Wall clock time and date at job start Mon Mar 30 2020 04:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46784 * 2 1 4 4 H 1.08996 * 109.47234 * 54.99898 * 3 2 1 5 5 C 1.50705 * 109.47198 * 175.00179 * 3 2 1 6 6 H 1.07995 * 119.99881 * 119.99535 * 5 3 2 7 7 C 1.37872 * 119.99696 * 300.00286 * 5 3 2 8 8 N 1.31513 * 120.00322 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00123 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47095 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47552 * 119.99365 * 9 7 5 12 12 H 1.48494 * 109.47240 * 240.00101 * 9 7 5 13 13 O 1.45201 * 109.47515 * 294.99866 * 3 2 1 14 14 C 1.34881 * 116.99751 * 89.99656 * 13 3 2 15 15 O 1.21608 * 120.00145 * 0.02562 * 14 13 3 16 16 C 1.46618 * 119.99964 * 180.02562 * 14 13 3 17 17 C 1.36499 * 125.85995 * 179.97438 * 16 14 13 18 18 C 1.41218 * 107.03073 * 180.02562 * 17 16 14 19 19 C 1.43197 * 126.44909 * 180.02562 * 18 17 16 20 20 N 9.04706 * 59.41842 * 319.88233 * 2 1 3 21 21 C 1.38219 * 107.10140 * 359.76202 * 18 17 16 22 22 N 1.34396 * 108.40604 * 0.38798 * 21 18 17 23 23 C 1.46499 * 125.41125 * 179.86842 * 22 21 18 24 24 H 1.08997 * 109.47115 * 299.99742 * 1 2 3 25 25 H 1.09004 * 109.47102 * 59.99842 * 1 2 3 26 26 H 1.08999 * 109.46862 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47115 * 240.00258 * 2 1 3 28 28 H 1.08991 * 109.47603 * 119.99761 * 2 1 3 29 29 H 0.96996 * 120.00595 * 180.02562 * 8 7 5 30 30 H 1.08001 * 126.48792 * 0.03989 * 17 16 14 31 31 H 1.08003 * 125.79751 * 180.23459 * 21 18 17 32 32 H 1.09002 * 109.47391 * 269.69505 * 23 22 21 33 33 H 1.09001 * 109.46813 * 149.69561 * 23 22 21 34 34 H 1.09004 * 109.47041 * 29.69689 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3375 2.1732 9 14 6.0050 0.8802 1.3811 10 1 6.5988 1.5444 0.1930 11 1 6.4000 1.6159 2.6090 12 1 6.4962 -0.5188 1.4625 13 8 1.6559 2.0918 -1.2407 14 6 0.4669 2.7285 -1.2560 15 8 -0.2292 2.7407 -0.2589 16 6 0.0137 3.4059 -2.4748 17 6 -1.1623 4.0828 -2.6232 18 6 -1.1930 4.5731 -3.9472 19 6 -2.2415 5.3439 -4.5449 20 7 -3.0728 5.9562 -5.0187 21 6 -0.0179 4.1741 -4.5558 22 7 0.7017 3.4679 -3.6671 23 6 2.0121 2.8651 -3.9234 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8899 29 1 3.8293 -0.0603 2.9501 30 1 -1.9248 4.2181 -1.8705 31 1 0.2717 4.3908 -5.5734 32 1 1.8782 1.8498 -4.2968 33 1 2.5872 2.8390 -2.9979 34 1 2.5457 3.4580 -4.6663 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187923656.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:15 Heat of formation + Delta-G solvation = -33.902622 kcal Electronic energy + Delta-G solvation = -19316.416911 eV Core-core repulsion = 16214.751628 eV Total energy + Delta-G solvation = -3101.665283 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.65854 -40.86785 -37.59539 -37.48260 -35.49080 -33.96869 -33.32695 -30.97294 -29.23238 -27.87854 -25.64064 -24.38439 -23.09048 -21.90839 -20.82660 -19.78432 -18.63876 -17.87120 -17.25605 -16.91081 -16.70733 -16.17084 -16.07460 -14.94670 -14.87399 -14.66700 -14.54907 -14.37812 -14.06164 -13.84334 -13.53856 -13.29890 -13.16854 -13.05178 -12.93160 -12.79852 -12.78652 -12.49168 -12.07831 -11.74612 -11.55602 -11.35477 -10.78665 -10.50838 -9.93148 -9.44917 -8.24050 -6.40457 0.27811 0.73981 1.45325 1.45461 1.56384 1.59867 1.80264 2.00190 2.06726 2.43915 2.65901 3.06718 3.16889 3.76707 4.04642 4.10301 4.27480 4.40485 4.42962 4.55695 4.57555 4.70940 4.85934 4.89363 5.03313 5.11897 5.24179 5.33812 5.38451 5.54609 5.67905 5.71273 5.98101 6.06154 6.13173 6.64045 6.64792 6.97299 7.30729 8.82859 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031926 B = 0.004903 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.805715 B = 5709.284594 C = 6203.941847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.227 3.773 4 H 0.005 0.995 5 C -0.542 4.542 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.978 3.022 10 H -0.259 1.259 11 H -0.282 1.282 12 H -0.275 1.275 13 O -0.351 6.351 14 C 0.520 3.480 15 O -0.537 6.537 16 C -0.058 4.058 17 C -0.054 4.054 18 C -0.157 4.157 19 C 0.321 3.679 20 N -0.482 5.482 21 C 0.137 3.863 22 N -0.398 5.398 23 C 0.053 3.947 24 H 0.034 0.966 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.269 0.731 30 H 0.155 0.845 31 H 0.240 0.760 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.549 3.352 -14.112 14.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.023 0.977 5 C -0.580 4.580 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.802 3.198 10 H -0.183 1.183 11 H -0.208 1.208 12 H -0.201 1.201 13 O -0.267 6.267 14 C 0.366 3.634 15 O -0.428 6.428 16 C -0.167 4.167 17 C -0.081 4.081 18 C -0.167 4.167 19 C 0.008 3.992 20 N -0.160 5.160 21 C -0.009 4.009 22 N -0.069 5.069 23 C -0.086 4.086 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.173 0.827 31 H 0.256 0.744 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.603 3.956 -14.318 14.941 hybrid contribution 0.810 -0.432 1.236 1.539 sum -0.793 3.524 -13.083 13.572 Atomic orbital electron populations 1.21723 0.96581 1.00476 1.00068 1.21865 0.94163 0.98205 1.02452 1.20394 0.94600 0.89111 0.78520 0.97692 1.21336 0.90200 1.39583 1.06853 0.90921 1.25771 1.03911 0.94072 0.94535 1.70024 1.37320 1.38115 1.09904 0.85195 0.78089 0.78105 0.78389 1.18266 1.20765 1.20068 1.86550 1.34634 1.63114 1.42448 1.20268 0.80169 0.76032 0.86926 1.90845 1.56295 1.60160 1.35545 1.18973 0.97453 1.13468 0.86765 1.21091 0.95302 0.95683 0.96036 1.15206 0.95146 1.11763 0.94545 1.24577 0.91637 0.91148 0.91874 1.81282 1.11442 1.13040 1.10198 1.23033 0.88886 0.92167 0.96857 1.44103 1.17012 1.37415 1.08331 1.22743 0.79644 1.00692 1.05506 0.94701 0.94458 0.92211 0.93188 0.89716 0.92197 0.82689 0.74410 0.88593 0.89822 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.56 8.56 71.98 0.62 -4.95 16 2 C -0.13 -6.13 5.49 30.60 0.17 -5.96 16 3 C 0.23 11.52 2.25 29.85 0.07 11.59 16 4 H 0.01 0.31 7.16 -2.39 -0.02 0.29 16 5 C -0.54 -28.43 8.90 25.60 0.23 -28.20 16 6 H 0.07 3.64 7.81 -2.91 -0.02 3.62 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.92 -50.53 11.29 21.45 0.24 -50.29 16 9 Si 0.98 40.55 29.54 68.60 2.03 42.57 16 10 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 12 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 13 O -0.35 -14.98 7.15 -57.95 -0.41 -15.40 16 14 C 0.52 20.71 6.37 70.01 0.45 21.15 16 15 O -0.54 -24.80 14.05 19.48 0.27 -24.52 16 16 C -0.06 -1.72 6.82 39.99 0.27 -1.45 16 17 C -0.05 -1.42 10.54 22.60 0.24 -1.18 16 18 C -0.16 -3.18 5.97 -21.31 -0.13 -3.31 16 19 C 0.32 7.35 15.83 88.33 1.40 8.75 16 20 N -0.48 -13.23 18.54 19.00 0.35 -12.88 16 21 C 0.14 1.91 11.35 84.30 0.96 2.87 16 22 N -0.40 -8.05 3.13 -533.91 -1.67 -9.72 16 23 C 0.05 0.86 10.51 127.77 1.34 2.21 16 24 H 0.03 1.58 7.79 -2.39 -0.02 1.57 16 25 H 0.04 1.51 6.06 -2.39 -0.01 1.50 16 26 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.08 4.48 5.95 -2.39 -0.01 4.46 16 29 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 30 H 0.16 4.08 8.06 -2.91 -0.02 4.05 16 31 H 0.24 0.71 8.06 -2.91 -0.02 0.69 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 2.03 6.08 -2.39 -0.01 2.01 16 34 H 0.13 0.94 8.13 -2.38 -0.02 0.92 16 Total: -1.00 -68.04 300.73 7.99 -60.05 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.12 Total: 7.32 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 6.06 Total: 2.86 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -1.08 Total: -72.88 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.14 Total: -39.92 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.57 kcal Total: -68.04 7.99 -60.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187923656.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.152 kcal (2) G-P(sol) polarization free energy of solvation -68.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds