Wall clock time and date at job start Mon Mar 30 2020 04:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.45099 * 2 1 4 4 C 1.53042 * 109.45944 * 240.09213 * 2 1 3 5 5 C 1.53121 * 109.27200 * 180.86667 * 4 2 1 6 6 H 1.09002 * 109.52529 * 297.62086 * 5 4 2 7 7 N 1.46496 * 109.52495 * 177.49545 * 5 4 2 8 8 S 1.65599 * 120.00141 * 145.12698 * 7 5 4 9 9 O 1.42106 * 106.40227 * 311.45608 * 8 7 5 10 10 O 1.42100 * 106.40324 * 178.54122 * 8 7 5 11 11 C 1.76199 * 107.21905 * 64.99953 * 8 7 5 12 12 H 1.07999 * 119.99976 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99614 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00338 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99426 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.47555 * 90.00165 * 15 13 11 17 17 H 1.48503 * 109.46814 * 210.00053 * 15 13 11 18 18 H 1.48496 * 109.47318 * 329.99545 * 15 13 11 19 19 C 1.53116 * 109.21370 * 57.55601 * 5 4 2 20 20 C 1.53033 * 109.28135 * 302.38047 * 19 5 4 21 21 N 1.46840 * 109.46317 * 119.97310 * 2 1 3 22 22 C 1.46901 * 111.00212 * 305.85800 * 21 2 1 23 23 H 1.08997 * 109.47251 * 300.02619 * 1 2 3 24 24 H 1.08999 * 109.47541 * 60.02982 * 1 2 3 25 25 H 1.09007 * 109.47069 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.55952 * 60.89824 * 4 2 1 27 27 H 1.08997 * 109.45077 * 300.77082 * 4 2 1 28 28 H 0.97005 * 119.99711 * 325.12353 * 7 5 4 29 29 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 30 30 H 1.09003 * 109.50503 * 62.31846 * 19 5 4 31 31 H 1.09005 * 109.50687 * 182.39875 * 19 5 4 32 32 H 1.08998 * 109.46560 * 179.19297 * 20 19 5 33 33 H 1.09000 * 109.46356 * 299.16094 * 20 19 5 34 34 H 1.09001 * 109.46821 * 291.83846 * 22 21 2 35 35 H 1.08999 * 109.47222 * 51.83544 * 22 21 2 36 36 H 1.09002 * 109.47604 * 171.84038 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7195 -1.2508 5 6 3.5709 -0.7360 -1.2356 6 1 3.9466 0.2868 -1.2678 7 7 4.0642 -1.4755 -2.4001 8 16 5.4625 -1.0019 -3.1502 9 8 5.3526 0.3998 -3.3561 10 8 5.6851 -1.9273 -4.2054 11 6 6.7763 -1.2343 -1.9993 12 1 6.5683 -1.6241 -1.0138 13 6 8.0699 -0.9184 -2.3568 14 7 8.3233 -0.4442 -3.5571 15 14 9.4628 -1.1654 -1.1369 16 1 10.0184 -2.5339 -1.2903 17 1 10.5303 -0.1660 -1.3955 18 1 8.9471 -0.9925 0.2449 19 6 4.0548 -1.4186 0.0467 20 6 3.4865 -0.6776 1.2590 21 7 2.0193 -0.6917 1.1993 22 6 1.4373 -0.1106 2.4165 23 1 -0.3633 0.5142 0.8897 24 1 -0.3634 0.5134 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 1.6905 -0.1961 -2.1408 27 1 1.6650 -1.7429 -1.2590 28 1 3.5717 -2.2426 -2.7317 29 1 9.2334 -0.2223 -3.8086 30 1 3.7125 -2.4535 0.0595 31 1 5.1440 -1.3951 0.0828 32 1 3.8175 -1.1698 2.1735 33 1 3.8403 0.3533 1.2532 34 1 1.8277 0.8969 2.5607 35 1 0.3527 -0.0690 2.3166 36 1 1.6996 -0.7282 3.2755 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157976618.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:11 Heat of formation + Delta-G solvation = -125.446616 kcal Electronic energy + Delta-G solvation = -18938.514538 eV Core-core repulsion = 15968.323561 eV Total energy + Delta-G solvation = -2970.190977 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.37102 -37.41556 -36.44164 -36.13846 -35.17642 -33.32933 -31.84517 -28.37586 -27.87691 -26.71553 -23.80929 -22.24887 -21.15188 -20.65878 -19.26047 -18.27718 -17.28393 -16.87200 -16.49945 -16.19359 -15.93208 -15.47034 -15.31770 -15.14005 -14.42060 -13.99470 -13.67176 -13.52276 -13.03319 -13.00358 -12.92812 -12.77294 -12.64567 -12.55223 -12.48279 -12.43654 -12.28482 -11.95479 -11.83787 -11.75674 -11.24028 -11.16491 -10.89355 -10.15414 -9.23512 -8.74224 -7.46143 0.37199 1.34591 1.35106 1.50773 2.21186 2.59596 2.95251 3.00023 3.69238 3.79508 3.90176 4.00038 4.16540 4.33205 4.37652 4.53580 4.54703 4.55958 4.65261 4.72995 4.84647 4.88616 4.93390 4.97704 5.04458 5.12568 5.23290 5.24571 5.37998 5.40939 5.51430 5.95922 6.16669 6.21940 6.42810 6.80366 8.22504 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026666 B = 0.006723 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.754974 B = 4163.662112 C = 4913.697367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.079 3.921 3 H 0.033 0.967 4 C -0.110 4.110 5 C 0.149 3.851 6 H 0.062 0.938 7 N -1.115 6.115 8 S 2.716 3.284 9 O -1.047 7.047 10 O -1.048 7.048 11 C -1.034 5.034 12 H 0.127 0.873 13 C 0.069 3.931 14 N -0.896 5.896 15 Si 0.989 3.011 16 H -0.256 1.256 17 H -0.265 1.265 18 H -0.245 1.245 19 C -0.138 4.138 20 C 0.060 3.940 21 N -0.543 5.543 22 C 0.018 3.982 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.415 0.585 29 H 0.298 0.702 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.028 0.972 34 H 0.023 0.977 35 H 0.087 0.913 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.574 -0.632 13.000 18.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.030 4.030 3 H 0.051 0.949 4 C -0.149 4.149 5 C 0.042 3.958 6 H 0.080 0.920 7 N -0.873 5.873 8 S 2.818 3.182 9 O -1.036 7.036 10 O -1.038 7.038 11 C -1.168 5.168 12 H 0.145 0.855 13 C -0.143 4.143 14 N -0.528 5.528 15 Si 0.807 3.193 16 H -0.180 1.180 17 H -0.190 1.190 18 H -0.167 1.167 19 C -0.177 4.177 20 C -0.068 4.068 21 N -0.268 5.268 22 C -0.130 4.130 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.249 0.751 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.047 0.953 34 H 0.041 0.959 35 H 0.106 0.894 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.493 -0.541 11.966 17.307 hybrid contribution 1.283 0.389 0.356 1.388 sum -11.210 -0.152 12.322 16.658 Atomic orbital electron populations 1.21887 0.92070 1.03095 1.02716 1.21641 0.96986 0.94821 0.89581 0.94891 1.21914 0.92338 1.02814 0.97835 1.20844 0.96017 0.94353 0.84583 0.92017 1.55403 1.43160 1.44256 1.44469 0.99944 0.72888 0.71702 0.73697 1.93299 1.87553 1.35867 1.86919 1.93306 1.86239 1.65857 1.58403 1.30979 1.09642 1.58053 1.18118 0.85509 1.26024 1.02623 0.88410 0.97276 1.70003 1.25143 1.36707 1.20926 0.85149 0.75965 0.79489 0.78713 1.17971 1.18954 1.16748 1.22214 1.00875 1.01130 0.93520 1.22044 0.87467 0.98715 0.98594 1.62004 1.06784 1.55226 1.02822 1.22539 1.01196 0.97471 0.91745 0.91001 0.91461 0.91395 0.90873 0.89484 0.75104 0.89216 0.89867 0.91417 0.88888 0.95338 0.95860 0.89439 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.79 71.98 0.63 -1.73 16 2 C 0.08 1.81 2.44 44.94 0.11 1.92 16 3 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 4 C -0.11 -2.93 4.91 30.65 0.15 -2.78 16 5 C 0.15 5.16 2.85 45.07 0.13 5.29 16 6 H 0.06 2.44 7.51 -2.39 -0.02 2.42 16 7 N -1.12 -44.48 5.48 -169.06 -0.93 -45.40 16 8 S 2.72 147.76 5.00 -56.49 -0.28 147.47 16 9 O -1.05 -63.55 17.36 -128.00 -2.22 -65.78 16 10 O -1.05 -63.74 18.02 -128.00 -2.31 -66.05 16 11 C -1.03 -56.42 9.59 67.73 0.65 -55.77 16 12 H 0.13 6.14 5.68 -2.91 -0.02 6.12 16 13 C 0.07 3.85 5.46 84.66 0.46 4.31 16 14 N -0.90 -53.92 13.19 21.45 0.28 -53.63 16 15 Si 0.99 41.13 29.54 68.60 2.03 43.15 16 16 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 17 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 18 H -0.24 -9.36 7.11 99.48 0.71 -8.65 16 19 C -0.14 -4.23 5.70 30.64 0.17 -4.06 16 20 C 0.06 1.53 5.46 86.32 0.47 2.00 16 21 N -0.54 -12.14 4.75 -897.17 -4.26 -16.40 16 22 C 0.02 0.30 9.30 127.69 1.19 1.49 16 23 H 0.07 1.00 6.15 -2.39 -0.01 0.99 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.42 14.19 8.84 -96.74 -0.85 13.34 16 29 H 0.30 16.10 8.31 -92.71 -0.77 15.33 16 30 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.07 2.32 5.84 -2.38 -0.01 2.31 16 32 H 0.09 2.02 8.12 -2.39 -0.02 2.00 16 33 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.09 1.21 5.75 -2.39 -0.01 1.20 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -75.02 298.63 -3.49 -78.52 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.22 Total: 27.45 kcal Atomic # 6 Polarization: -53.29 SS G_CDS: 3.97 Total: -49.33 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -4.90 Total: -115.44 kcal Atomic # 8 Polarization: -127.30 SS G_CDS: -4.53 Total: -131.83 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: 147.76 SS G_CDS: -0.28 Total: 147.47 kcal Total: -75.02 -3.49 -78.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157976618.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.931 kcal (2) G-P(sol) polarization free energy of solvation -75.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds