Wall clock time and date at job start Mon Mar 30 2020 04:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47116 * 2 1 4 4 H 1.08995 * 109.47281 * 304.99957 * 3 2 1 5 5 C 1.50704 * 109.46925 * 184.99849 * 3 2 1 6 6 H 1.08003 * 119.99922 * 239.99666 * 5 3 2 7 7 C 1.37876 * 119.99963 * 60.00521 * 5 3 2 8 8 N 1.31510 * 119.99788 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99921 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47112 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47264 * 119.99999 * 9 7 5 12 12 H 1.48502 * 109.47244 * 239.99938 * 9 7 5 13 13 O 1.45201 * 109.46716 * 65.00272 * 3 2 1 14 14 C 1.34881 * 116.99751 * 269.99365 * 13 3 2 15 15 O 1.21608 * 120.00145 * 0.02562 * 14 13 3 16 16 C 1.46618 * 119.99964 * 180.02562 * 14 13 3 17 17 C 1.36499 * 125.85995 * 179.97438 * 16 14 13 18 18 C 1.41218 * 107.03073 * 180.02562 * 17 16 14 19 19 C 1.43197 * 126.44909 * 180.02562 * 18 17 16 20 20 N 9.04755 * 59.43355 * 40.10027 * 2 1 3 21 21 C 1.38219 * 107.10140 * 359.76202 * 18 17 16 22 22 N 1.34396 * 108.40604 * 0.38798 * 21 18 17 23 23 C 1.46499 * 125.41125 * 179.86842 * 22 21 18 24 24 H 1.08997 * 109.46944 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47194 * 299.99970 * 1 2 3 26 26 H 1.08997 * 109.46950 * 59.99937 * 1 2 3 27 27 H 1.09003 * 109.47194 * 240.00030 * 2 1 3 28 28 H 1.09007 * 109.47105 * 120.00067 * 2 1 3 29 29 H 0.97005 * 119.99855 * 180.02562 * 8 7 5 30 30 H 1.08001 * 126.48792 * 0.03989 * 17 16 14 31 31 H 1.08003 * 125.79751 * 180.23459 * 21 18 17 32 32 H 1.09002 * 109.47391 * 269.69505 * 23 22 21 33 33 H 1.09001 * 109.46813 * 149.69561 * 23 22 21 34 34 H 1.09004 * 109.47041 * 29.69689 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8812 -1.3817 10 1 6.5986 1.5472 -0.1946 11 1 6.4970 -0.5175 -1.4630 12 1 6.3990 1.6168 -2.6101 13 8 1.6559 2.0916 1.2408 14 6 0.4670 2.7285 1.2561 15 8 -0.2294 2.7402 0.2592 16 6 0.0143 3.4067 2.4746 17 6 -1.1611 4.0847 2.6227 18 6 -1.1910 4.5765 3.9462 19 6 -2.2391 5.3478 4.5436 20 7 -3.0710 5.9589 5.0179 21 6 -0.0209 4.1680 4.5580 22 7 0.7026 3.4693 3.6667 23 6 2.0123 2.8650 3.9234 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8293 -0.0617 -2.9495 30 1 -1.9240 4.2194 1.8702 31 1 0.2648 4.3772 5.5784 32 1 2.7971 3.5798 3.6760 33 1 2.1271 1.9721 3.3089 34 1 2.0869 2.5935 4.9765 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187923685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:19 Heat of formation + Delta-G solvation = -17.748134 kcal Electronic energy + Delta-G solvation = -19315.926774 eV Core-core repulsion = 16214.962002 eV Total energy + Delta-G solvation = -3100.964772 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.62252 -39.29933 -36.43979 -35.91110 -33.67798 -32.97394 -31.47099 -29.83580 -27.36940 -27.02595 -23.99352 -22.78204 -22.16275 -20.16872 -19.55980 -18.49048 -16.76946 -16.32376 -15.99316 -15.89457 -15.14477 -14.89910 -14.51538 -13.86147 -13.56313 -13.46906 -13.19015 -12.96261 -12.85254 -12.48816 -12.31439 -11.98138 -11.86830 -11.55805 -11.39913 -11.27054 -11.05292 -10.73020 -10.35946 -9.99538 -9.81016 -9.49545 -8.94833 -8.91278 -8.56173 -8.43467 -6.27693 -4.35703 1.39638 1.72369 2.52898 2.78165 3.16630 3.23222 3.26825 3.41584 3.46295 3.67590 4.16758 4.26801 4.66740 4.85677 4.99079 5.04940 5.28188 5.43077 5.58696 5.84619 5.97892 6.17019 6.23447 6.36365 6.38538 6.69998 6.77314 6.87056 6.92077 7.07935 7.12987 7.50944 7.62050 7.63540 7.82404 8.04393 8.47987 8.75275 9.29991 10.78962 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031919 B = 0.004903 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.020329 B = 5709.363142 C = 6203.491027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.049 0.951 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.885 5.885 9 Si 0.910 3.090 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.281 1.281 13 O -0.356 6.356 14 C 0.523 3.477 15 O -0.499 6.499 16 C -0.020 4.020 17 C -0.064 4.064 18 C -0.143 4.143 19 C 0.299 3.701 20 N -0.447 5.447 21 C 0.085 3.915 22 N -0.400 5.400 23 C 0.057 3.943 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.041 0.959 29 H 0.267 0.733 30 H 0.160 0.840 31 H 0.184 0.816 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.776 2.881 11.342 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.522 5.522 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.273 6.273 14 C 0.367 3.633 15 O -0.388 6.388 16 C -0.129 4.129 17 C -0.090 4.090 18 C -0.153 4.153 19 C -0.016 4.016 20 N -0.124 5.124 21 C -0.059 4.059 22 N -0.071 5.071 23 C -0.083 4.083 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.127 0.873 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.178 0.822 31 H 0.201 0.799 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.826 3.488 11.533 12.376 hybrid contribution 1.248 -0.341 -0.446 1.369 sum -1.578 3.147 11.087 11.632 Atomic orbital electron populations 1.21873 0.98257 0.99167 1.00871 1.22033 0.92724 0.99218 1.03401 1.20749 0.95063 0.88754 0.78390 0.93283 1.21024 0.89446 1.39251 1.06383 0.91331 1.24878 0.99221 0.94704 0.95056 1.69891 1.35361 1.37538 1.09449 0.86242 0.83838 0.77910 0.78268 1.19534 1.20703 1.20729 1.86541 1.33566 1.62780 1.44450 1.19613 0.81269 0.76717 0.85728 1.90871 1.55608 1.58605 1.33705 1.19518 0.95717 1.11036 0.86664 1.20999 0.96089 0.96840 0.95107 1.15280 0.94260 1.10571 0.95221 1.24640 0.92185 0.92008 0.92763 1.81246 1.10488 1.11716 1.08909 1.22204 0.91197 0.96640 0.95895 1.43940 1.16311 1.37601 1.09239 1.22569 0.80438 1.01530 1.03734 0.94737 0.94902 0.92688 0.87256 0.94018 0.92326 0.82222 0.79885 0.89434 0.86585 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.56 37.16 0.32 -2.67 16 2 C -0.14 -3.13 5.49 -26.73 -0.15 -3.28 16 3 C 0.22 5.43 2.25 -27.88 -0.06 5.36 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -13.46 8.90 -34.44 -0.31 -13.76 16 6 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 7 C 0.06 1.65 5.29 -17.82 -0.09 1.56 16 8 N -0.88 -23.76 11.29 55.43 0.63 -23.13 16 9 Si 0.91 19.83 29.54 -169.99 -5.02 14.81 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 O -0.36 -7.40 7.15 -40.99 -0.29 -7.70 16 14 C 0.52 10.12 6.37 34.11 0.22 10.34 16 15 O -0.50 -10.92 14.05 -19.35 -0.27 -11.20 16 16 C -0.02 -0.30 6.82 -82.43 -0.56 -0.86 16 17 C -0.06 -0.87 10.54 -39.08 -0.41 -1.28 16 18 C -0.14 -1.66 5.97 -106.85 -0.64 -2.29 16 19 C 0.30 3.77 15.83 -22.47 -0.36 3.42 16 20 N -0.45 -6.51 18.54 41.84 0.78 -5.74 16 21 C 0.09 0.80 11.35 -16.44 -0.19 0.62 16 22 N -0.40 -4.65 3.13 -120.11 -0.38 -5.03 16 23 C 0.06 0.56 10.51 59.85 0.63 1.19 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 26 H 0.05 1.20 7.79 -51.93 -0.40 0.80 16 27 H 0.11 2.78 5.95 -51.93 -0.31 2.47 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.12 1.44 6.08 -51.93 -0.32 1.12 16 34 H 0.09 0.53 8.13 -51.93 -0.42 0.11 16 LS Contribution 300.73 15.07 4.53 4.53 Total: -1.00 -29.64 300.73 -5.42 -35.07 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -3.80 Total: 0.06 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.60 Total: -1.68 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 1.03 Total: -33.90 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.56 Total: -18.89 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.64 -5.42 -35.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187923685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.318 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds