Wall clock time and date at job start Mon Mar 30 2020 04:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.46072 * 2 1 4 4 C 1.53038 * 109.46281 * 119.97476 * 2 1 3 5 5 C 1.53127 * 109.27941 * 179.18690 * 4 2 1 6 6 H 1.08997 * 109.52581 * 182.44219 * 5 4 2 7 7 N 1.46497 * 109.52079 * 62.24755 * 5 4 2 8 8 S 1.65609 * 119.99810 * 145.31720 * 7 5 4 9 9 O 1.42099 * 106.40520 * 178.54351 * 8 7 5 10 10 O 1.42104 * 106.39890 * 311.46506 * 8 7 5 11 11 C 1.76197 * 107.21704 * 65.00029 * 8 7 5 12 12 H 1.08004 * 120.00045 * 0.02562 * 11 8 7 13 13 C 1.37872 * 119.99939 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00134 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99923 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47031 * 89.99929 * 15 13 11 17 17 H 1.48495 * 109.47210 * 210.00062 * 15 13 11 18 18 H 1.48501 * 109.47340 * 329.99954 * 15 13 11 19 19 C 1.53117 * 109.15989 * 302.34585 * 5 4 2 20 20 C 1.53044 * 109.27792 * 57.65607 * 19 5 4 21 21 N 1.46830 * 109.46156 * 240.02046 * 2 1 3 22 22 C 1.46901 * 110.98168 * 54.14453 * 21 2 1 23 23 H 1.08996 * 109.47580 * 300.02377 * 1 2 3 24 24 H 1.09001 * 109.46948 * 60.02806 * 1 2 3 25 25 H 1.09005 * 109.47020 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.50308 * 59.24904 * 4 2 1 27 27 H 1.08996 * 109.53785 * 299.14736 * 4 2 1 28 28 H 0.97002 * 120.00744 * 325.32534 * 7 5 4 29 29 H 0.97010 * 119.99895 * 180.02562 * 14 13 11 30 30 H 1.09001 * 109.50874 * 297.71787 * 19 5 4 31 31 H 1.09002 * 109.53469 * 177.60908 * 19 5 4 32 32 H 1.09002 * 109.46396 * 60.83566 * 20 19 5 33 33 H 1.08994 * 109.46485 * 180.81491 * 20 19 5 34 34 H 1.09001 * 109.46924 * 180.26109 * 22 21 2 35 35 H 1.09000 * 109.46915 * 300.26098 * 22 21 2 36 36 H 1.08999 * 109.47074 * 60.26281 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5709 -0.7363 1.2355 6 1 3.9379 -1.2865 2.1018 7 7 4.0747 0.6387 1.2778 8 16 5.4743 0.9830 2.0935 9 8 5.7079 2.3739 1.9203 10 8 5.3571 0.3675 3.3689 11 6 6.7832 0.1507 1.2577 12 1 6.5722 -0.4445 0.3816 13 6 8.0768 0.2594 1.7222 14 7 8.3336 0.9837 2.7894 15 14 9.4646 -0.6225 0.8358 16 1 10.0290 0.2684 -0.2098 17 1 10.5275 -0.9776 1.8100 18 1 8.9406 -1.8591 0.2023 19 6 4.0546 -1.4191 -0.0468 20 6 3.4863 -0.6779 -1.2592 21 7 2.0191 -0.6918 -1.1992 22 6 1.4369 -0.1104 -2.4161 23 1 -0.3634 0.5142 0.8897 24 1 -0.3633 0.5134 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 1.6658 -1.7447 1.2576 27 1 1.6896 -0.1988 2.1403 28 1 3.5885 1.3476 0.8283 29 1 9.2439 1.0604 3.1160 30 1 3.7121 -2.4538 -0.0597 31 1 5.1437 -1.3956 -0.0838 32 1 3.8403 0.3531 -1.2534 33 1 3.8170 -1.1702 -2.1737 34 1 1.8122 -0.6442 -3.2893 35 1 0.3510 -0.1969 -2.3765 36 1 1.7154 0.9411 -2.4856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157976752.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:14 Heat of formation + Delta-G solvation = -123.203576 kcal Electronic energy + Delta-G solvation = -19214.383874 eV Core-core repulsion = 16244.290162 eV Total energy + Delta-G solvation = -2970.093712 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52734 -37.40578 -36.18553 -36.11809 -35.17185 -33.29851 -31.63931 -28.37691 -27.94773 -26.98168 -23.82725 -22.31963 -21.17995 -20.38693 -19.10475 -18.33090 -17.16008 -16.74009 -16.62419 -16.23999 -15.94310 -15.56169 -15.30695 -14.94723 -14.36729 -14.01978 -13.66923 -13.47193 -13.23362 -13.01010 -12.84525 -12.74510 -12.58790 -12.53582 -12.45746 -12.41178 -12.27337 -12.02631 -11.86307 -11.68435 -11.23769 -11.01250 -10.88162 -10.16955 -9.20109 -8.73728 -7.45384 0.38382 1.35102 1.35218 1.51204 2.21596 2.60263 2.96207 3.05068 3.70461 3.82431 3.90394 4.03081 4.23276 4.35680 4.38730 4.53077 4.57938 4.64555 4.69777 4.77952 4.84997 4.89634 4.96649 5.00491 5.07166 5.13946 5.18262 5.26351 5.39692 5.42571 5.50221 5.97454 6.18972 6.23906 6.37025 6.81234 8.22899 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028537 B = 0.007054 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.931100 B = 3968.448300 C = 4489.710913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.075 3.925 3 H 0.028 0.972 4 C -0.109 4.109 5 C 0.145 3.855 6 H 0.076 0.924 7 N -1.114 6.114 8 S 2.718 3.282 9 O -1.051 7.051 10 O -1.045 7.045 11 C -1.033 5.033 12 H 0.128 0.872 13 C 0.070 3.930 14 N -0.897 5.897 15 Si 0.988 3.012 16 H -0.257 1.257 17 H -0.266 1.266 18 H -0.244 1.244 19 C -0.138 4.138 20 C 0.059 3.941 21 N -0.537 5.537 22 C 0.019 3.981 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.407 0.593 29 H 0.297 0.703 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.023 0.977 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.532 -5.933 -10.083 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 H 0.046 0.954 4 C -0.148 4.148 5 C 0.038 3.962 6 H 0.094 0.906 7 N -0.873 5.873 8 S 2.819 3.181 9 O -1.041 7.041 10 O -1.035 7.035 11 C -1.166 5.166 12 H 0.146 0.854 13 C -0.143 4.143 14 N -0.529 5.529 15 Si 0.807 3.193 16 H -0.182 1.182 17 H -0.190 1.190 18 H -0.167 1.167 19 C -0.177 4.177 20 C -0.069 4.069 21 N -0.262 5.262 22 C -0.128 4.128 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.116 0.884 27 H 0.091 0.909 28 H 0.241 0.759 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -12.461 -5.928 -9.021 16.486 hybrid contribution 1.274 0.862 -0.631 1.663 sum -11.187 -5.066 -9.651 15.619 Atomic orbital electron populations 1.21869 0.92331 1.03113 1.02460 1.21666 0.96741 0.94775 0.90156 0.95368 1.21887 0.92406 1.03022 0.97513 1.20902 0.95928 0.80983 0.98407 0.90622 1.55479 1.43085 1.15837 1.72919 0.99922 0.72834 0.72356 0.73017 1.93301 1.86129 1.37083 1.87572 1.93301 1.87487 1.78750 1.43923 1.30978 1.09643 1.47866 1.28144 0.85448 1.26011 1.02552 0.92253 0.93462 1.70008 1.25029 1.35585 1.22231 0.85153 0.76041 0.79490 0.78654 1.18158 1.18985 1.16656 1.22186 1.00927 1.00634 0.93965 1.22012 0.87427 0.98740 0.98756 1.62027 1.06735 1.54882 1.02599 1.22499 1.01321 0.97001 0.92005 0.91602 0.91546 0.91135 0.88379 0.90865 0.75854 0.89252 0.88713 0.91392 0.95897 0.89572 0.90716 0.89545 0.96326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.77 71.98 0.63 -1.82 16 2 C 0.08 1.76 2.27 44.94 0.10 1.86 16 3 H 0.03 0.74 6.62 -2.38 -0.02 0.72 16 4 C -0.11 -2.82 5.07 30.65 0.16 -2.67 16 5 C 0.14 4.85 3.14 45.07 0.14 4.99 16 6 H 0.08 2.81 7.51 -2.39 -0.02 2.79 16 7 N -1.11 -44.19 4.83 -169.06 -0.82 -45.00 16 8 S 2.72 146.70 5.00 -56.49 -0.28 146.41 16 9 O -1.05 -63.83 18.02 -128.00 -2.31 -66.14 16 10 O -1.04 -62.82 17.36 -128.00 -2.22 -65.04 16 11 C -1.03 -55.85 9.56 67.73 0.65 -55.20 16 12 H 0.13 6.10 5.57 -2.91 -0.02 6.08 16 13 C 0.07 3.86 5.46 84.65 0.46 4.32 16 14 N -0.90 -53.82 13.19 21.44 0.28 -53.54 16 15 Si 0.99 41.00 29.54 68.60 2.03 43.02 16 16 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 17 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 18 H -0.24 -9.29 7.11 99.48 0.71 -8.58 16 19 C -0.14 -4.10 5.79 30.65 0.18 -3.93 16 20 C 0.06 1.56 5.32 86.33 0.46 2.02 16 21 N -0.54 -12.35 4.75 -897.21 -4.26 -16.60 16 22 C 0.02 0.36 9.06 127.69 1.16 1.52 16 23 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 1.02 6.32 -2.39 -0.02 1.00 16 25 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.41 14.54 6.99 -96.74 -0.68 13.86 16 29 H 0.30 16.07 8.31 -92.70 -0.77 15.30 16 30 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.07 2.28 5.70 -2.39 -0.01 2.27 16 32 H 0.02 0.68 7.55 -2.39 -0.02 0.67 16 33 H 0.09 2.02 8.09 -2.39 -0.02 2.00 16 34 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 35 H 0.09 1.31 6.19 -2.39 -0.01 1.30 16 36 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -74.20 294.23 -3.24 -77.44 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.41 Total: 28.36 kcal Atomic # 6 Polarization: -52.85 SS G_CDS: 3.93 Total: -48.91 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -4.79 Total: -115.15 kcal Atomic # 8 Polarization: -126.65 SS G_CDS: -4.53 Total: -131.18 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Atomic # 16 Polarization: 146.70 SS G_CDS: -0.28 Total: 146.41 kcal Total: -74.20 -3.24 -77.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157976752.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.764 kcal (2) G-P(sol) polarization free energy of solvation -74.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds