Wall clock time and date at job start Mon Mar 30 2020 05:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47847 * 2 1 4 4 N 1.46509 * 109.46798 * 239.99977 * 2 1 3 5 5 C 1.36941 * 119.99651 * 85.00244 * 4 2 1 6 6 H 1.07999 * 120.00344 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99788 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00290 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99893 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47057 * 90.00175 * 9 7 5 11 11 H 1.48500 * 109.47193 * 210.00395 * 9 7 5 12 12 H 1.48500 * 109.47270 * 330.00609 * 9 7 5 13 13 C 1.50699 * 109.47235 * 120.00636 * 2 1 3 14 14 C 1.38274 * 119.90350 * 79.99607 * 13 2 1 15 15 C 1.38314 * 120.25887 * 179.97438 * 14 13 2 16 16 C 1.38390 * 119.87737 * 0.02562 * 15 14 13 17 17 C 1.39395 * 119.86553 * 0.02878 * 16 15 14 18 18 C 1.38295 * 119.89846 * 260.27316 * 13 2 1 19 19 N 1.40213 * 119.27417 * 179.97438 * 17 16 15 20 20 C 1.35089 * 118.98614 * 15.46607 * 19 17 16 21 21 O 1.21290 * 120.13871 * 181.64991 * 20 19 17 22 22 C 1.50759 * 119.73147 * 1.67275 * 20 19 17 23 23 O 1.35980 * 120.66856 * 180.02562 * 16 15 14 24 24 H 1.08995 * 109.46709 * 299.99886 * 1 2 3 25 25 H 1.09001 * 109.46966 * 59.99884 * 1 2 3 26 26 H 1.09001 * 109.47204 * 179.97438 * 1 2 3 27 27 H 0.96994 * 120.00247 * 265.00265 * 4 2 1 28 28 H 0.96993 * 120.00416 * 179.97438 * 8 7 5 29 29 H 1.08001 * 119.86983 * 359.96651 * 14 13 2 30 30 H 1.08007 * 120.06363 * 180.02562 * 15 14 13 31 31 H 1.08005 * 120.09033 * 359.77473 * 18 13 2 32 32 H 0.97001 * 120.50804 * 195.45756 * 19 17 16 33 33 H 1.09003 * 109.44536 * 208.64225 * 22 20 19 34 34 H 1.08993 * 109.41996 * 88.71853 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1963 5 6 2.1490 -0.0074 -2.3758 6 1 1.8918 1.0403 -2.4244 7 6 2.6122 -0.6617 -3.5091 8 7 2.9251 -1.9387 -3.4502 9 14 2.7899 0.2701 -5.1184 10 1 4.1517 0.8561 -5.2033 11 1 2.5800 -0.6615 -6.2556 12 1 1.7792 1.3566 -5.1755 13 6 2.0323 -0.7105 1.2304 14 6 2.0658 -2.0925 1.2630 15 6 2.5260 -2.7522 2.3882 16 6 2.9541 -2.0264 3.4860 17 6 2.9193 -0.6333 3.4536 18 6 2.4531 0.0215 2.3256 19 7 3.3555 0.0897 4.5730 20 6 4.0829 -0.5439 5.5187 21 8 4.4456 0.0536 6.5099 22 6 4.4426 -1.9966 5.3368 23 8 3.4100 -2.6584 4.6003 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.2489 -1.6318 -1.1528 28 1 3.2484 -2.3960 -4.2421 29 1 1.7312 -2.6590 0.4065 30 1 2.5511 -3.8317 2.4101 31 1 2.4254 1.1008 2.2986 32 1 3.1384 1.0304 4.6669 33 1 4.5508 -2.4686 6.3133 34 1 5.3833 -2.0714 4.7913 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179834006.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:21 Heat of formation + Delta-G solvation = -52.562942 kcal Electronic energy + Delta-G solvation = -19114.872960 eV Core-core repulsion = 16012.398505 eV Total energy + Delta-G solvation = -3102.474455 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.44248 -40.14935 -38.98372 -37.05220 -35.90521 -33.97032 -31.55267 -30.71093 -29.88489 -28.47074 -25.99847 -24.85609 -23.84384 -22.40831 -20.35326 -19.94341 -19.17289 -18.75540 -17.91448 -17.14966 -16.71181 -16.26652 -16.09183 -15.64999 -15.57085 -15.01387 -14.82570 -14.57741 -14.45146 -13.86414 -13.69536 -13.53683 -13.18221 -12.78640 -12.55647 -12.41859 -12.22463 -12.13576 -11.72623 -11.68920 -11.62024 -11.17437 -10.95426 -9.61065 -9.00774 -8.90449 -7.90438 -5.18220 0.04326 0.27722 1.20606 1.51235 1.51601 1.59849 1.70583 2.26427 2.58807 2.72532 2.93696 3.44519 3.59596 3.88263 4.02071 4.03534 4.16560 4.30668 4.35139 4.44018 4.64930 4.76208 4.81804 4.93394 5.06600 5.16392 5.22554 5.41823 5.52943 5.55365 5.64009 5.72298 5.77845 6.26609 6.32085 6.67382 7.39114 8.13395 8.37308 9.33019 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.033572 B = 0.004334 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.828997 B = 6459.016876 C = 6569.393276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.204 3.796 3 H 0.058 0.942 4 N -0.734 5.734 5 C -0.237 4.237 6 H 0.078 0.922 7 C -0.073 4.073 8 N -0.968 5.968 9 Si 0.968 3.032 10 H -0.290 1.290 11 H -0.298 1.298 12 H -0.269 1.269 13 C -0.070 4.070 14 C -0.103 4.103 15 C -0.103 4.103 16 C 0.062 3.938 17 C 0.088 3.912 18 C -0.113 4.113 19 N -0.651 5.651 20 C 0.490 3.510 21 O -0.550 6.550 22 C 0.049 3.951 23 O -0.308 6.308 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.376 0.624 28 H 0.250 0.750 29 H 0.124 0.876 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.422 0.578 33 H 0.170 0.830 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 0.670 16.078 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 H 0.076 0.924 4 N -0.376 5.376 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.265 4.265 8 N -0.619 5.619 9 Si 0.797 3.203 10 H -0.217 1.217 11 H -0.225 1.225 12 H -0.194 1.194 13 C -0.072 4.072 14 C -0.122 4.122 15 C -0.121 4.121 16 C 0.015 3.985 17 C -0.007 4.007 18 C -0.133 4.133 19 N -0.298 5.298 20 C 0.278 3.722 21 O -0.428 6.428 22 C -0.028 4.028 23 O -0.222 6.222 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.210 0.790 28 H 0.059 0.941 29 H 0.142 0.858 30 H 0.172 0.828 31 H 0.169 0.831 32 H 0.262 0.738 33 H 0.188 0.812 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.172 0.803 16.613 16.633 hybrid contribution 0.201 0.630 -1.212 1.380 sum 0.029 1.432 15.401 15.468 Atomic orbital electron populations 1.22279 0.96586 1.01225 1.00964 1.19348 0.93081 0.94724 0.83235 0.92410 1.42706 1.78508 1.10534 1.05809 1.19620 1.34798 0.94327 0.88153 0.90454 1.25463 1.03027 0.96818 1.01192 1.69794 1.52637 1.10105 1.29364 0.85224 0.77766 0.77513 0.79767 1.21734 1.22502 1.19430 1.20062 0.98014 0.94027 0.95091 1.20906 0.99528 0.94159 0.97586 1.20628 1.00767 1.01296 0.89448 1.18607 1.02640 0.88571 0.88648 1.17914 1.03466 0.90277 0.89064 1.20573 1.01281 1.00923 0.90564 1.43681 1.51896 1.14554 1.19712 1.21986 0.76964 0.91465 0.81741 1.90787 1.53756 1.69123 1.29149 1.23449 0.91766 0.86818 1.00816 1.86244 1.53514 1.46530 1.35961 0.91191 0.93810 0.93689 0.78995 0.94120 0.85821 0.82770 0.83098 0.73782 0.81242 0.86436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.47 71.98 0.68 -4.25 16 2 C 0.20 7.44 3.09 44.24 0.14 7.58 16 3 H 0.06 2.08 7.94 -2.39 -0.02 2.06 16 4 N -0.73 -34.85 5.07 -326.49 -1.65 -36.50 16 5 C -0.24 -12.57 9.93 84.03 0.83 -11.74 16 6 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 7 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 8 N -0.97 -57.50 13.06 21.65 0.28 -57.21 16 9 Si 0.97 44.92 29.55 68.60 2.03 46.95 16 10 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 11 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 C -0.07 -2.19 4.96 -19.84 -0.10 -2.29 16 14 C -0.10 -3.16 9.04 22.30 0.20 -2.95 16 15 C -0.10 -2.69 10.00 22.32 0.22 -2.46 16 16 C 0.06 1.55 6.44 22.58 0.15 1.70 16 17 C 0.09 2.15 6.54 38.14 0.25 2.40 16 18 C -0.11 -2.89 9.57 22.35 0.21 -2.68 16 19 N -0.65 -14.01 5.47 -302.70 -1.66 -15.67 16 20 C 0.49 11.05 7.94 87.63 0.70 11.75 16 21 O -0.55 -15.44 17.95 -3.06 -0.05 -15.50 16 22 C 0.05 0.84 7.17 71.25 0.51 1.35 16 23 O -0.31 -6.83 10.46 -93.33 -0.98 -7.80 16 24 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.38 19.05 6.05 -92.71 -0.56 18.49 16 28 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.12 4.16 6.90 -2.91 -0.02 4.14 16 30 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 31 H 0.15 3.17 8.04 -2.91 -0.02 3.15 16 32 H 0.42 7.58 8.89 -92.71 -0.82 6.75 16 33 H 0.17 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -66.05 295.26 1.99 -64.06 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -0.24 Total: 26.85 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 4.26 Total: -5.17 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -3.03 Total: -109.39 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -1.03 Total: -23.30 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -66.05 1.99 -64.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179834006.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.499 kcal (2) G-P(sol) polarization free energy of solvation -66.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds