Wall clock time and date at job start Mon Mar 30 2020 04:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.46072 * 2 1 4 4 C 1.53038 * 109.46281 * 119.97476 * 2 1 3 5 5 C 1.53127 * 109.27941 * 179.18690 * 4 2 1 6 6 H 1.08998 * 109.57452 * 62.28001 * 5 4 2 7 7 N 1.46494 * 109.52288 * 182.44335 * 5 4 2 8 8 S 1.65602 * 119.99686 * 214.68294 * 7 5 4 9 9 O 1.42108 * 106.40053 * 178.53822 * 8 7 5 10 10 O 1.42099 * 106.40433 * 311.45690 * 8 7 5 11 11 C 1.76202 * 107.21919 * 65.00256 * 8 7 5 12 12 H 1.07999 * 119.99579 * 359.97438 * 11 8 7 13 13 C 1.37875 * 120.00012 * 179.97438 * 11 8 7 14 14 N 1.31517 * 119.99980 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 120.00025 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47097 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47183 * 120.00315 * 15 13 11 18 18 H 1.48505 * 109.47033 * 240.00234 * 15 13 11 19 19 C 1.53117 * 109.15989 * 302.34585 * 5 4 2 20 20 C 1.53044 * 109.27792 * 57.65607 * 19 5 4 21 21 N 1.46830 * 109.46156 * 240.02046 * 2 1 3 22 22 C 1.46901 * 110.98168 * 54.14453 * 21 2 1 23 23 H 1.08996 * 109.47580 * 300.02377 * 1 2 3 24 24 H 1.09001 * 109.46948 * 60.02806 * 1 2 3 25 25 H 1.09005 * 109.47020 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.50308 * 59.24904 * 4 2 1 27 27 H 1.09000 * 109.50697 * 299.12630 * 4 2 1 28 28 H 0.97001 * 120.00399 * 34.68207 * 7 5 4 29 29 H 0.96998 * 119.99971 * 179.97438 * 14 13 11 30 30 H 1.09001 * 109.50874 * 297.71787 * 19 5 4 31 31 H 1.09002 * 109.53469 * 177.60908 * 19 5 4 32 32 H 1.09002 * 109.46396 * 60.83566 * 20 19 5 33 33 H 1.08994 * 109.46485 * 180.81491 * 20 19 5 34 34 H 1.09001 * 109.46924 * 180.26109 * 22 21 2 35 35 H 1.09000 * 109.46915 * 300.26098 * 22 21 2 36 36 H 1.08999 * 109.47074 * 60.26281 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5709 -0.7363 1.2355 6 1 3.9467 0.2864 1.2676 7 7 4.0641 -1.4759 2.3999 8 16 5.4643 -1.0044 3.1479 9 8 5.6499 -1.8877 4.2455 10 8 6.4292 -0.8290 2.1197 11 6 5.1757 0.5914 3.8370 12 1 4.2119 1.0643 3.7188 13 6 6.1801 1.2363 4.5271 14 7 7.3538 0.6606 4.6705 15 14 5.8744 2.9284 5.2569 16 1 4.4831 3.3525 4.9576 17 1 6.0696 2.8756 6.7281 18 1 6.8272 3.9020 4.6658 19 6 4.0546 -1.4191 -0.0468 20 6 3.4863 -0.6779 -1.2592 21 7 2.0191 -0.6918 -1.1992 22 6 1.4369 -0.1104 -2.4161 23 1 -0.3634 0.5142 0.8897 24 1 -0.3633 0.5134 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 1.6658 -1.7447 1.2576 27 1 1.6896 -0.1982 2.1400 28 1 3.5706 -2.2418 2.7327 29 1 8.0606 1.1144 5.1557 30 1 3.7121 -2.4538 -0.0597 31 1 5.1437 -1.3956 -0.0838 32 1 3.8403 0.3531 -1.2534 33 1 3.8170 -1.1702 -2.1737 34 1 1.8122 -0.6442 -3.2893 35 1 0.3510 -0.1969 -2.3765 36 1 1.7154 0.9411 -2.4856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157977038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:21 Heat of formation + Delta-G solvation = -127.296614 kcal Electronic energy + Delta-G solvation = -18895.370822 eV Core-core repulsion = 15925.099623 eV Total energy + Delta-G solvation = -2970.271199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.37099 -37.40289 -36.43277 -36.11730 -35.18083 -33.32143 -31.86174 -28.28569 -27.94959 -26.72278 -23.80485 -22.24524 -21.30993 -20.54826 -19.23597 -18.23316 -17.36324 -16.84199 -16.47136 -16.23780 -15.91707 -15.46475 -15.28716 -15.12398 -14.41105 -14.01695 -13.67040 -13.33619 -13.09766 -13.03873 -12.95493 -12.83062 -12.68189 -12.56689 -12.49692 -12.38996 -12.29510 -12.00134 -11.82263 -11.74600 -11.27856 -11.22138 -10.91531 -10.15808 -9.24044 -8.76527 -7.49094 0.37238 1.31867 1.32861 1.50340 2.19652 2.56917 2.95468 2.99868 3.67193 3.80061 3.93517 3.98311 4.14811 4.32343 4.38933 4.49232 4.54783 4.58543 4.65362 4.72106 4.84461 4.90550 4.97003 4.98441 5.03959 5.13341 5.21478 5.25502 5.30618 5.41945 5.50725 5.89288 6.15583 6.21863 6.42633 6.77384 8.20301 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025479 B = 0.006459 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.685572 B = 4333.952162 C = 4799.124816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 H 0.035 0.965 4 C -0.110 4.110 5 C 0.152 3.848 6 H 0.064 0.936 7 N -1.115 6.115 8 S 2.719 3.281 9 O -1.048 7.048 10 O -1.040 7.040 11 C -1.039 5.039 12 H 0.119 0.881 13 C 0.069 3.931 14 N -0.894 5.894 15 Si 0.989 3.011 16 H -0.246 1.246 17 H -0.259 1.259 18 H -0.259 1.259 19 C -0.134 4.134 20 C 0.062 3.938 21 N -0.544 5.544 22 C 0.020 3.980 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.415 0.585 29 H 0.299 0.701 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.029 0.971 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.407 1.582 -10.781 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 H 0.053 0.947 4 C -0.149 4.149 5 C 0.044 3.956 6 H 0.083 0.917 7 N -0.873 5.873 8 S 2.820 3.180 9 O -1.038 7.038 10 O -1.029 7.029 11 C -1.172 5.172 12 H 0.137 0.863 13 C -0.144 4.144 14 N -0.526 5.526 15 Si 0.807 3.193 16 H -0.169 1.169 17 H -0.183 1.183 18 H -0.183 1.183 19 C -0.174 4.174 20 C -0.066 4.066 21 N -0.269 5.269 22 C -0.127 4.127 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.249 0.751 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -13.464 0.690 -10.736 17.234 hybrid contribution 0.301 1.502 0.750 1.706 sum -13.164 2.192 -9.986 16.667 Atomic orbital electron populations 1.21861 0.92070 1.03028 1.02724 1.21664 0.96991 0.94895 0.89512 0.94658 1.21938 0.92177 1.02820 0.97997 1.20839 0.95991 0.94364 0.84377 0.91737 1.55444 1.45501 1.43440 1.42919 0.99913 0.71157 0.75255 0.71688 1.93307 1.85636 1.69254 1.55648 1.93304 1.60689 1.88425 1.60529 1.30928 1.08245 1.27552 1.50506 0.86280 1.26026 0.92392 1.04207 0.91767 1.70000 1.04590 1.41203 1.36783 0.85114 0.80375 0.75204 0.78564 1.16901 1.18334 1.18350 1.22115 1.00210 1.01055 0.94035 1.22018 0.87578 0.98666 0.98382 1.62006 1.06607 1.55349 1.02966 1.22498 1.01332 0.97220 0.91660 0.91383 0.91168 0.91484 0.89653 0.90317 0.75143 0.89129 0.90159 0.92540 0.95313 0.88971 0.90650 0.89536 0.95781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.77 71.98 0.63 -1.70 16 2 C 0.08 1.78 2.44 44.94 0.11 1.89 16 3 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 4 C -0.11 -2.89 4.90 30.65 0.15 -2.74 16 5 C 0.15 5.24 2.72 45.07 0.12 5.36 16 6 H 0.06 2.47 7.85 -2.39 -0.02 2.45 16 7 N -1.12 -44.49 5.48 -169.06 -0.93 -45.42 16 8 S 2.72 147.72 4.93 -56.49 -0.28 147.44 16 9 O -1.05 -63.78 18.02 -128.00 -2.31 -66.09 16 10 O -1.04 -62.31 17.33 -128.00 -2.22 -64.53 16 11 C -1.04 -57.40 9.58 67.73 0.65 -56.75 16 12 H 0.12 5.92 7.81 -2.91 -0.02 5.90 16 13 C 0.07 3.85 5.46 84.65 0.46 4.31 16 14 N -0.89 -53.85 13.19 21.45 0.28 -53.57 16 15 Si 0.99 41.36 29.54 68.60 2.03 43.39 16 16 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 17 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 18 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 19 C -0.13 -4.31 5.70 30.65 0.17 -4.13 16 20 C 0.06 1.61 5.47 86.33 0.47 2.08 16 21 N -0.54 -12.22 4.75 -897.21 -4.26 -16.48 16 22 C 0.02 0.34 9.06 127.69 1.16 1.50 16 23 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 0.98 6.32 -2.39 -0.02 0.97 16 25 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.41 14.21 8.84 -96.74 -0.85 13.35 16 29 H 0.30 16.08 8.31 -92.71 -0.77 15.31 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.06 2.12 7.69 -2.39 -0.02 2.10 16 32 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 2.06 8.09 -2.39 -0.02 2.04 16 34 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 35 H 0.09 1.20 6.19 -2.39 -0.01 1.18 16 36 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -74.89 302.99 -3.54 -78.43 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.21 Total: 27.02 kcal Atomic # 6 Polarization: -54.12 SS G_CDS: 3.93 Total: -50.19 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.90 Total: -115.47 kcal Atomic # 8 Polarization: -126.09 SS G_CDS: -4.52 Total: -130.62 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 147.72 SS G_CDS: -0.28 Total: 147.44 kcal Total: -74.89 -3.54 -78.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157977038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.866 kcal (2) G-P(sol) polarization free energy of solvation -74.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds