Wall clock time and date at job start Mon Mar 30 2020 05:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46944 * 2 1 4 4 C 1.52997 * 109.47102 * 120.00380 * 2 1 3 5 5 N 1.46504 * 109.47180 * 174.99976 * 4 2 1 6 6 S 1.65597 * 119.99963 * 164.99738 * 5 4 2 7 7 O 1.42102 * 106.40026 * 178.53812 * 6 5 4 8 8 O 1.42093 * 106.40569 * 311.46027 * 6 5 4 9 9 C 1.76197 * 107.21726 * 65.00349 * 6 5 4 10 10 H 1.08002 * 120.00334 * 359.97438 * 9 6 5 11 11 C 1.37882 * 120.00123 * 179.97438 * 9 6 5 12 12 N 1.31517 * 119.99852 * 0.02562 * 11 9 6 13 13 Si 1.86791 * 120.00078 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.47618 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47163 * 120.00222 * 13 11 9 16 16 H 1.48503 * 109.47637 * 240.00272 * 13 11 9 17 17 N 1.46905 * 109.47164 * 240.00359 * 2 1 3 18 18 C 1.47843 * 110.99682 * 301.18927 * 17 2 1 19 19 C 1.54910 * 104.79468 * 146.36593 * 18 17 2 20 20 C 1.55138 * 101.64831 * 322.92537 * 19 18 17 21 21 C 1.47443 * 110.99508 * 62.02889 * 17 2 1 22 22 H 1.09001 * 109.47081 * 306.91830 * 1 2 3 23 23 H 1.08999 * 109.47619 * 66.91834 * 1 2 3 24 24 H 1.08999 * 109.47057 * 186.91707 * 1 2 3 25 25 H 1.09002 * 109.47126 * 295.00165 * 4 2 1 26 26 H 1.09004 * 109.47186 * 55.00138 * 4 2 1 27 27 H 0.96998 * 119.99877 * 345.00303 * 5 4 2 28 28 H 0.96999 * 119.99623 * 179.97438 * 12 11 9 29 29 H 1.08999 * 110.37898 * 27.52823 * 18 17 2 30 30 H 1.09005 * 110.36635 * 265.18845 * 18 17 2 31 31 H 1.09002 * 110.98604 * 204.83376 * 19 18 17 32 32 H 1.08995 * 110.99045 * 81.01509 * 19 18 17 33 33 H 1.09001 * 110.70353 * 154.04526 * 20 19 18 34 34 H 1.09005 * 110.70637 * 277.26680 * 20 19 18 35 35 H 1.08999 * 109.88799 * 117.34182 * 21 17 2 36 36 H 1.08992 * 109.89562 * 356.14849 * 21 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 16 4.3574 -1.2178 2.5522 7 8 5.7233 -1.2733 2.1641 8 8 3.8771 -0.3699 3.5863 9 6 3.9009 -2.8590 3.0021 10 1 3.1787 -3.4005 2.4092 11 6 4.4657 -3.4521 4.1113 12 7 5.3449 -2.7926 4.8337 13 14 3.9813 -5.1918 4.5888 14 1 2.9815 -5.7106 3.6211 15 1 5.1840 -6.0629 4.5719 16 1 3.3938 -5.1855 5.9526 17 7 2.0197 -0.6924 -1.1995 18 6 1.5223 -2.0839 -1.2481 19 6 1.3264 -2.3815 -2.7557 20 6 0.8063 -1.0169 -3.2793 21 6 1.5870 0.0039 -2.4251 22 1 -0.3633 0.6173 0.8216 23 1 -0.3634 0.4029 -0.9454 24 1 -0.3633 -1.0202 0.1238 25 1 1.7516 -0.1584 2.1369 26 1 1.6053 -1.7199 1.2950 27 1 3.9645 -0.6668 0.3541 28 1 5.7419 -3.2098 5.6143 29 1 0.5733 -2.1664 -0.7184 30 1 2.2577 -2.7648 -0.8193 31 1 0.5844 -3.1658 -2.9055 32 1 2.2727 -2.6459 -3.2276 33 1 1.0417 -0.8949 -4.3366 34 1 -0.2661 -0.9221 -3.1089 35 1 2.4575 0.3598 -2.9762 36 1 0.9407 0.8425 -2.1666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161144958.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:38 Heat of formation + Delta-G solvation = -120.050908 kcal Electronic energy + Delta-G solvation = -18802.151181 eV Core-core repulsion = 15832.194179 eV Total energy + Delta-G solvation = -2969.957002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50249 -37.37989 -36.37912 -36.09916 -35.15745 -33.29270 -29.88593 -29.71428 -28.23802 -26.48802 -23.45096 -21.89767 -21.01235 -20.41658 -19.24457 -18.14380 -17.52961 -17.01031 -16.74346 -16.50293 -15.87971 -15.53487 -15.04412 -14.67790 -14.22501 -14.03405 -13.86947 -13.50144 -13.23975 -13.14874 -13.01657 -12.70329 -12.51404 -12.47552 -12.37271 -12.27474 -12.06648 -11.94540 -11.90777 -11.59383 -11.38341 -11.25145 -10.96006 -10.08183 -9.11956 -8.73398 -7.45721 0.42919 1.33834 1.34639 1.52255 2.22191 2.59629 2.96622 3.21152 3.68879 3.76816 3.85783 4.00577 4.10827 4.19310 4.35815 4.46775 4.56672 4.63586 4.69695 4.72853 4.75808 4.86675 5.00516 5.05971 5.11460 5.12724 5.17722 5.24916 5.31658 5.42031 5.46144 5.92715 6.15681 6.22933 6.54967 6.80267 8.23276 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026188 B = 0.006181 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.950963 B = 4529.232065 C = 4963.004191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.073 3.927 3 H 0.089 0.911 4 C 0.128 3.872 5 N -1.111 6.111 6 S 2.721 3.279 7 O -1.049 7.049 8 O -1.047 7.047 9 C -1.036 5.036 10 H 0.119 0.881 11 C 0.068 3.932 12 N -0.896 5.896 13 Si 0.991 3.009 14 H -0.246 1.246 15 H -0.261 1.261 16 H -0.259 1.259 17 N -0.538 5.538 18 C 0.028 3.972 19 C -0.126 4.126 20 C -0.132 4.132 21 C 0.036 3.964 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.417 0.583 28 H 0.298 0.702 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.144 0.923 -14.411 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.037 4.037 3 H 0.107 0.893 4 C 0.001 3.999 5 N -0.872 5.872 6 S 2.821 3.179 7 O -1.039 7.039 8 O -1.037 7.037 9 C -1.170 5.170 10 H 0.137 0.863 11 C -0.145 4.145 12 N -0.527 5.527 13 Si 0.810 3.190 14 H -0.169 1.169 15 H -0.185 1.185 16 H -0.183 1.183 17 N -0.263 5.263 18 C -0.099 4.099 19 C -0.164 4.164 20 C -0.170 4.170 21 C -0.091 4.091 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.252 0.748 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.949 1.545 -13.631 18.193 hybrid contribution -0.655 -1.017 0.188 1.224 sum -12.605 0.529 -13.444 18.436 Atomic orbital electron populations 1.22405 0.94743 1.03092 1.03605 1.22011 0.94412 0.98144 0.89135 0.89291 1.21342 0.79386 1.00491 0.98639 1.55142 1.15928 1.88543 1.27567 0.99799 0.71290 0.75822 0.70946 1.93301 1.37445 1.89688 1.83482 1.93290 1.82076 1.70442 1.57867 1.30914 1.38556 1.25207 1.22302 0.86292 1.26045 0.90560 1.05049 0.92821 1.70008 1.24941 1.40976 1.16796 0.85087 0.79635 0.75006 0.79315 1.16932 1.18507 1.18289 1.63616 1.58292 1.02468 1.01918 1.23178 0.99192 0.89833 0.97736 1.22688 1.01684 0.97990 0.94058 1.22741 0.99950 0.93991 1.00340 1.22897 0.98966 0.97021 0.90206 0.91015 0.90387 0.91718 0.91506 0.92113 0.74776 0.89177 0.92091 0.92135 0.89742 0.91365 0.89735 0.90637 0.90878 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.41 8.55 71.98 0.62 -2.80 16 2 C 0.07 1.86 2.45 44.91 0.11 1.97 16 3 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.13 4.37 5.41 86.38 0.47 4.83 16 5 N -1.11 -45.98 5.91 -187.48 -1.11 -47.09 16 6 S 2.72 150.67 5.02 -56.49 -0.28 150.38 16 7 O -1.05 -65.14 18.02 -128.00 -2.31 -67.45 16 8 O -1.05 -64.00 17.49 -128.00 -2.24 -66.24 16 9 C -1.04 -57.91 9.72 67.74 0.66 -57.25 16 10 H 0.12 5.99 7.81 -2.91 -0.02 5.96 16 11 C 0.07 3.82 5.46 84.66 0.46 4.28 16 12 N -0.90 -54.45 13.19 21.45 0.28 -54.17 16 13 Si 0.99 41.76 29.54 68.60 2.03 43.79 16 14 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 15 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 16 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 17 N -0.54 -13.17 4.45 -860.37 -3.83 -17.00 16 18 C 0.03 0.66 5.28 86.77 0.46 1.11 16 19 C -0.13 -2.26 7.08 31.98 0.23 -2.03 16 20 C -0.13 -1.95 6.94 31.77 0.22 -1.73 16 21 C 0.04 0.67 6.25 86.65 0.54 1.21 16 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.08 1.21 6.29 -2.39 -0.02 1.19 16 24 H 0.06 1.22 6.24 -2.39 -0.01 1.21 16 25 H 0.07 2.39 7.75 -2.39 -0.02 2.37 16 26 H 0.06 1.99 7.33 -2.38 -0.02 1.98 16 27 H 0.42 16.00 8.09 -96.75 -0.78 15.21 16 28 H 0.30 16.21 8.31 -92.71 -0.77 15.44 16 29 H 0.06 1.32 5.46 -2.39 -0.01 1.31 16 30 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.10 6.18 -2.39 -0.01 1.09 16 Total: -1.00 -76.13 300.69 -3.40 -79.53 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.30 Total: 28.64 kcal Atomic # 6 Polarization: -54.16 SS G_CDS: 3.76 Total: -50.40 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -4.66 Total: -118.26 kcal Atomic # 8 Polarization: -129.14 SS G_CDS: -4.54 Total: -133.68 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 150.67 SS G_CDS: -0.28 Total: 150.38 kcal Total: -76.13 -3.40 -79.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161144958.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.521 kcal (2) G-P(sol) polarization free energy of solvation -76.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds