.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147789654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.378 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds