Wall clock time and date at job start Mon Mar 30 2020 04:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.44384 * 2 1 4 4 C 1.53037 * 109.46000 * 119.96736 * 2 1 3 5 5 C 1.53196 * 109.31040 * 181.38842 * 4 2 1 6 6 N 1.46922 * 108.77606 * 305.36550 * 5 4 2 7 7 S 1.65602 * 120.62914 * 233.58926 * 6 5 4 8 8 O 1.42100 * 106.40075 * 203.53866 * 7 6 5 9 9 O 1.42099 * 106.40202 * 336.45750 * 7 6 5 10 10 C 1.76202 * 107.21926 * 90.00048 * 7 6 5 11 11 H 1.08007 * 119.99839 * 359.97438 * 10 7 6 12 12 C 1.37872 * 120.00124 * 180.02562 * 10 7 6 13 13 N 1.31513 * 120.00037 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00117 * 179.97438 * 12 10 7 15 15 H 1.48496 * 109.47472 * 59.99792 * 14 12 10 16 16 H 1.48501 * 109.47013 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47015 * 299.99721 * 14 12 10 18 18 C 1.46931 * 118.74046 * 53.60492 * 6 5 4 19 19 C 1.53039 * 109.45798 * 240.03786 * 2 1 3 20 20 H 1.08993 * 109.52527 * 298.57858 * 19 2 1 21 21 C 1.52998 * 109.50028 * 58.66118 * 19 2 1 22 22 N 1.46893 * 109.47110 * 184.83437 * 21 19 2 23 23 H 1.09004 * 109.47498 * 300.03263 * 1 2 3 24 24 H 1.08996 * 109.47590 * 60.03524 * 1 2 3 25 25 H 1.09000 * 109.46833 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.50017 * 61.43249 * 4 2 1 27 27 H 1.09004 * 109.49998 * 301.33846 * 4 2 1 28 28 H 1.08999 * 109.58846 * 65.15273 * 5 4 2 29 29 H 1.09003 * 109.58174 * 185.43556 * 5 4 2 30 30 H 0.97000 * 120.00668 * 180.02562 * 13 12 10 31 31 H 1.09000 * 109.57916 * 66.17927 * 18 6 5 32 32 H 1.08992 * 109.58752 * 186.46132 * 18 6 5 33 33 H 1.08994 * 109.47310 * 304.84072 * 21 19 2 34 34 H 1.09004 * 109.47087 * 64.83861 * 21 19 2 35 35 H 1.00904 * 111.00137 * 180.02562 * 22 21 19 36 36 H 1.00903 * 111.00176 * 303.95335 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2486 -0.0001 7 16 5.1667 -2.4876 -0.0001 8 8 5.8401 -2.4267 -1.2499 9 8 5.8404 -2.4265 1.2495 10 6 4.2536 -3.9946 0.0001 11 1 3.1737 -3.9717 0.0007 12 6 4.9174 -5.2029 0.0007 13 7 6.2323 -5.2308 0.0006 14 14 3.9494 -6.8005 0.0017 15 1 3.0940 -6.8618 -1.2106 16 1 4.8903 -7.9494 0.0015 17 1 3.0944 -6.8604 1.2143 18 6 3.5713 -0.6884 -1.2643 19 6 2.0398 -0.7207 -1.2501 20 1 1.6978 -1.7555 -1.2390 21 6 1.5027 -0.0188 -2.4990 22 7 1.8960 -0.7769 -3.6941 23 1 -0.3634 0.5143 0.8897 24 1 -0.3634 0.5132 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 1.6978 -1.7556 1.2383 27 1 1.6572 -0.2208 2.1399 28 1 3.9143 0.3410 1.3673 29 1 3.9416 -1.2824 2.0999 30 1 6.6995 -6.0809 0.0006 31 1 3.9142 0.3411 -1.3673 32 1 3.9437 -1.2827 -2.0986 33 1 0.4155 0.0367 -2.4454 34 1 1.9155 0.9885 -2.5556 35 1 1.5533 -0.3331 -4.5330 36 1 2.8971 -0.8977 -3.7325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167646193.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:45 Heat of formation + Delta-G solvation = -135.383224 kcal Electronic energy + Delta-G solvation = -19283.050835 eV Core-core repulsion = 16312.428974 eV Total energy + Delta-G solvation = -2970.621861 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.10252 -37.48488 -36.15345 -35.85984 -35.17819 -34.28840 -31.33545 -28.48760 -28.25139 -26.10021 -23.53274 -22.47879 -21.11487 -20.27960 -19.24946 -18.29658 -17.11105 -16.93409 -16.47219 -16.02004 -15.82043 -15.27203 -15.23129 -14.72214 -14.55654 -14.24000 -13.99454 -13.94736 -13.36144 -13.02128 -12.88007 -12.75745 -12.67307 -12.49721 -12.35237 -12.33846 -12.22352 -12.00999 -11.65125 -11.24819 -11.14038 -11.12543 -10.87959 -9.72848 -9.51269 -8.74501 -7.47790 0.30969 1.31421 1.34002 1.46680 2.19429 2.57109 2.82483 3.62664 3.75773 3.83919 3.88168 4.00314 4.09218 4.34211 4.37269 4.48591 4.57490 4.60774 4.72025 4.81338 4.83529 4.88726 4.97064 5.07232 5.09141 5.24518 5.27817 5.28999 5.38904 5.54139 5.65000 5.90929 6.00940 6.30624 6.66096 6.78086 8.20343 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.007898 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.312422 B = 3544.253070 C = 3721.374689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.114 3.886 6 N -1.007 6.007 7 S 2.718 3.282 8 O -1.041 7.041 9 O -1.042 7.042 10 C -1.036 5.036 11 H 0.113 0.887 12 C 0.071 3.929 13 N -0.895 5.895 14 Si 0.986 3.014 15 H -0.252 1.252 16 H -0.262 1.262 17 H -0.250 1.250 18 C 0.124 3.876 19 C -0.095 4.095 20 H 0.060 0.940 21 C 0.072 3.928 22 N -0.868 5.868 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.299 0.701 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.351 0.649 36 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.275 10.635 -1.703 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.097 4.097 3 H 0.103 0.897 4 C -0.164 4.164 5 C -0.010 4.010 6 N -0.845 5.845 7 S 2.821 3.179 8 O -1.031 7.031 9 O -1.032 7.032 10 C -1.169 5.169 11 H 0.132 0.868 12 C -0.142 4.142 13 N -0.527 5.527 14 Si 0.804 3.196 15 H -0.176 1.176 16 H -0.186 1.186 17 H -0.174 1.174 18 C -0.002 4.002 19 C -0.115 4.115 20 H 0.079 0.921 21 C -0.059 4.059 22 N -0.399 5.399 23 H 0.087 0.913 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.165 0.835 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.558 10.119 -1.385 16.187 hybrid contribution 0.288 -0.507 -0.269 0.642 sum -12.270 9.613 -1.654 15.675 Atomic orbital electron populations 1.21853 0.93520 1.01804 1.02752 1.21043 0.96662 0.99359 0.92622 0.89676 1.21987 0.93616 1.01301 0.99507 1.21517 0.95741 0.99486 0.84302 1.57658 1.62601 1.52166 1.12072 0.99987 0.72916 0.73640 0.71400 1.93283 1.74630 1.88321 1.46873 1.93286 1.74627 1.88349 1.46982 1.30931 1.07193 1.12428 1.66394 0.86847 1.25985 0.95586 1.05019 0.87561 1.69980 1.09445 1.31594 1.41697 0.85222 0.78815 0.74840 0.80697 1.17591 1.18587 1.17373 1.21491 0.95090 0.99016 0.84583 1.21582 0.93530 1.00578 0.95844 0.92138 1.21869 1.01222 0.94291 0.88516 1.58727 1.19269 1.56341 1.05601 0.91286 0.91191 0.93572 0.92829 0.88256 0.90072 0.91294 0.89131 0.90621 0.91396 0.89102 0.94003 0.83489 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.82 71.98 0.63 -1.85 16 2 C -0.08 -1.73 2.23 -10.77 -0.02 -1.75 16 3 H 0.08 1.63 8.14 -2.38 -0.02 1.62 16 4 C -0.13 -3.28 5.36 30.67 0.16 -3.11 16 5 C 0.11 3.86 6.37 86.36 0.55 4.41 16 6 N -1.01 -41.46 3.29 -513.06 -1.69 -43.15 16 7 S 2.72 151.06 4.97 -56.49 -0.28 150.78 16 8 O -1.04 -63.51 16.73 -128.00 -2.14 -65.65 16 9 O -1.04 -63.78 16.74 -128.00 -2.14 -65.92 16 10 C -1.04 -58.94 9.75 67.73 0.66 -58.28 16 11 H 0.11 5.93 7.81 -2.91 -0.02 5.91 16 12 C 0.07 4.07 5.46 84.65 0.46 4.53 16 13 N -0.90 -54.79 13.19 21.45 0.28 -54.51 16 14 Si 0.99 42.61 29.54 68.60 2.03 44.64 16 15 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 16 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 17 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 18 C 0.12 4.23 5.29 86.36 0.46 4.69 16 19 C -0.09 -2.60 2.09 -10.72 -0.02 -2.63 16 20 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 21 C 0.07 1.53 6.00 86.30 0.52 2.05 16 22 N -0.87 -20.37 9.62 -186.73 -1.80 -22.16 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.02 6.29 -2.39 -0.02 1.01 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.07 2.60 7.13 -2.39 -0.02 2.59 16 30 H 0.30 16.42 8.31 -92.71 -0.77 15.65 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 2.63 5.93 -2.39 -0.01 2.61 16 33 H 0.09 1.66 6.15 -2.39 -0.01 1.65 16 34 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.35 6.23 9.08 -89.69 -0.81 5.42 16 36 H 0.34 8.72 7.38 -89.69 -0.66 8.06 16 Total: -1.00 -77.02 298.13 -2.72 -79.74 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -0.38 Total: 28.17 kcal Atomic # 6 Polarization: -55.33 SS G_CDS: 3.40 Total: -51.93 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -3.20 Total: -119.82 kcal Atomic # 8 Polarization: -127.29 SS G_CDS: -4.28 Total: -131.57 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 151.06 SS G_CDS: -0.28 Total: 150.78 kcal Total: -77.02 -2.72 -79.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167646193.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.644 kcal (2) G-P(sol) polarization free energy of solvation -77.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds