Wall clock time and date at job start Mon Mar 30 2020 04:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47116 * 2 1 4 4 H 1.08995 * 109.47281 * 304.99957 * 3 2 1 5 5 C 1.50704 * 109.46925 * 184.99849 * 3 2 1 6 6 H 1.08003 * 119.99922 * 239.99666 * 5 3 2 7 7 C 1.37876 * 119.99963 * 60.00521 * 5 3 2 8 8 N 1.31510 * 119.99788 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99921 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47112 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47264 * 119.99999 * 9 7 5 12 12 H 1.48502 * 109.47244 * 239.99938 * 9 7 5 13 13 O 1.45201 * 109.46716 * 65.00272 * 3 2 1 14 14 C 1.34881 * 116.99751 * 269.99365 * 13 3 2 15 15 O 1.21608 * 120.00145 * 0.02562 * 14 13 3 16 16 C 1.46618 * 119.99964 * 180.02562 * 14 13 3 17 17 C 1.36499 * 125.85995 * 179.97438 * 16 14 13 18 18 C 1.41218 * 107.03073 * 180.02562 * 17 16 14 19 19 C 1.43197 * 126.44909 * 180.02562 * 18 17 16 20 20 N 9.04755 * 59.43355 * 40.10027 * 2 1 3 21 21 C 1.38219 * 107.10140 * 359.76202 * 18 17 16 22 22 N 1.34396 * 108.40604 * 0.38798 * 21 18 17 23 23 C 1.46499 * 125.41125 * 179.86842 * 22 21 18 24 24 H 1.08997 * 109.46944 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47194 * 299.99970 * 1 2 3 26 26 H 1.08997 * 109.46950 * 59.99937 * 1 2 3 27 27 H 1.09003 * 109.47194 * 240.00030 * 2 1 3 28 28 H 1.09007 * 109.47105 * 120.00067 * 2 1 3 29 29 H 0.97005 * 119.99855 * 180.02562 * 8 7 5 30 30 H 1.08001 * 126.48792 * 0.03989 * 17 16 14 31 31 H 1.08003 * 125.79751 * 180.23459 * 21 18 17 32 32 H 1.09002 * 109.47391 * 269.69505 * 23 22 21 33 33 H 1.09001 * 109.46813 * 149.69561 * 23 22 21 34 34 H 1.09004 * 109.47041 * 29.69689 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8812 -1.3817 10 1 6.5986 1.5472 -0.1946 11 1 6.4970 -0.5175 -1.4630 12 1 6.3990 1.6168 -2.6101 13 8 1.6559 2.0916 1.2408 14 6 0.4670 2.7285 1.2561 15 8 -0.2294 2.7402 0.2592 16 6 0.0143 3.4067 2.4746 17 6 -1.1611 4.0847 2.6227 18 6 -1.1910 4.5765 3.9462 19 6 -2.2391 5.3478 4.5436 20 7 -3.0710 5.9589 5.0179 21 6 -0.0209 4.1680 4.5580 22 7 0.7026 3.4693 3.6667 23 6 2.0123 2.8650 3.9234 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8293 -0.0617 -2.9495 30 1 -1.9240 4.2194 1.8702 31 1 0.2648 4.3772 5.5784 32 1 2.7971 3.5798 3.6760 33 1 2.1271 1.9721 3.3089 34 1 2.0869 2.5935 4.9765 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187923685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:18 Heat of formation + Delta-G solvation = -33.853330 kcal Electronic energy + Delta-G solvation = -19316.625148 eV Core-core repulsion = 16214.962002 eV Total energy + Delta-G solvation = -3101.663146 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.65914 -40.86842 -37.59607 -37.48267 -35.49070 -33.96822 -33.32751 -30.97361 -29.23187 -27.87907 -25.64020 -24.38409 -23.09120 -21.90638 -20.83059 -19.78340 -18.63001 -17.86825 -17.27424 -16.90947 -16.71148 -16.14738 -16.08803 -14.94388 -14.87376 -14.66767 -14.54500 -14.37549 -14.09007 -13.85420 -13.48973 -13.31033 -13.12685 -13.04180 -12.98103 -12.84863 -12.77240 -12.46968 -12.08090 -11.74468 -11.55349 -11.35044 -10.79243 -10.50764 -9.93259 -9.44949 -8.24087 -6.40401 0.27767 0.73968 1.45203 1.45404 1.56331 1.59825 1.80238 2.00595 2.06176 2.43924 2.65899 3.06688 3.16864 3.76617 4.04610 4.10232 4.27638 4.40254 4.42957 4.55512 4.57682 4.70998 4.85897 4.89324 5.02874 5.12159 5.24247 5.33789 5.38588 5.54531 5.67865 5.71278 5.98110 6.06166 6.13183 6.64047 6.64828 6.97239 7.30759 8.82799 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031919 B = 0.004903 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.020329 B = 5709.363142 C = 6203.491027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.227 3.773 4 H 0.005 0.995 5 C -0.542 4.542 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.978 3.022 10 H -0.259 1.259 11 H -0.275 1.275 12 H -0.282 1.282 13 O -0.351 6.351 14 C 0.519 3.481 15 O -0.537 6.537 16 C -0.058 4.058 17 C -0.054 4.054 18 C -0.157 4.157 19 C 0.321 3.679 20 N -0.482 5.482 21 C 0.137 3.863 22 N -0.398 5.398 23 C 0.054 3.946 24 H 0.059 0.941 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.269 0.731 30 H 0.155 0.845 31 H 0.240 0.760 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.636 3.197 14.170 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.023 0.977 5 C -0.580 4.580 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.802 3.198 10 H -0.183 1.183 11 H -0.200 1.200 12 H -0.208 1.208 13 O -0.268 6.268 14 C 0.366 3.634 15 O -0.428 6.428 16 C -0.167 4.167 17 C -0.081 4.081 18 C -0.167 4.167 19 C 0.008 3.992 20 N -0.160 5.160 21 C -0.009 4.009 22 N -0.069 5.069 23 C -0.085 4.085 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.173 0.827 31 H 0.256 0.744 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.689 3.805 14.375 14.965 hybrid contribution 0.837 -0.380 -1.255 1.556 sum -0.851 3.424 13.120 13.586 Atomic orbital electron populations 1.21722 0.96569 1.00487 1.00076 1.21871 0.94172 0.98187 1.02478 1.20393 0.94591 0.89119 0.78517 0.97705 1.21335 0.90213 1.39565 1.06843 0.90951 1.25771 1.03908 0.94083 0.94535 1.70028 1.37306 1.38083 1.09938 0.85196 0.78095 0.78113 0.78374 1.18289 1.20036 1.20782 1.86550 1.34750 1.63125 1.42330 1.20268 0.80180 0.76028 0.86920 1.90845 1.56319 1.60121 1.35556 1.18974 0.97308 1.13556 0.86823 1.21091 0.95282 0.95665 0.96071 1.15206 0.95287 1.11656 0.94509 1.24577 0.91618 0.91168 0.91872 1.81282 1.11425 1.13077 1.10176 1.23033 0.88795 0.92225 0.96884 1.44103 1.16871 1.37654 1.08240 1.22736 0.79477 1.00245 1.06065 0.92196 0.94442 0.94710 0.89708 0.93158 0.92200 0.82687 0.74405 0.88922 0.89701 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.56 8.56 71.98 0.62 -4.94 16 2 C -0.13 -6.13 5.49 30.59 0.17 -5.96 16 3 C 0.23 11.53 2.25 29.85 0.07 11.59 16 4 H 0.01 0.30 7.16 -2.39 -0.02 0.28 16 5 C -0.54 -28.45 8.90 25.60 0.23 -28.22 16 6 H 0.07 3.64 7.81 -2.91 -0.02 3.61 16 7 C 0.02 0.88 5.29 84.66 0.45 1.32 16 8 N -0.92 -50.53 11.29 21.45 0.24 -50.29 16 9 Si 0.98 40.58 29.54 68.60 2.03 42.61 16 10 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 11 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 13 O -0.35 -14.99 7.15 -57.95 -0.41 -15.40 16 14 C 0.52 20.70 6.37 70.01 0.45 21.15 16 15 O -0.54 -24.79 14.05 19.48 0.27 -24.52 16 16 C -0.06 -1.72 6.82 39.99 0.27 -1.45 16 17 C -0.05 -1.41 10.54 22.60 0.24 -1.18 16 18 C -0.16 -3.18 5.97 -21.31 -0.13 -3.30 16 19 C 0.32 7.35 15.83 88.33 1.40 8.75 16 20 N -0.48 -13.23 18.54 19.00 0.35 -12.87 16 21 C 0.14 1.91 11.35 84.30 0.96 2.87 16 22 N -0.40 -8.05 3.13 -533.91 -1.67 -9.72 16 23 C 0.05 0.88 10.51 127.77 1.34 2.22 16 24 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.04 1.52 6.06 -2.39 -0.01 1.50 16 26 H 0.03 1.58 7.79 -2.39 -0.02 1.56 16 27 H 0.08 4.48 5.95 -2.39 -0.01 4.46 16 28 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 30 H 0.16 4.08 8.06 -2.91 -0.02 4.05 16 31 H 0.24 0.71 8.06 -2.91 -0.02 0.68 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 33 H 0.08 2.00 6.08 -2.39 -0.01 1.98 16 34 H 0.14 0.90 8.13 -2.38 -0.02 0.88 16 Total: -1.00 -68.09 300.73 7.99 -60.10 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.12 Total: 7.25 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 6.06 Total: 2.85 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -1.08 Total: -72.88 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.14 Total: -39.92 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -68.09 7.99 -60.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187923685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.245 kcal (2) G-P(sol) polarization free energy of solvation -68.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds