Wall clock time and date at job start Mon Mar 30 2020 04:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46784 * 2 1 4 4 H 1.08996 * 109.47234 * 54.99898 * 3 2 1 5 5 C 1.50705 * 109.47198 * 175.00179 * 3 2 1 6 6 H 1.07995 * 119.99881 * 119.99535 * 5 3 2 7 7 C 1.37872 * 119.99696 * 300.00286 * 5 3 2 8 8 N 1.31513 * 120.00322 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00123 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47095 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47552 * 119.99365 * 9 7 5 12 12 H 1.48494 * 109.47240 * 240.00101 * 9 7 5 13 13 O 1.45201 * 109.47515 * 294.99866 * 3 2 1 14 14 C 1.34881 * 116.99751 * 89.99656 * 13 3 2 15 15 O 1.21608 * 120.00145 * 0.02562 * 14 13 3 16 16 C 1.46618 * 119.99964 * 180.02562 * 14 13 3 17 17 C 1.36499 * 125.85995 * 179.97438 * 16 14 13 18 18 C 1.41218 * 107.03073 * 180.02562 * 17 16 14 19 19 C 1.43197 * 126.44909 * 180.02562 * 18 17 16 20 20 N 9.04706 * 59.41842 * 319.88233 * 2 1 3 21 21 C 1.38219 * 107.10140 * 359.76202 * 18 17 16 22 22 N 1.34396 * 108.40604 * 0.38798 * 21 18 17 23 23 C 1.46499 * 125.41125 * 179.86842 * 22 21 18 24 24 H 1.08997 * 109.47115 * 299.99742 * 1 2 3 25 25 H 1.09004 * 109.47102 * 59.99842 * 1 2 3 26 26 H 1.08999 * 109.46862 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47115 * 240.00258 * 2 1 3 28 28 H 1.08991 * 109.47603 * 119.99761 * 2 1 3 29 29 H 0.96996 * 120.00595 * 180.02562 * 8 7 5 30 30 H 1.08001 * 126.48792 * 0.03989 * 17 16 14 31 31 H 1.08003 * 125.79751 * 180.23459 * 21 18 17 32 32 H 1.09002 * 109.47391 * 269.69505 * 23 22 21 33 33 H 1.09001 * 109.46813 * 149.69561 * 23 22 21 34 34 H 1.09004 * 109.47041 * 29.69689 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3375 2.1732 9 14 6.0050 0.8802 1.3811 10 1 6.5988 1.5444 0.1930 11 1 6.4000 1.6159 2.6090 12 1 6.4962 -0.5188 1.4625 13 8 1.6559 2.0918 -1.2407 14 6 0.4669 2.7285 -1.2560 15 8 -0.2292 2.7407 -0.2589 16 6 0.0137 3.4059 -2.4748 17 6 -1.1623 4.0828 -2.6232 18 6 -1.1930 4.5731 -3.9472 19 6 -2.2415 5.3439 -4.5449 20 7 -3.0728 5.9562 -5.0187 21 6 -0.0179 4.1741 -4.5558 22 7 0.7017 3.4679 -3.6671 23 6 2.0121 2.8651 -3.9234 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 3.8293 -0.0603 2.9501 30 1 -1.9248 4.2181 -1.8705 31 1 0.2717 4.3908 -5.5734 32 1 1.8782 1.8498 -4.2968 33 1 2.5872 2.8390 -2.9979 34 1 2.5457 3.4580 -4.6663 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187923656.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:15 Heat of formation + Delta-G solvation = -17.827415 kcal Electronic energy + Delta-G solvation = -19315.719838 eV Core-core repulsion = 16214.751628 eV Total energy + Delta-G solvation = -3100.968210 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.62194 -39.29892 -36.43961 -35.91054 -33.67905 -32.97330 -31.47039 -29.83509 -27.36931 -27.02614 -23.99495 -22.78178 -22.16186 -20.17221 -19.55200 -18.49161 -16.78787 -16.32611 -15.99417 -15.86721 -15.14480 -14.91502 -14.51140 -13.86264 -13.56407 -13.46104 -13.19517 -12.96340 -12.86687 -12.47128 -12.24422 -12.05659 -11.88861 -11.52856 -11.41237 -11.24594 -11.05758 -10.73603 -10.35969 -9.99638 -9.80815 -9.49695 -8.96586 -8.89355 -8.56483 -8.43379 -6.27851 -4.36013 1.39632 1.72386 2.52967 2.78191 3.16536 3.23046 3.26648 3.41520 3.46423 3.67607 4.16790 4.26623 4.66798 4.86290 4.99209 5.04801 5.26978 5.43094 5.58956 5.84640 5.99192 6.17153 6.23654 6.36471 6.38684 6.70076 6.77659 6.87382 6.92109 7.08131 7.13181 7.50730 7.62064 7.63626 7.82245 8.04243 8.47853 8.74928 9.29713 10.78797 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031926 B = 0.004903 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.805715 B = 5709.284594 C = 6203.941847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.885 5.885 9 Si 0.910 3.090 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.357 6.357 14 C 0.523 3.477 15 O -0.499 6.499 16 C -0.020 4.020 17 C -0.064 4.064 18 C -0.143 4.143 19 C 0.299 3.701 20 N -0.447 5.447 21 C 0.085 3.915 22 N -0.400 5.400 23 C 0.056 3.944 24 H 0.054 0.946 25 H 0.032 0.968 26 H 0.033 0.967 27 H 0.041 0.959 28 H 0.109 0.891 29 H 0.267 0.733 30 H 0.160 0.840 31 H 0.184 0.816 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.696 3.024 -11.278 11.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.522 5.522 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.273 6.273 14 C 0.367 3.633 15 O -0.388 6.388 16 C -0.129 4.129 17 C -0.090 4.090 18 C -0.153 4.153 19 C -0.016 4.016 20 N -0.124 5.124 21 C -0.059 4.059 22 N -0.071 5.071 23 C -0.084 4.084 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.127 0.873 29 H 0.077 0.923 30 H 0.178 0.822 31 H 0.201 0.799 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.748 3.627 -11.470 12.340 hybrid contribution 1.223 -0.391 0.425 1.352 sum -1.525 3.236 -11.046 11.610 Atomic orbital electron populations 1.21872 0.98267 0.99158 1.00861 1.22024 0.92718 0.99213 1.03386 1.20749 0.95054 0.88769 0.78381 0.93285 1.21019 0.89438 1.39297 1.06384 0.91350 1.24877 0.99220 0.94689 0.95056 1.69888 1.35373 1.37551 1.09410 0.86243 0.83835 0.77917 0.78269 1.19533 1.20720 1.20707 1.86540 1.33458 1.62768 1.44576 1.19613 0.81273 0.76706 0.85732 1.90871 1.55582 1.58640 1.33697 1.19518 0.95907 1.10926 0.86584 1.20999 0.96117 0.96849 0.95069 1.15280 0.94103 1.10683 0.95269 1.24640 0.92205 0.91987 0.92764 1.81246 1.10506 1.11674 1.08933 1.22205 0.91206 0.96626 0.95898 1.43939 1.16444 1.37409 1.09293 1.22582 0.80720 0.99047 1.06009 0.92696 0.94903 0.94748 0.94008 0.87276 0.92316 0.82222 0.79887 0.89582 0.86396 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.56 37.16 0.32 -2.68 16 2 C -0.14 -3.13 5.49 -26.73 -0.15 -3.28 16 3 C 0.22 5.43 2.25 -27.88 -0.06 5.36 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -13.44 8.90 -34.44 -0.31 -13.75 16 6 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.65 5.29 -17.82 -0.09 1.56 16 8 N -0.88 -23.74 11.29 55.43 0.63 -23.12 16 9 Si 0.91 19.80 29.54 -169.99 -5.02 14.78 16 10 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 O -0.36 -7.40 7.15 -40.99 -0.29 -7.70 16 14 C 0.52 10.12 6.37 34.11 0.22 10.33 16 15 O -0.50 -10.92 14.05 -19.35 -0.27 -11.20 16 16 C -0.02 -0.30 6.82 -82.43 -0.56 -0.86 16 17 C -0.06 -0.87 10.54 -39.08 -0.41 -1.28 16 18 C -0.14 -1.66 5.97 -106.85 -0.64 -2.30 16 19 C 0.30 3.78 15.83 -22.47 -0.36 3.42 16 20 N -0.45 -6.51 18.54 41.84 0.78 -5.74 16 21 C 0.09 0.81 11.35 -16.44 -0.19 0.62 16 22 N -0.40 -4.65 3.13 -120.11 -0.38 -5.03 16 23 C 0.06 0.55 10.51 59.85 0.63 1.18 16 24 H 0.05 1.20 7.79 -51.93 -0.40 0.80 16 25 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.11 2.78 5.95 -51.93 -0.31 2.47 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.12 1.50 6.08 -51.93 -0.32 1.18 16 34 H 0.09 0.54 8.13 -51.93 -0.42 0.12 16 LS Contribution 300.73 15.07 4.53 4.53 Total: -1.00 -29.60 300.73 -5.42 -35.03 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -3.80 Total: 0.11 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.60 Total: -1.67 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 1.03 Total: -33.89 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.56 Total: -18.89 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.60 -5.42 -35.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187923656.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.202 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds