Wall clock time and date at job start Mon Mar 30 2020 05:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46944 * 2 1 4 4 C 1.52997 * 109.47102 * 120.00380 * 2 1 3 5 5 N 1.46504 * 109.47180 * 174.99976 * 4 2 1 6 6 S 1.65597 * 119.99963 * 164.99738 * 5 4 2 7 7 O 1.42102 * 106.40026 * 178.53812 * 6 5 4 8 8 O 1.42093 * 106.40569 * 311.46027 * 6 5 4 9 9 C 1.76197 * 107.21726 * 65.00349 * 6 5 4 10 10 H 1.08002 * 120.00334 * 359.97438 * 9 6 5 11 11 C 1.37882 * 120.00123 * 179.97438 * 9 6 5 12 12 N 1.31517 * 119.99852 * 0.02562 * 11 9 6 13 13 Si 1.86791 * 120.00078 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.47618 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47163 * 120.00222 * 13 11 9 16 16 H 1.48503 * 109.47637 * 240.00272 * 13 11 9 17 17 N 1.46905 * 109.47164 * 240.00359 * 2 1 3 18 18 C 1.47843 * 110.99682 * 301.18927 * 17 2 1 19 19 C 1.54910 * 104.79468 * 146.36593 * 18 17 2 20 20 C 1.55138 * 101.64831 * 322.92537 * 19 18 17 21 21 C 1.47443 * 110.99508 * 62.02889 * 17 2 1 22 22 H 1.09001 * 109.47081 * 306.91830 * 1 2 3 23 23 H 1.08999 * 109.47619 * 66.91834 * 1 2 3 24 24 H 1.08999 * 109.47057 * 186.91707 * 1 2 3 25 25 H 1.09002 * 109.47126 * 295.00165 * 4 2 1 26 26 H 1.09004 * 109.47186 * 55.00138 * 4 2 1 27 27 H 0.96998 * 119.99877 * 345.00303 * 5 4 2 28 28 H 0.96999 * 119.99623 * 179.97438 * 12 11 9 29 29 H 1.08999 * 110.37898 * 27.52823 * 18 17 2 30 30 H 1.09005 * 110.36635 * 265.18845 * 18 17 2 31 31 H 1.09002 * 110.98604 * 204.83376 * 19 18 17 32 32 H 1.08995 * 110.99045 * 81.01509 * 19 18 17 33 33 H 1.09001 * 110.70353 * 154.04526 * 20 19 18 34 34 H 1.09005 * 110.70637 * 277.26680 * 20 19 18 35 35 H 1.08999 * 109.88799 * 117.34182 * 21 17 2 36 36 H 1.08992 * 109.89562 * 356.14849 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 16 4.3574 -1.2178 2.5522 7 8 5.7233 -1.2733 2.1641 8 8 3.8771 -0.3699 3.5863 9 6 3.9009 -2.8590 3.0021 10 1 3.1787 -3.4005 2.4092 11 6 4.4657 -3.4521 4.1113 12 7 5.3449 -2.7926 4.8337 13 14 3.9813 -5.1918 4.5888 14 1 2.9815 -5.7106 3.6211 15 1 5.1840 -6.0629 4.5719 16 1 3.3938 -5.1855 5.9526 17 7 2.0197 -0.6924 -1.1995 18 6 1.5223 -2.0839 -1.2481 19 6 1.3264 -2.3815 -2.7557 20 6 0.8063 -1.0169 -3.2793 21 6 1.5870 0.0039 -2.4251 22 1 -0.3633 0.6173 0.8216 23 1 -0.3634 0.4029 -0.9454 24 1 -0.3633 -1.0202 0.1238 25 1 1.7516 -0.1584 2.1369 26 1 1.6053 -1.7199 1.2950 27 1 3.9645 -0.6668 0.3541 28 1 5.7419 -3.2098 5.6143 29 1 0.5733 -2.1664 -0.7184 30 1 2.2577 -2.7648 -0.8193 31 1 0.5844 -3.1658 -2.9055 32 1 2.2727 -2.6459 -3.2276 33 1 1.0417 -0.8949 -4.3366 34 1 -0.2661 -0.9221 -3.1089 35 1 2.4575 0.3598 -2.9762 36 1 0.9407 0.8425 -2.1666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161144958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:38 Heat of formation + Delta-G solvation = -91.345137 kcal Electronic energy + Delta-G solvation = -18800.906405 eV Core-core repulsion = 15832.194179 eV Total energy + Delta-G solvation = -2968.712226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.54280 -35.30124 -34.91112 -33.82962 -33.02704 -32.01189 -28.97888 -28.84445 -26.05531 -25.20445 -22.41703 -21.11365 -19.49508 -18.78592 -17.24514 -16.51274 -16.00851 -15.71500 -15.34842 -14.78472 -14.21244 -13.95152 -13.86576 -13.26293 -12.98093 -12.68475 -12.44782 -12.26664 -11.94522 -11.85843 -11.27087 -11.25334 -11.19722 -11.08180 -10.98996 -10.82914 -10.60432 -10.54625 -10.17721 -10.08124 -10.04987 -9.19856 -8.87913 -8.32428 -8.16636 -6.63407 -5.23969 2.49073 3.08729 3.17131 3.24103 4.01359 4.12935 4.58877 4.67894 4.70656 4.82998 4.96131 5.01232 5.23956 5.32503 5.39205 5.45981 5.57266 5.69970 5.72126 5.75662 5.83780 5.92591 5.94851 6.07304 6.13844 6.16302 6.23885 6.38469 6.63961 7.00264 7.08388 7.21837 7.39452 8.03624 8.21470 8.96061 10.30618 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026188 B = 0.006181 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.950963 B = 4529.232065 C = 4963.004191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.066 3.934 3 H 0.088 0.912 4 C 0.138 3.862 5 N -1.128 6.128 6 S 2.717 3.283 7 O -1.009 7.009 8 O -1.012 7.012 9 C -1.019 5.019 10 H 0.101 0.899 11 C 0.132 3.868 12 N -0.846 5.846 13 Si 0.919 3.081 14 H -0.263 1.263 15 H -0.272 1.272 16 H -0.272 1.272 17 N -0.519 5.519 18 C 0.033 3.967 19 C -0.130 4.130 20 C -0.141 4.141 21 C 0.039 3.961 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.410 0.590 28 H 0.289 0.711 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.040 1.972 -13.056 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.044 4.044 3 H 0.107 0.893 4 C 0.010 3.990 5 N -0.884 5.884 6 S 2.817 3.183 7 O -0.999 6.999 8 O -1.002 7.002 9 C -1.152 5.152 10 H 0.119 0.881 11 C -0.085 4.085 12 N -0.476 5.476 13 Si 0.743 3.257 14 H -0.187 1.187 15 H -0.197 1.197 16 H -0.197 1.197 17 N -0.243 5.243 18 C -0.094 4.094 19 C -0.168 4.168 20 C -0.179 4.179 21 C -0.089 4.089 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.242 0.758 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.846 2.566 -12.255 15.929 hybrid contribution -1.307 -1.409 -0.179 1.930 sum -11.154 1.157 -12.433 16.743 Atomic orbital electron populations 1.22471 0.97192 1.02646 1.02281 1.22129 0.92631 0.98887 0.90708 0.89347 1.21044 0.81751 0.99606 0.96604 1.55746 1.14471 1.89010 1.29221 1.00275 0.71800 0.75854 0.70414 1.93367 1.34578 1.89291 1.82702 1.93343 1.81714 1.69526 1.55628 1.30620 1.38091 1.24837 1.21660 0.88079 1.24744 0.90985 0.99735 0.93069 1.69915 1.23462 1.38465 1.15776 0.86164 0.79225 0.81474 0.78841 1.18702 1.19679 1.19705 1.63699 1.57360 1.01991 1.01218 1.23177 0.99773 0.90478 0.95970 1.22708 1.01413 0.96731 0.95931 1.22773 0.99609 0.95623 0.99934 1.22835 0.98498 0.96428 0.91126 0.91574 0.92323 0.91892 0.90565 0.92631 0.75795 0.90058 0.92791 0.89527 0.91212 0.90701 0.91141 0.91834 0.90659 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 8.55 37.16 0.32 -1.70 16 2 C 0.07 0.89 2.45 -67.71 -0.17 0.72 16 3 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.14 2.37 5.41 -4.04 -0.02 2.34 16 5 N -1.13 -23.05 5.91 -10.61 -0.06 -23.11 16 6 S 2.72 73.35 5.02 -107.50 -0.54 72.81 16 7 O -1.01 -30.34 18.02 -57.17 -1.03 -31.37 16 8 O -1.01 -30.01 17.49 -57.17 -1.00 -31.01 16 9 C -1.02 -28.32 9.72 30.60 0.30 -28.02 16 10 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 11 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 12 N -0.85 -25.29 13.19 55.43 0.73 -24.56 16 13 Si 0.92 20.81 29.54 -169.99 -5.02 15.79 16 14 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 N -0.52 -6.73 4.45 -223.29 -0.99 -7.72 16 18 C 0.03 0.41 5.28 -2.30 -0.01 0.40 16 19 C -0.13 -1.31 7.08 -24.59 -0.17 -1.48 16 20 C -0.14 -1.27 6.94 -24.91 -0.17 -1.44 16 21 C 0.04 0.41 6.25 -2.84 -0.02 0.39 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.56 6.29 -51.93 -0.33 0.23 16 24 H 0.06 0.68 6.24 -51.93 -0.32 0.35 16 25 H 0.08 1.35 7.75 -51.93 -0.40 0.95 16 26 H 0.06 0.93 7.33 -51.93 -0.38 0.55 16 27 H 0.41 7.75 8.09 -34.47 -0.28 7.47 16 28 H 0.29 7.74 8.31 -40.82 -0.34 7.40 16 29 H 0.05 0.64 5.46 -51.93 -0.28 0.36 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.54 6.18 -51.93 -0.32 0.22 16 LS Contribution 300.69 15.07 4.53 4.53 Total: -1.00 -34.84 300.69 -8.68 -43.52 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.24 Total: 6.26 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.33 Total: -55.40 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: -2.03 Total: -62.38 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 73.35 SS G_CDS: -0.54 Total: 72.81 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.84 -8.68 -43.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161144958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.828 kcal (2) G-P(sol) polarization free energy of solvation -34.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds