Wall clock time and date at job start Mon Mar 30 2020 04:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46546 * 2 1 4 4 C 1.53037 * 109.46087 * 240.01634 * 2 1 3 5 5 C 1.53126 * 109.27801 * 180.81557 * 4 2 1 6 6 C 1.53124 * 109.15878 * 57.65645 * 5 4 2 7 7 C 1.53035 * 109.27794 * 302.34791 * 6 5 4 8 8 H 1.09002 * 109.46192 * 179.19659 * 7 6 5 9 9 C 1.52998 * 109.45624 * 299.16746 * 7 6 5 10 10 N 1.46844 * 109.52494 * 59.18054 * 7 6 5 11 11 N 1.36601 * 111.00181 * 174.16228 * 10 7 6 12 12 S 1.65601 * 119.99972 * 244.21118 * 11 10 7 13 13 O 1.42094 * 106.40469 * 173.53675 * 12 11 10 14 14 O 1.42107 * 106.39859 * 306.45647 * 12 11 10 15 15 C 1.76198 * 107.21839 * 59.99282 * 12 11 10 16 16 H 1.08000 * 120.00209 * 0.02562 * 15 12 11 17 17 C 1.37878 * 120.00091 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00028 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00252 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.46959 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46892 * 120.00078 * 19 17 15 22 22 H 1.48500 * 109.47085 * 239.99995 * 19 17 15 23 23 H 1.09001 * 109.46946 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47334 * 299.97673 * 1 2 3 25 25 H 1.08992 * 109.46901 * 59.98389 * 1 2 3 26 26 H 1.09000 * 109.50480 * 60.88073 * 4 2 1 27 27 H 1.08992 * 109.50737 * 300.75501 * 4 2 1 28 28 H 1.08998 * 109.52297 * 177.56592 * 5 4 2 29 29 H 1.08999 * 109.51925 * 297.75795 * 5 4 2 30 30 H 1.08999 * 109.50059 * 62.28737 * 6 5 4 31 31 H 1.08993 * 109.49981 * 182.40384 * 6 5 4 32 32 H 1.08998 * 109.47860 * 180.02562 * 9 7 6 33 33 H 1.09007 * 109.47322 * 300.05249 * 9 7 6 34 34 H 1.08999 * 109.47285 * 60.04895 * 9 7 6 35 35 H 0.97004 * 120.00176 * 64.20516 * 11 10 7 36 36 H 0.97002 * 120.00674 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2498 5 6 3.5710 -0.7365 -1.2354 6 6 4.0546 -1.4193 0.0471 7 6 3.4862 -0.6780 1.2593 8 1 3.8171 -1.1702 2.1739 9 6 3.9832 0.7690 1.2508 10 7 2.0191 -0.6918 1.1995 11 7 1.4778 -0.1512 2.3312 12 16 0.5654 -1.0919 3.3436 13 8 0.2817 -0.2946 4.4851 14 8 -0.4449 -1.6844 2.5388 15 6 1.5946 -2.4093 3.9001 16 1 2.6189 -2.4734 3.5639 17 6 1.0922 -3.3585 4.7648 18 7 -0.1553 -3.2808 5.1739 19 14 2.1835 -4.7549 5.3554 20 1 3.5341 -4.6159 4.7541 21 1 2.2936 -4.7050 6.8356 22 1 1.5903 -6.0535 4.9467 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5135 0.8902 25 1 -0.3633 0.5141 -0.8898 26 1 1.6897 -0.1984 -2.1399 27 1 1.6658 -1.7448 -1.2574 28 1 3.9379 -1.2868 -2.1017 29 1 3.9458 0.2865 -1.2669 30 1 3.7121 -2.4540 0.0598 31 1 5.1436 -1.3953 0.0836 32 1 3.5789 1.2972 2.1143 33 1 5.0723 0.7795 1.2952 34 1 3.6521 1.2615 0.3365 35 1 1.6280 0.7837 2.5419 36 1 -0.5089 -3.9488 5.7819 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147789654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:33 Heat of formation + Delta-G solvation = -104.224092 kcal Electronic energy + Delta-G solvation = -19607.144201 eV Core-core repulsion = 16637.873501 eV Total energy + Delta-G solvation = -2969.270700 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92567 -37.31361 -36.06525 -35.84207 -35.10206 -34.06778 -30.88090 -28.41699 -28.17549 -27.40994 -23.67391 -22.62029 -20.93706 -20.04179 -19.35954 -18.25705 -18.02018 -16.92733 -16.60869 -15.94340 -15.77098 -15.58956 -15.00658 -14.52783 -14.37918 -13.95768 -13.60753 -13.33962 -13.27525 -13.00520 -12.94970 -12.71433 -12.66934 -12.46050 -12.43317 -12.26902 -12.22566 -11.76594 -11.51625 -11.32736 -11.22333 -11.14511 -10.88717 -10.31530 -9.53078 -8.71030 -7.39372 0.34348 1.34066 1.35064 1.52630 2.21401 2.61059 2.72389 3.33224 3.80876 3.93214 3.97762 4.01875 4.18263 4.31714 4.46812 4.53843 4.60177 4.64839 4.79134 4.80543 4.88150 5.00314 5.03725 5.11287 5.16518 5.18089 5.29574 5.33128 5.41382 5.43328 5.48300 5.68006 5.99984 6.15315 6.84240 7.08301 8.26226 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.008534 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.322830 B = 3280.295809 C = 3791.987572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 H 0.065 0.935 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.109 4.109 7 C 0.047 3.953 8 H 0.072 0.928 9 C -0.180 4.180 10 N -0.283 5.283 11 N -0.964 5.964 12 S 2.743 3.257 13 O -1.047 7.047 14 O -1.026 7.026 15 C -1.023 5.023 16 H 0.116 0.884 17 C 0.069 3.931 18 N -0.898 5.898 19 Si 0.989 3.011 20 H -0.247 1.247 21 H -0.261 1.261 22 H -0.260 1.260 23 H 0.047 0.953 24 H 0.030 0.970 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.384 0.616 36 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.633 5.079 -12.397 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.051 4.051 3 H 0.083 0.917 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.148 4.148 7 C -0.062 4.062 8 H 0.090 0.910 9 C -0.238 4.238 10 N -0.104 5.104 11 N -0.810 5.810 12 S 2.843 3.157 13 O -1.036 7.036 14 O -1.015 7.015 15 C -1.157 5.157 16 H 0.134 0.866 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.807 3.193 20 H -0.170 1.170 21 H -0.185 1.185 22 H -0.185 1.185 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.221 0.779 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.329 4.570 -12.114 15.958 hybrid contribution 0.762 0.315 0.933 1.245 sum 10.091 4.885 -11.181 15.834 Atomic orbital electron populations 1.21848 0.95033 1.02193 1.01265 1.22267 0.95381 0.97272 0.90188 0.91670 1.21663 0.96590 1.00968 0.95477 1.21641 0.94463 1.01744 0.97509 1.21628 1.00915 0.99312 0.92934 1.22434 0.86136 0.97085 1.00535 0.91008 1.22391 1.03005 0.96279 1.02142 1.63249 1.07205 1.46962 0.92955 1.55753 1.71063 1.21458 1.32752 0.99439 0.72949 0.73154 0.70195 1.93330 1.85675 1.73157 1.51437 1.93288 1.59406 1.78225 1.70624 1.30795 1.14230 1.29797 1.40876 0.86555 1.25988 0.96200 1.00336 0.91776 1.69994 1.15974 1.36801 1.30259 0.85128 0.79022 0.76422 0.78723 1.17020 1.18491 1.18470 0.93405 0.95067 0.89585 0.88809 0.92275 0.89716 0.90432 0.92239 0.88971 0.93663 0.89927 0.90595 0.77926 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 8.46 71.98 0.61 -4.25 16 2 C 0.06 1.68 2.34 44.94 0.11 1.79 16 3 H 0.07 1.64 6.19 -2.39 -0.01 1.62 16 4 C -0.11 -2.46 5.37 30.65 0.16 -2.30 16 5 C -0.12 -2.13 5.70 30.68 0.17 -1.95 16 6 C -0.11 -2.49 5.61 30.65 0.17 -2.32 16 7 C 0.05 1.38 3.15 44.94 0.14 1.52 16 8 H 0.07 2.39 7.58 -2.39 -0.02 2.37 16 9 C -0.18 -4.10 8.29 71.98 0.60 -3.50 16 10 N -0.28 -10.14 4.64 -469.57 -2.18 -12.32 16 11 N -0.96 -39.87 3.92 37.02 0.14 -39.72 16 12 S 2.74 151.53 5.18 -56.49 -0.29 151.24 16 13 O -1.05 -64.10 18.02 -128.00 -2.31 -66.41 16 14 O -1.03 -62.28 17.04 -128.00 -2.18 -64.46 16 15 C -1.02 -57.69 9.75 67.73 0.66 -57.03 16 16 H 0.12 6.00 7.25 -2.91 -0.02 5.98 16 17 C 0.07 3.92 5.46 84.65 0.46 4.38 16 18 N -0.90 -54.71 13.19 21.45 0.28 -54.43 16 19 Si 0.99 42.32 29.54 68.60 2.03 44.35 16 20 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 23 H 0.05 1.88 7.82 -2.39 -0.02 1.86 16 24 H 0.03 1.14 7.46 -2.39 -0.02 1.13 16 25 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.19 6.56 -2.39 -0.02 1.18 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.13 7.05 -2.39 -0.02 1.11 16 33 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.08 1.49 4.80 -2.39 -0.01 1.48 16 35 H 0.38 13.93 7.80 -219.53 -1.71 12.22 16 36 H 0.30 16.23 8.31 -92.71 -0.77 15.46 16 Total: -1.00 -76.59 294.78 -2.05 -78.64 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -0.63 Total: 26.79 kcal Atomic # 6 Polarization: -66.76 SS G_CDS: 3.09 Total: -63.67 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -1.75 Total: -106.48 kcal Atomic # 8 Polarization: -126.39 SS G_CDS: -4.49 Total: -130.88 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 151.53 SS G_CDS: -0.29 Total: 151.24 kcal Total: -76.59 -2.05 -78.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147789654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.581 kcal (2) G-P(sol) polarization free energy of solvation -76.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds