Wall clock time and date at job start Mon Mar 30 2020 04:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.46072 * 2 1 4 4 C 1.53038 * 109.46281 * 119.97476 * 2 1 3 5 5 C 1.53127 * 109.27941 * 179.18690 * 4 2 1 6 6 H 1.08998 * 109.57452 * 62.28001 * 5 4 2 7 7 N 1.46494 * 109.52288 * 182.44335 * 5 4 2 8 8 S 1.65602 * 119.99686 * 214.68294 * 7 5 4 9 9 O 1.42108 * 106.40053 * 178.53822 * 8 7 5 10 10 O 1.42099 * 106.40433 * 311.45690 * 8 7 5 11 11 C 1.76202 * 107.21919 * 65.00256 * 8 7 5 12 12 H 1.07999 * 119.99579 * 359.97438 * 11 8 7 13 13 C 1.37875 * 120.00012 * 179.97438 * 11 8 7 14 14 N 1.31517 * 119.99980 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 120.00025 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47097 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47183 * 120.00315 * 15 13 11 18 18 H 1.48505 * 109.47033 * 240.00234 * 15 13 11 19 19 C 1.53117 * 109.15989 * 302.34585 * 5 4 2 20 20 C 1.53044 * 109.27792 * 57.65607 * 19 5 4 21 21 N 1.46830 * 109.46156 * 240.02046 * 2 1 3 22 22 C 1.46901 * 110.98168 * 54.14453 * 21 2 1 23 23 H 1.08996 * 109.47580 * 300.02377 * 1 2 3 24 24 H 1.09001 * 109.46948 * 60.02806 * 1 2 3 25 25 H 1.09005 * 109.47020 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.50308 * 59.24904 * 4 2 1 27 27 H 1.09000 * 109.50697 * 299.12630 * 4 2 1 28 28 H 0.97001 * 120.00399 * 34.68207 * 7 5 4 29 29 H 0.96998 * 119.99971 * 179.97438 * 14 13 11 30 30 H 1.09001 * 109.50874 * 297.71787 * 19 5 4 31 31 H 1.09002 * 109.53469 * 177.60908 * 19 5 4 32 32 H 1.09002 * 109.46396 * 60.83566 * 20 19 5 33 33 H 1.08994 * 109.46485 * 180.81491 * 20 19 5 34 34 H 1.09001 * 109.46924 * 180.26109 * 22 21 2 35 35 H 1.09000 * 109.46915 * 300.26098 * 22 21 2 36 36 H 1.08999 * 109.47074 * 60.26281 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5709 -0.7363 1.2355 6 1 3.9467 0.2864 1.2676 7 7 4.0641 -1.4759 2.3999 8 16 5.4643 -1.0044 3.1479 9 8 5.6499 -1.8877 4.2455 10 8 6.4292 -0.8290 2.1197 11 6 5.1757 0.5914 3.8370 12 1 4.2119 1.0643 3.7188 13 6 6.1801 1.2363 4.5271 14 7 7.3538 0.6606 4.6705 15 14 5.8744 2.9284 5.2569 16 1 4.4831 3.3525 4.9576 17 1 6.0696 2.8756 6.7281 18 1 6.8272 3.9020 4.6658 19 6 4.0546 -1.4191 -0.0468 20 6 3.4863 -0.6779 -1.2592 21 7 2.0191 -0.6918 -1.1992 22 6 1.4369 -0.1104 -2.4161 23 1 -0.3634 0.5142 0.8897 24 1 -0.3633 0.5134 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 1.6658 -1.7447 1.2576 27 1 1.6896 -0.1982 2.1400 28 1 3.5706 -2.2418 2.7327 29 1 8.0606 1.1144 5.1557 30 1 3.7121 -2.4538 -0.0597 31 1 5.1437 -1.3956 -0.0838 32 1 3.8403 0.3531 -1.2534 33 1 3.8170 -1.1702 -2.1737 34 1 1.8122 -0.6442 -3.2893 35 1 0.3510 -0.1969 -2.3765 36 1 1.7154 0.9411 -2.4856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157977038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:21 Heat of formation + Delta-G solvation = -98.918645 kcal Electronic energy + Delta-G solvation = -18894.140261 eV Core-core repulsion = 15925.099623 eV Total energy + Delta-G solvation = -2969.040638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.26789 -35.35086 -34.91104 -33.90045 -33.07059 -32.31699 -30.51504 -26.94923 -26.11705 -25.72072 -22.69190 -21.05434 -19.81483 -18.83121 -17.29473 -16.26894 -15.84021 -15.46085 -15.05384 -14.84261 -14.33964 -14.16648 -13.86215 -13.40322 -13.07769 -12.66683 -12.11666 -12.07132 -11.97230 -11.83681 -11.65385 -11.30707 -11.23686 -10.98490 -10.83552 -10.67879 -10.58099 -10.51874 -10.24615 -10.14449 -9.81247 -9.25048 -8.94808 -8.46519 -8.27060 -6.69177 -5.30534 2.39073 3.05139 3.13687 3.20530 3.93891 4.06681 4.63994 4.68951 4.90022 5.02512 5.05345 5.25264 5.37974 5.43775 5.50297 5.63256 5.65144 5.75137 5.77442 5.79066 5.87649 5.92967 5.97761 6.12593 6.20913 6.31223 6.43270 6.54690 6.68620 6.96940 7.13662 7.18004 7.33632 7.94858 8.02031 8.90250 10.24990 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025479 B = 0.006459 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.685572 B = 4333.952162 C = 4799.124816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.080 3.920 3 H 0.044 0.956 4 C -0.117 4.117 5 C 0.161 3.839 6 H 0.084 0.916 7 N -1.131 6.131 8 S 2.715 3.285 9 O -1.009 7.009 10 O -1.006 7.006 11 C -1.021 5.021 12 H 0.101 0.899 13 C 0.133 3.867 14 N -0.845 5.845 15 Si 0.919 3.081 16 H -0.263 1.263 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.136 4.136 20 C 0.058 3.942 21 N -0.540 5.540 22 C 0.022 3.978 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.401 0.599 29 H 0.290 0.710 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.990 0.365 -10.076 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 H 0.061 0.939 4 C -0.156 4.156 5 C 0.053 3.947 6 H 0.102 0.898 7 N -0.884 5.884 8 S 2.814 3.186 9 O -1.000 7.000 10 O -0.996 6.996 11 C -1.154 5.154 12 H 0.120 0.880 13 C -0.085 4.085 14 N -0.475 5.475 15 Si 0.743 3.257 16 H -0.187 1.187 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.175 4.175 20 C -0.071 4.071 21 N -0.265 5.265 22 C -0.127 4.127 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.232 0.768 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -11.035 -0.500 -10.015 14.910 hybrid contribution -0.424 1.945 0.601 2.080 sum -11.459 1.446 -9.414 14.900 Atomic orbital electron populations 1.21908 0.94407 1.02471 1.01581 1.21620 0.95219 0.95723 0.90288 0.93853 1.21968 0.95285 1.01719 0.96636 1.20559 0.93447 0.95628 0.85091 0.89796 1.56050 1.47070 1.42806 1.42465 1.00414 0.70301 0.75507 0.72356 1.93371 1.84311 1.68319 1.53957 1.93353 1.58277 1.88100 1.59846 1.30607 1.07285 1.27049 1.50453 0.88031 1.24741 0.92909 0.99318 0.91544 1.69908 1.03225 1.38866 1.35482 0.86162 0.79458 0.81113 0.79004 1.18651 1.19595 1.19636 1.22181 1.01840 1.00170 0.93351 1.22093 0.86471 0.99368 0.99141 1.61992 1.07678 1.54893 1.01951 1.22408 1.00471 0.97185 0.92597 0.92102 0.92636 0.91801 0.90746 0.90721 0.76830 0.89978 0.91075 0.89649 0.94555 0.90682 0.91666 0.91152 0.95876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.77 37.15 0.33 -1.14 16 2 C 0.08 1.00 2.44 -67.74 -0.17 0.84 16 3 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.12 -1.64 4.90 -26.65 -0.13 -1.77 16 5 C 0.16 2.80 2.72 -67.81 -0.18 2.61 16 6 H 0.08 1.58 7.85 -51.93 -0.41 1.17 16 7 N -1.13 -22.38 5.48 -4.79 -0.03 -22.40 16 8 S 2.71 71.75 4.93 -107.50 -0.53 71.22 16 9 O -1.01 -29.78 18.02 -57.17 -1.03 -30.81 16 10 O -1.01 -29.00 17.33 -57.17 -0.99 -29.99 16 11 C -1.02 -27.99 9.58 30.60 0.29 -27.70 16 12 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 13 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 14 N -0.85 -24.95 13.19 55.43 0.73 -24.22 16 15 Si 0.92 20.59 29.54 -169.99 -5.02 15.56 16 16 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 C -0.14 -2.18 5.70 -26.65 -0.15 -2.33 16 20 C 0.06 0.78 5.47 -3.83 -0.02 0.76 16 21 N -0.54 -6.71 4.75 -234.94 -1.11 -7.83 16 22 C 0.02 0.22 9.06 60.07 0.54 0.76 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.49 6.32 -51.93 -0.33 0.17 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.40 6.91 8.84 -34.47 -0.30 6.60 16 29 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.54 7.69 -51.93 -0.40 1.15 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 35 H 0.07 0.62 6.19 -51.93 -0.32 0.30 16 36 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 LS Contribution 302.99 15.07 4.57 4.57 Total: -1.00 -34.19 302.99 -8.53 -42.72 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.53 Total: 5.53 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 0.41 Total: -24.36 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.41 Total: -54.45 kcal Atomic # 8 Polarization: -58.78 SS G_CDS: -2.02 Total: -60.80 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 71.75 SS G_CDS: -0.53 Total: 71.22 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.19 -8.53 -42.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157977038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.198 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds